Wall clock time and date at job start Sun Mar 29 2020 21:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47124 * 180.02562 * 15 14 13 17 17 C 1.34665 * 126.59437 * 85.02148 * 16 15 14 18 18 N 1.34128 * 108.02228 * 179.97438 * 17 16 15 19 19 C 1.30503 * 109.25385 * 0.02562 * 18 17 16 20 20 N 1.35041 * 108.70133 * 359.76186 * 19 18 17 21 21 C 1.46503 * 126.39968 * 180.26598 * 20 19 18 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 27 27 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 28 28 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 29 29 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 30 30 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 31 31 H 1.09001 * 109.47146 * 300.00243 * 15 14 13 32 32 H 1.08998 * 109.46587 * 60.00003 * 15 14 13 33 33 H 1.08000 * 125.98906 * 359.97259 * 17 16 15 34 34 H 1.08005 * 125.64700 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.47039 * 270.12697 * 21 20 19 36 36 H 1.09004 * 109.46888 * 30.12781 * 21 20 19 37 37 H 1.08998 * 109.47069 * 150.12439 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4208 -4.7691 16 6 3.1676 -0.3234 -5.9782 17 6 2.4320 -1.0580 -6.8342 18 7 3.2554 -1.5518 -7.7708 19 6 4.4735 -1.1515 -7.5273 20 7 4.4620 -0.3785 -6.4200 21 6 5.6191 0.2769 -5.8053 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1611 3.4845 26 1 2.9172 -1.1204 -1.0288 27 1 1.0871 0.6165 -2.5525 28 1 2.7588 1.0464 -2.1181 29 1 3.5917 -0.9260 -3.3683 30 1 1.9201 -1.3564 -3.8032 31 1 1.6669 0.8145 -4.9752 32 1 3.3384 1.2443 -4.5399 33 1 1.3660 -1.2210 -6.7766 34 1 5.3455 -1.3944 -8.1165 35 1 6.0691 -0.3928 -5.0725 36 1 6.3518 0.5178 -6.5756 37 1 5.2973 1.1933 -5.3107 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602871520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:57 Heat of formation + Delta-G solvation = 27.570303 kcal Electronic energy + Delta-G solvation = -16300.815057 eV Core-core repulsion = 13691.819478 eV Total energy + Delta-G solvation = -2608.995579 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.97604 -38.12815 -35.79486 -34.83074 -33.87362 -31.15155 -29.01869 -27.76124 -27.33742 -25.68185 -22.59035 -22.28484 -21.74006 -20.66122 -18.51078 -17.86216 -16.97005 -16.56318 -16.45193 -15.61596 -15.54617 -15.08261 -14.64402 -14.41916 -14.04957 -13.80960 -13.56971 -13.33506 -13.24758 -13.14864 -12.79776 -12.62720 -12.36986 -12.19907 -12.15436 -11.75165 -11.59857 -10.91839 -10.86271 -10.56826 -10.46100 -9.25618 -9.03973 -8.13528 -6.28004 1.11907 1.42507 1.44714 1.52261 1.97348 2.21783 2.41579 3.14863 3.54325 3.82194 3.93551 3.98613 4.03847 4.34162 4.37638 4.46214 4.54124 4.65265 4.70098 4.74910 4.81307 4.90197 4.92210 5.08640 5.19258 5.23237 5.32099 5.49103 5.53050 5.67422 5.82313 5.86727 6.22618 6.35407 6.48195 6.79031 7.00862 7.15086 7.42595 8.91975 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045335 B = 0.003954 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.473024 B = 7079.203774 C = 7324.507026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.214 3.786 3 H -0.029 1.029 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.269 1.269 12 N -0.691 5.691 13 C 0.063 3.937 14 C -0.091 4.091 15 C -0.033 4.033 16 C -0.020 4.020 17 C -0.055 4.055 18 N -0.537 5.537 19 C 0.175 3.825 20 N -0.460 5.460 21 C 0.063 3.937 22 H 0.026 0.974 23 H 0.057 0.943 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.331 0.669 27 H 0.061 0.939 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.169 0.831 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.515 0.800 -16.010 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H -0.012 1.012 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.195 1.195 12 N -0.322 5.322 13 C -0.066 4.066 14 C -0.130 4.130 15 C -0.072 4.072 16 C -0.135 4.135 17 C -0.202 4.202 18 N -0.256 5.256 19 C -0.107 4.107 20 N -0.143 5.143 21 C -0.078 4.078 22 H 0.045 0.955 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.186 0.814 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.710 0.257 -16.630 18.774 hybrid contribution 0.997 0.696 1.835 2.201 sum 9.707 0.953 -14.795 17.721 Atomic orbital electron populations 1.21550 0.97825 0.98774 0.99087 1.18923 0.92726 0.90827 0.86981 1.01159 1.21583 1.31859 1.12756 0.91717 0.92309 1.25745 0.95137 0.95666 1.02062 1.70018 1.37381 1.24039 1.24267 0.85539 0.78779 0.78612 0.78255 1.20878 1.19755 1.19450 1.60624 1.32200 1.33725 1.05628 1.21946 0.99796 0.93846 0.91054 1.21362 1.00883 0.98163 0.92544 1.19959 1.02376 0.96368 0.88543 1.21389 0.84742 1.06521 1.00877 1.22283 1.00379 1.02656 0.94864 1.70211 1.01845 1.25937 1.27587 1.25584 0.98375 0.96194 0.90532 1.45551 1.08064 1.38223 1.22463 1.22343 0.86188 0.98719 1.00540 0.95523 0.92471 0.95806 0.92794 0.85160 0.92089 0.96460 0.92619 0.91878 0.88850 0.90063 0.81365 0.74573 0.89863 0.86643 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 9.19 71.98 0.66 -5.10 16 2 C 0.21 10.98 2.60 44.17 0.11 11.10 16 3 H -0.03 -1.64 7.80 -2.39 -0.02 -1.65 16 4 C -0.54 -29.84 8.59 25.60 0.22 -29.62 16 5 H 0.06 3.16 7.62 -2.91 -0.02 3.14 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.90 11.32 21.45 0.24 -52.65 16 8 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 N -0.69 -29.23 6.30 -495.46 -3.12 -32.35 16 13 C 0.06 2.13 5.48 86.30 0.47 2.61 16 14 C -0.09 -2.42 5.46 30.59 0.17 -2.26 16 15 C -0.03 -0.71 5.55 29.85 0.17 -0.55 16 16 C -0.02 -0.45 6.21 40.95 0.25 -0.20 16 17 C -0.05 -1.45 11.79 83.52 0.98 -0.47 16 18 N -0.54 -14.72 11.25 -200.31 -2.25 -16.97 16 19 C 0.18 3.49 12.56 180.26 2.26 5.76 16 20 N -0.46 -8.65 3.15 -537.88 -1.70 -10.35 16 21 C 0.06 0.66 11.00 127.77 1.41 2.06 16 22 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 24 H 0.02 1.06 7.45 -2.38 -0.02 1.04 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.33 13.62 8.22 -89.70 -0.74 12.89 16 27 H 0.06 2.10 7.44 -2.39 -0.02 2.09 16 28 H 0.02 0.59 8.05 -2.39 -0.02 0.57 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.50 7.09 -2.39 -0.02 1.49 16 33 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.24 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 0.89 7.11 -2.39 -0.02 0.87 16 Total: -1.00 -67.67 306.76 2.66 -65.01 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.31 Total: 17.54 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 7.16 Total: -15.50 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -6.83 Total: -112.33 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.67 2.66 -65.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.579 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds