Wall clock time and date at job start Sun Mar 29 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99829 * 2 1 4 4 N 1.46901 * 109.47117 * 128.36577 * 3 2 1 5 5 C 1.46902 * 110.99814 * 165.08320 * 4 3 2 6 6 C 1.53000 * 109.46890 * 284.79148 * 5 4 3 7 7 C 1.50700 * 115.54849 * 66.37925 * 6 5 4 8 8 H 1.07999 * 120.00184 * 216.10676 * 7 6 5 9 9 C 1.37885 * 120.00023 * 35.82949 * 7 6 5 10 10 N 1.31508 * 119.99822 * 9.83335 * 9 7 6 11 11 Si 1.86800 * 120.00205 * 189.83185 * 9 7 6 12 12 H 1.48507 * 109.46763 * 64.99381 * 11 9 7 13 13 H 1.48494 * 109.47200 * 184.99840 * 11 9 7 14 14 H 1.48500 * 109.47042 * 305.00139 * 11 9 7 15 15 C 1.53002 * 117.50284 * 212.04964 * 6 5 4 16 16 C 1.53000 * 117.50215 * 280.70857 * 6 5 4 17 17 C 1.46902 * 110.99704 * 289.03010 * 4 3 2 18 18 C 1.53004 * 109.47499 * 310.80237 * 17 4 3 19 19 C 1.52997 * 109.47046 * 70.80192 * 17 4 3 20 20 C 1.53002 * 109.47337 * 190.79980 * 17 4 3 21 21 H 1.08008 * 119.99689 * 180.02562 * 1 2 3 22 22 H 1.07998 * 120.00229 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00229 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46917 * 8.36265 * 3 2 1 25 25 H 1.09005 * 109.46993 * 248.36506 * 3 2 1 26 26 H 1.09003 * 109.46823 * 164.79794 * 5 4 3 27 27 H 1.08997 * 109.47595 * 44.79528 * 5 4 3 28 28 H 0.96998 * 120.00594 * 174.96679 * 10 9 7 29 29 H 1.09000 * 117.49818 * 215.00692 * 15 6 5 30 30 H 1.09001 * 117.49146 * 0.02562 * 15 6 5 31 31 H 1.08997 * 117.49802 * 359.97438 * 16 6 5 32 32 H 1.09002 * 117.49927 * 144.97252 * 16 6 5 33 33 H 1.09001 * 109.46733 * 59.99733 * 18 17 4 34 34 H 1.08995 * 109.47253 * 179.97438 * 18 17 4 35 35 H 1.08997 * 109.46595 * 299.99985 * 18 17 4 36 36 H 1.09001 * 109.47146 * 49.94870 * 19 17 4 37 37 H 1.09001 * 109.47586 * 169.94376 * 19 17 4 38 38 H 1.08997 * 109.47546 * 289.95084 * 19 17 4 39 39 H 1.08997 * 109.46716 * 68.82963 * 20 17 4 40 40 H 1.08995 * 109.47169 * 188.83510 * 20 17 4 41 41 H 1.09000 * 109.47061 * 308.83802 * 20 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0528 1.2994 1.0859 5 6 4.0342 2.3781 0.9096 6 6 5.0140 1.9993 -0.2029 7 6 4.4227 1.9067 -1.5859 8 1 4.7773 1.1551 -2.2756 9 6 3.4249 2.7779 -1.9689 10 7 3.1228 3.8070 -1.2080 11 14 2.5024 2.4964 -3.5687 12 1 1.7296 1.2315 -3.4784 13 1 1.5723 3.6287 -3.8096 14 1 3.4720 2.4051 -4.6897 15 6 6.4516 2.5086 -0.0819 16 6 6.1419 1.0276 0.1497 17 6 2.3962 1.3942 2.3966 18 6 1.3865 2.5436 2.3794 19 6 1.6701 0.0820 2.6994 20 6 3.4482 1.6557 3.4764 21 1 -0.5400 -0.9354 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3646 2.1281 0.1495 25 1 2.5733 1.4303 -0.9553 26 1 4.5815 2.5271 1.8404 27 1 3.5174 3.2993 0.6405 28 1 2.4728 4.4601 -1.5110 29 1 6.9697 2.7767 -1.0027 30 1 6.6995 3.1132 0.7905 31 1 6.1863 0.6585 1.1743 32 1 6.4560 0.3210 -0.6186 33 1 0.6370 2.3572 1.6102 34 1 0.8990 2.6136 3.3518 35 1 1.9038 3.4784 2.1637 36 1 2.3493 -0.7549 2.5371 37 1 1.3358 0.0826 3.7369 38 1 0.8079 -0.0167 2.0399 39 1 3.8555 2.6590 3.3513 40 1 2.9877 1.5705 4.4606 41 1 4.2511 0.9240 3.3862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602893497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:36 Heat of formation + Delta-G solvation = 70.129690 kcal Electronic energy + Delta-G solvation = -18811.010231 eV Core-core repulsion = 16307.400509 eV Total energy + Delta-G solvation = -2503.609723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.87548 -36.06777 -33.54182 -32.38699 -30.79923 -27.34931 -26.70590 -25.76443 -25.09215 -22.82144 -21.01860 -19.25169 -18.94307 -17.79855 -16.10289 -15.46483 -14.78712 -14.24661 -14.04453 -13.80041 -13.40568 -13.10455 -12.79491 -12.50621 -11.81044 -11.78648 -11.54266 -11.38436 -11.24575 -11.05462 -10.90960 -10.78172 -10.51147 -10.45233 -10.30851 -10.14532 -9.89163 -9.69354 -9.24459 -8.98284 -8.64448 -8.25791 -7.83423 -7.05919 -5.99404 -4.09243 2.97050 3.23263 3.29091 3.33027 4.27434 4.80185 5.10162 5.46257 5.55268 5.64995 5.69454 5.86601 5.91991 6.07355 6.11044 6.21257 6.27692 6.33690 6.37589 6.46739 6.48940 6.56974 6.61032 6.72304 6.76773 6.83459 6.85862 6.92348 7.04992 7.06905 7.17392 7.34890 7.43128 7.44609 7.57993 7.62180 8.01528 8.39454 8.44175 8.52476 8.85081 9.40162 10.87533 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.013142 C = 0.009532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.695177 B = 2130.134875 C = 2936.811496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.097 4.097 3 C 0.040 3.960 4 N -0.505 5.505 5 C 0.070 3.930 6 C 0.063 3.937 7 C -0.474 4.474 8 H 0.060 0.940 9 C 0.071 3.929 10 N -0.877 5.877 11 Si 0.876 3.124 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.274 1.274 15 C -0.207 4.207 16 C -0.199 4.199 17 C 0.101 3.899 18 C -0.175 4.175 19 C -0.148 4.148 20 C -0.139 4.139 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.035 0.965 25 H 0.151 0.849 26 H 0.038 0.962 27 H 0.101 0.899 28 H 0.263 0.737 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -3.349 5.641 7.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.115 4.115 3 C -0.086 4.086 4 N -0.228 5.228 5 C -0.056 4.056 6 C 0.062 3.938 7 C -0.511 4.511 8 H 0.078 0.922 9 C -0.130 4.130 10 N -0.515 5.515 11 Si 0.702 3.298 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.246 4.246 16 C -0.237 4.237 17 C 0.011 3.989 18 C -0.234 4.234 19 C -0.206 4.206 20 C -0.196 4.196 21 H 0.104 0.896 22 H 0.104 0.896 23 H 0.121 0.879 24 H 0.053 0.947 25 H 0.167 0.833 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.071 -3.651 5.666 7.408 hybrid contribution -0.864 0.623 -0.750 1.303 sum -3.935 -3.029 4.917 6.988 Atomic orbital electron populations 1.23521 0.96112 1.00510 1.08418 1.23294 0.95223 1.00224 0.92798 1.22354 0.94254 0.91454 1.00570 1.62088 1.14317 1.47329 0.99109 1.22090 0.93397 0.95343 0.94790 1.18885 0.85106 0.95340 0.94491 1.20583 1.17363 1.16124 0.97072 0.92179 1.24867 0.96667 0.94969 0.96532 1.69742 1.34228 1.11371 1.36154 0.86919 0.80275 0.78477 0.84079 1.19388 1.20955 1.19939 1.22955 1.05786 0.95712 1.00149 1.22737 1.09649 0.91934 0.99333 1.21003 0.92799 0.93766 0.91374 1.22459 1.00389 0.99888 1.00629 1.22208 1.01098 0.97328 0.99946 1.21969 0.99001 1.01708 0.96948 0.89641 0.89565 0.87911 0.94741 0.83284 0.94346 0.88200 0.92649 0.90751 0.92046 0.91496 0.91239 0.92230 0.93820 0.92452 0.92475 0.94112 0.91056 0.92569 0.93549 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.20 12.73 29.01 0.37 -3.83 16 2 C -0.10 -1.84 6.95 -36.02 -0.25 -2.09 16 3 C 0.04 0.86 3.90 -4.97 -0.02 0.84 16 4 N -0.51 -10.56 4.31 -220.39 -0.95 -11.51 16 5 C 0.07 1.60 3.91 -3.82 -0.01 1.59 16 6 C 0.06 1.51 1.99 -155.66 -0.31 1.20 16 7 C -0.47 -12.27 7.45 -34.44 -0.26 -12.52 16 8 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 9 C 0.07 1.81 3.08 -17.82 -0.05 1.75 16 10 N -0.88 -22.67 10.04 55.43 0.56 -22.11 16 11 Si 0.88 20.03 28.92 -169.99 -4.92 15.11 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 C -0.21 -4.71 9.92 -26.69 -0.26 -4.97 16 16 C -0.20 -4.40 9.96 -26.70 -0.27 -4.66 16 17 C 0.10 1.81 0.72 -131.60 -0.09 1.71 16 18 C -0.17 -3.09 7.65 37.16 0.28 -2.81 16 19 C -0.15 -2.41 7.52 37.16 0.28 -2.13 16 20 C -0.14 -2.29 7.43 37.16 0.28 -2.01 16 21 H 0.09 1.26 8.06 -52.48 -0.42 0.84 16 22 H 0.09 1.47 7.85 -52.49 -0.41 1.05 16 23 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 24 H 0.03 0.78 5.19 -51.93 -0.27 0.51 16 25 H 0.15 3.65 2.20 -51.93 -0.11 3.53 16 26 H 0.04 0.83 5.19 -51.93 -0.27 0.56 16 27 H 0.10 2.52 4.74 -51.93 -0.25 2.28 16 28 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 29 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.06 1.10 6.08 -51.93 -0.32 0.78 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.10 7.35 -51.93 -0.38 0.71 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.04 0.58 8.04 -51.93 -0.42 0.16 16 38 H 0.07 1.17 4.40 -51.93 -0.23 0.94 16 39 H 0.06 0.95 6.51 -51.93 -0.34 0.62 16 40 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -24.96 302.65 -7.83 -32.79 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.76 Total: 9.10 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: -0.32 Total: -27.94 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: -0.39 Total: -33.62 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.92 Total: 15.11 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -24.96 -7.83 -32.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602893497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.920 kcal (2) G-P(sol) polarization free energy of solvation -24.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds