Wall clock time and date at job start Sun Mar 29 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99829 * 2 1 4 4 N 1.46901 * 109.47117 * 128.36577 * 3 2 1 5 5 C 1.46902 * 110.99814 * 165.08320 * 4 3 2 6 6 C 1.53000 * 109.46890 * 284.79148 * 5 4 3 7 7 C 1.50700 * 115.54849 * 66.37925 * 6 5 4 8 8 H 1.07999 * 120.00184 * 216.10676 * 7 6 5 9 9 C 1.37885 * 120.00023 * 35.82949 * 7 6 5 10 10 N 1.31508 * 119.99822 * 9.83335 * 9 7 6 11 11 Si 1.86800 * 120.00205 * 189.83185 * 9 7 6 12 12 H 1.48507 * 109.46763 * 64.99381 * 11 9 7 13 13 H 1.48494 * 109.47200 * 184.99840 * 11 9 7 14 14 H 1.48500 * 109.47042 * 305.00139 * 11 9 7 15 15 C 1.53002 * 117.50284 * 212.04964 * 6 5 4 16 16 C 1.53000 * 117.50215 * 280.70857 * 6 5 4 17 17 C 1.46902 * 110.99704 * 289.03010 * 4 3 2 18 18 C 1.53004 * 109.47499 * 310.80237 * 17 4 3 19 19 C 1.52997 * 109.47046 * 70.80192 * 17 4 3 20 20 C 1.53002 * 109.47337 * 190.79980 * 17 4 3 21 21 H 1.08008 * 119.99689 * 180.02562 * 1 2 3 22 22 H 1.07998 * 120.00229 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00229 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46917 * 8.36265 * 3 2 1 25 25 H 1.09005 * 109.46993 * 248.36506 * 3 2 1 26 26 H 1.09003 * 109.46823 * 164.79794 * 5 4 3 27 27 H 1.08997 * 109.47595 * 44.79528 * 5 4 3 28 28 H 0.96998 * 120.00594 * 174.96679 * 10 9 7 29 29 H 1.09000 * 117.49818 * 215.00692 * 15 6 5 30 30 H 1.09001 * 117.49146 * 0.02562 * 15 6 5 31 31 H 1.08997 * 117.49802 * 359.97438 * 16 6 5 32 32 H 1.09002 * 117.49927 * 144.97252 * 16 6 5 33 33 H 1.09001 * 109.46733 * 59.99733 * 18 17 4 34 34 H 1.08995 * 109.47253 * 179.97438 * 18 17 4 35 35 H 1.08997 * 109.46595 * 299.99985 * 18 17 4 36 36 H 1.09001 * 109.47146 * 49.94870 * 19 17 4 37 37 H 1.09001 * 109.47586 * 169.94376 * 19 17 4 38 38 H 1.08997 * 109.47546 * 289.95084 * 19 17 4 39 39 H 1.08997 * 109.46716 * 68.82963 * 20 17 4 40 40 H 1.08995 * 109.47169 * 188.83510 * 20 17 4 41 41 H 1.09000 * 109.47061 * 308.83802 * 20 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0528 1.2994 1.0859 5 6 4.0342 2.3781 0.9096 6 6 5.0140 1.9993 -0.2029 7 6 4.4227 1.9067 -1.5859 8 1 4.7773 1.1551 -2.2756 9 6 3.4249 2.7779 -1.9689 10 7 3.1228 3.8070 -1.2080 11 14 2.5024 2.4964 -3.5687 12 1 1.7296 1.2315 -3.4784 13 1 1.5723 3.6287 -3.8096 14 1 3.4720 2.4051 -4.6897 15 6 6.4516 2.5086 -0.0819 16 6 6.1419 1.0276 0.1497 17 6 2.3962 1.3942 2.3966 18 6 1.3865 2.5436 2.3794 19 6 1.6701 0.0820 2.6994 20 6 3.4482 1.6557 3.4764 21 1 -0.5400 -0.9354 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3646 2.1281 0.1495 25 1 2.5733 1.4303 -0.9553 26 1 4.5815 2.5271 1.8404 27 1 3.5174 3.2993 0.6405 28 1 2.4728 4.4601 -1.5110 29 1 6.9697 2.7767 -1.0027 30 1 6.6995 3.1132 0.7905 31 1 6.1863 0.6585 1.1743 32 1 6.4560 0.3210 -0.6186 33 1 0.6370 2.3572 1.6102 34 1 0.8990 2.6136 3.3518 35 1 1.9038 3.4784 2.1637 36 1 2.3493 -0.7549 2.5371 37 1 1.3358 0.0826 3.7369 38 1 0.8079 -0.0167 2.0399 39 1 3.8555 2.6590 3.3513 40 1 2.9877 1.5705 4.4606 41 1 4.2511 0.9240 3.3862 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602893497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:36 Heat of formation + Delta-G solvation = 57.801939 kcal Electronic energy + Delta-G solvation = -18811.544803 eV Core-core repulsion = 16307.400509 eV Total energy + Delta-G solvation = -2504.144294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45008 -37.80651 -35.08153 -34.20185 -32.37735 -28.78673 -28.07343 -27.70816 -26.64772 -24.43751 -22.82120 -20.91535 -20.57360 -19.30345 -17.98496 -17.00308 -16.65586 -15.82871 -15.72445 -15.23289 -14.99598 -14.65933 -14.42600 -14.11887 -13.47328 -13.27847 -13.16956 -12.82471 -12.75976 -12.69474 -12.45556 -12.41857 -12.19646 -12.08585 -11.96641 -11.73452 -11.47622 -11.26258 -11.04494 -10.81390 -10.45587 -9.91652 -9.52222 -8.74410 -7.90566 -6.07674 1.38646 1.42860 1.47219 1.54587 2.38123 2.97809 3.43732 3.84546 4.08593 4.18193 4.26150 4.42291 4.44619 4.54398 4.68210 4.76249 4.77977 4.88118 4.92473 4.98570 5.01855 5.04938 5.06600 5.12490 5.19075 5.26555 5.27962 5.31334 5.45833 5.51510 5.58661 5.64648 5.68546 5.71396 5.94395 5.99068 6.16574 6.53257 6.72907 6.79461 6.97499 7.43476 8.91403 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.013142 C = 0.009532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.695177 B = 2130.134875 C = 2936.811496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.119 4.119 3 C 0.046 3.954 4 N -0.508 5.508 5 C 0.082 3.918 6 C 0.037 3.963 7 C -0.492 4.492 8 H 0.045 0.955 9 C 0.050 3.950 10 N -0.890 5.890 11 Si 0.918 3.082 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.275 1.275 15 C -0.208 4.208 16 C -0.183 4.183 17 C 0.093 3.907 18 C -0.166 4.166 19 C -0.141 4.141 20 C -0.134 4.134 21 H 0.114 0.886 22 H 0.084 0.916 23 H 0.106 0.894 24 H 0.018 0.982 25 H 0.123 0.877 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.260 0.740 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -4.424 6.750 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.138 4.138 3 C -0.081 4.081 4 N -0.232 5.232 5 C -0.045 4.045 6 C 0.036 3.964 7 C -0.529 4.529 8 H 0.064 0.936 9 C -0.150 4.150 10 N -0.528 5.528 11 Si 0.744 3.256 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.200 1.200 15 C -0.246 4.246 16 C -0.220 4.220 17 C 0.003 3.997 18 C -0.225 4.225 19 C -0.198 4.198 20 C -0.192 4.192 21 H 0.132 0.868 22 H 0.102 0.898 23 H 0.124 0.876 24 H 0.036 0.964 25 H 0.140 0.860 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.049 -4.733 6.779 9.206 hybrid contribution -0.590 0.957 -1.075 1.556 sum -4.639 -3.775 5.704 8.265 Atomic orbital electron populations 1.23713 0.95346 1.01751 1.05025 1.23114 0.95881 0.98954 0.95852 1.22110 0.93899 0.92484 0.99601 1.62108 1.14405 1.46250 1.00392 1.21836 0.93460 0.94812 0.94414 1.19049 0.85948 0.97052 0.94360 1.20663 1.18341 1.16078 0.97866 0.93642 1.25226 0.96793 0.94622 0.98407 1.69876 1.34325 1.11689 1.36941 0.86261 0.79368 0.78376 0.81630 1.19069 1.20798 1.20023 1.22950 1.04901 0.96509 1.00289 1.22696 1.07880 0.91453 0.99966 1.21203 0.93322 0.94907 0.90238 1.22361 0.99900 0.98654 1.01578 1.22130 1.00558 0.95806 1.01332 1.21922 0.98587 1.00836 0.97810 0.86757 0.89762 0.87636 0.96370 0.86029 0.93671 0.90886 0.92961 0.91563 0.90860 0.90107 0.91361 0.93344 0.91279 0.94733 0.92952 0.91729 0.91318 0.93664 0.90791 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.93 12.73 67.78 0.86 -6.06 16 2 C -0.12 -4.38 6.95 25.65 0.18 -4.20 16 3 C 0.05 1.97 3.90 85.56 0.33 2.30 16 4 N -0.51 -21.00 4.31 -851.19 -3.67 -24.67 16 5 C 0.08 3.75 3.91 86.30 0.34 4.09 16 6 C 0.04 1.78 1.99 -52.93 -0.11 1.67 16 7 C -0.49 -25.88 7.45 25.60 0.19 -25.69 16 8 H 0.05 2.45 7.83 -2.91 -0.02 2.43 16 9 C 0.05 2.57 3.08 84.66 0.26 2.83 16 10 N -0.89 -46.87 10.04 21.45 0.22 -46.66 16 11 Si 0.92 41.36 28.92 68.60 1.98 43.34 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 C -0.21 -9.40 9.92 30.62 0.30 -9.09 16 16 C -0.18 -7.94 9.96 30.62 0.30 -7.64 16 17 C 0.09 3.18 0.72 3.53 0.00 3.19 16 18 C -0.17 -5.68 7.65 71.98 0.55 -5.13 16 19 C -0.14 -4.19 7.52 71.98 0.54 -3.65 16 20 C -0.13 -4.14 7.43 71.98 0.53 -3.60 16 21 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 22 H 0.08 2.69 7.85 -2.91 -0.02 2.67 16 23 H 0.11 3.79 8.06 -2.91 -0.02 3.76 16 24 H 0.02 0.83 5.19 -2.39 -0.01 0.82 16 25 H 0.12 6.00 2.20 -2.38 -0.01 6.00 16 26 H 0.05 1.95 5.19 -2.39 -0.01 1.94 16 27 H 0.07 3.77 4.74 -2.39 -0.01 3.76 16 28 H 0.26 13.35 8.32 -92.71 -0.77 12.58 16 29 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.05 1.74 6.08 -2.39 -0.01 1.73 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.03 1.31 7.35 -2.39 -0.02 1.29 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 38 H 0.07 2.07 4.40 -2.39 -0.01 2.06 16 39 H 0.04 1.47 6.51 -2.39 -0.02 1.46 16 40 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -52.95 302.65 3.81 -49.14 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.98 Total: 29.84 kcal Atomic # 6 Polarization: -55.29 SS G_CDS: 4.30 Total: -51.00 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -3.45 Total: -71.33 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.98 Total: 43.34 kcal Total: -52.95 3.81 -49.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602893497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.941 kcal (2) G-P(sol) polarization free energy of solvation -52.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds