Wall clock time and date at job start Sun Mar 29 2020 22:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00250 * 2 1 4 4 C 1.52993 * 109.47372 * 72.05061 * 3 2 1 5 5 H 1.08998 * 115.55076 * 335.55548 * 4 3 2 6 6 C 1.53004 * 117.49769 * 121.23082 * 4 3 2 7 7 C 1.53007 * 117.49793 * 189.88486 * 4 3 2 8 8 C 1.53001 * 117.49548 * 0.02562 * 7 4 3 9 9 C 1.52997 * 117.49840 * 145.02130 * 7 4 3 10 10 C 1.46890 * 111.00112 * 236.03648 * 2 1 3 11 11 C 1.53003 * 109.47530 * 287.81345 * 10 2 1 12 12 C 1.50696 * 115.54942 * 280.43843 * 11 10 2 13 13 H 1.08003 * 119.99630 * 144.54221 * 12 11 10 14 14 C 1.37874 * 120.00462 * 324.53555 * 12 11 10 15 15 N 1.31508 * 120.00373 * 172.06880 * 14 12 11 16 16 Si 1.86802 * 119.99637 * 352.07366 * 14 12 11 17 17 H 1.48500 * 109.47317 * 96.24120 * 16 14 12 18 18 H 1.48500 * 109.47067 * 216.23785 * 16 14 12 19 19 H 1.48501 * 109.47336 * 336.24092 * 16 14 12 20 20 C 1.53001 * 117.49667 * 134.72392 * 11 10 2 21 21 C 1.52994 * 60.00051 * 252.51741 * 20 11 10 22 22 H 1.09000 * 109.47491 * 189.85391 * 1 2 3 23 23 H 1.08997 * 109.47274 * 309.86129 * 1 2 3 24 24 H 1.09005 * 109.46707 * 69.85170 * 1 2 3 25 25 H 1.08998 * 109.47084 * 192.05782 * 3 2 1 26 26 H 1.09004 * 109.46391 * 312.04896 * 3 2 1 27 27 H 1.09002 * 117.49648 * 214.98091 * 6 4 3 28 28 H 1.09000 * 117.49628 * 359.96499 * 6 4 3 29 29 H 1.08999 * 109.47646 * 60.00184 * 8 7 4 30 30 H 1.09009 * 109.46974 * 180.02562 * 8 7 4 31 31 H 1.09001 * 109.46927 * 299.99474 * 8 7 4 32 32 H 1.08996 * 109.47364 * 59.99864 * 9 7 4 33 33 H 1.08996 * 109.46951 * 180.02562 * 9 7 4 34 34 H 1.09003 * 109.47331 * 299.99767 * 9 7 4 35 35 H 1.09002 * 109.47556 * 47.81757 * 10 2 1 36 36 H 1.09003 * 109.47325 * 167.81598 * 10 2 1 37 37 H 0.96999 * 120.00039 * 180.02562 * 15 14 12 38 38 H 1.08998 * 117.50110 * 0.02562 * 20 11 10 39 39 H 1.09003 * 117.49315 * 145.02513 * 20 11 10 40 40 H 1.09003 * 117.49831 * 252.50901 * 21 20 11 41 41 H 1.08999 * 117.49908 * 107.49506 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7633 2.0069 1.3722 5 1 0.9422 1.5859 1.9524 6 6 2.9920 2.4981 2.1403 7 6 2.0292 3.5074 1.5100 8 6 2.5063 4.2575 0.2647 9 6 1.1225 4.3019 2.4520 10 6 1.9954 -0.7661 -1.1374 11 6 1.7662 -2.2596 -0.8963 12 6 2.7507 -2.9271 0.0291 13 1 2.4205 -3.7120 0.6934 14 6 4.0728 -2.5360 0.0275 15 7 4.8981 -3.0042 0.9380 16 14 4.6916 -1.3408 -1.2679 17 1 4.6801 0.0376 -0.7156 18 1 6.0773 -1.7065 -1.6570 19 1 3.8095 -1.4034 -2.4609 20 6 1.2170 -3.0869 -2.0602 21 6 0.3195 -2.7563 -0.8662 22 1 -0.3634 -1.0125 0.1759 23 1 -0.3634 0.6586 0.7888 24 1 -0.3633 0.3540 -0.9648 25 1 3.0639 1.3504 -0.2147 26 1 1.4830 1.9572 -0.7632 27 1 2.9791 2.4005 3.2258 28 1 3.9658 2.3679 1.6682 29 1 1.7574 4.1688 -0.5222 30 1 2.6546 5.3095 0.5088 31 1 3.4475 3.8286 -0.0793 32 1 1.2068 3.9006 3.4618 33 1 1.4252 5.3490 2.4503 34 1 0.0891 4.2224 2.1145 35 1 1.4814 -0.4622 -2.0493 36 1 3.0634 -0.5746 -1.2413 37 1 5.8281 -2.7287 0.9371 38 1 1.0193 -2.5674 -2.9978 39 1 1.5678 -4.1144 -2.1569 40 1 0.0797 -3.5663 -0.1773 41 1 -0.4691 -2.0193 -1.0181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602901775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:56 Heat of formation + Delta-G solvation = 73.474025 kcal Electronic energy + Delta-G solvation = -17841.417505 eV Core-core repulsion = 15337.952804 eV Total energy + Delta-G solvation = -2503.464701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.95220 -37.65201 -34.76019 -32.09959 -29.55214 -27.93679 -27.73692 -26.47431 -25.18670 -22.30097 -21.37526 -20.40468 -19.12408 -18.39663 -16.21500 -15.98441 -15.32655 -14.59668 -14.34121 -13.99648 -13.77250 -13.42332 -13.13013 -12.95383 -12.45945 -12.31836 -12.09014 -11.90926 -11.74048 -11.63902 -11.47479 -11.19152 -10.94080 -10.77336 -10.42625 -10.05898 -9.59095 -9.55024 -9.43125 -9.21850 -9.08456 -8.57499 -8.28238 -7.56054 -6.04149 -3.95475 3.23653 3.35622 3.40672 3.85228 4.37335 4.42759 4.84758 4.89417 5.03923 5.06900 5.19009 5.45455 5.59575 5.60788 5.73719 5.74307 5.76538 5.80460 5.85875 5.92440 5.95244 5.98534 6.05767 6.10170 6.11452 6.13790 6.17746 6.30356 6.39174 6.41842 6.56071 6.60345 6.64617 6.78146 7.06454 7.19891 7.68750 7.77675 7.87389 8.60409 8.99898 9.60993 11.09104 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.008450 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.782446 B = 3312.640879 C = 3857.991088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.516 5.516 3 C 0.081 3.919 4 C -0.124 4.124 5 H 0.108 0.892 6 C -0.165 4.165 7 C -0.141 4.141 8 C -0.113 4.113 9 C -0.110 4.110 10 C 0.090 3.910 11 C 0.022 3.978 12 C -0.463 4.463 13 H 0.076 0.924 14 C 0.078 3.922 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.304 1.304 19 H -0.269 1.269 20 C -0.213 4.213 21 C -0.196 4.196 22 H 0.089 0.911 23 H 0.058 0.942 24 H 0.012 0.988 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.060 0.940 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 13.042 -1.353 14.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.239 5.239 3 C -0.047 4.047 4 C -0.143 4.143 5 H 0.126 0.874 6 C -0.202 4.202 7 C -0.142 4.142 8 C -0.170 4.170 9 C -0.167 4.167 10 C -0.037 4.037 11 C 0.021 3.979 12 C -0.500 4.500 13 H 0.094 0.906 14 C -0.124 4.124 15 N -0.532 5.532 16 Si 0.731 3.269 17 H -0.210 1.210 18 H -0.233 1.233 19 H -0.195 1.195 20 C -0.252 4.252 21 C -0.233 4.233 22 H 0.107 0.893 23 H 0.076 0.924 24 H 0.030 0.970 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.450 12.803 -0.839 14.361 hybrid contribution 0.157 0.981 -1.388 1.707 sum -6.293 13.784 -2.227 15.316 Atomic orbital electron populations 1.22790 0.88335 1.03458 0.98673 1.61707 1.06946 1.11176 1.44057 1.21719 0.99984 0.88877 0.94112 1.22378 1.00301 0.93484 0.98128 0.87359 1.23264 0.94832 1.02530 0.99530 1.21664 1.02545 0.91099 0.98847 1.21310 1.00737 0.99245 0.95755 1.21304 0.98425 0.99020 0.97975 1.22176 0.97941 0.94409 0.89129 1.19246 0.93041 0.89307 0.96331 1.20253 0.91200 1.19263 1.19277 0.90638 1.24925 0.96821 0.95677 0.94959 1.69892 1.05093 1.45061 1.33201 0.86783 0.76200 0.80941 0.82996 1.21048 1.23299 1.19506 1.23203 1.07714 1.01963 0.92277 1.22989 0.94909 1.03371 1.02004 0.89285 0.92356 0.96971 0.91110 0.95296 0.88976 0.89022 0.92515 0.92502 0.92514 0.92515 0.92527 0.92559 0.96494 0.92263 0.92696 0.91755 0.89670 0.90005 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.41 60.06 0.51 0.77 16 2 N -0.52 -10.56 4.67 -242.93 -1.13 -11.70 16 3 C 0.08 1.46 4.43 -3.83 -0.02 1.44 16 4 C -0.12 -1.96 5.32 -90.62 -0.48 -2.44 16 5 H 0.11 1.72 6.89 -51.93 -0.36 1.37 16 6 C -0.16 -2.47 9.47 -26.69 -0.25 -2.73 16 7 C -0.14 -1.84 2.70 -154.47 -0.42 -2.25 16 8 C -0.11 -1.35 8.82 37.16 0.33 -1.02 16 9 C -0.11 -1.19 9.85 37.16 0.37 -0.82 16 10 C 0.09 2.01 3.74 -3.83 -0.01 2.00 16 11 C 0.02 0.53 1.49 -155.66 -0.23 0.30 16 12 C -0.46 -13.24 9.60 -34.44 -0.33 -13.57 16 13 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 14 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 15 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 16 Si 0.90 22.60 24.35 -169.99 -4.14 18.46 16 17 H -0.28 -6.86 6.09 56.52 0.34 -6.52 16 18 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 19 H -0.27 -6.48 6.24 56.52 0.35 -6.13 16 20 C -0.21 -4.60 9.88 -26.73 -0.26 -4.86 16 21 C -0.20 -4.06 8.30 -26.73 -0.22 -4.28 16 22 H 0.09 1.58 4.70 -51.93 -0.24 1.33 16 23 H 0.06 0.88 6.59 -51.93 -0.34 0.54 16 24 H 0.01 0.19 7.99 -51.93 -0.42 -0.22 16 25 H 0.07 1.40 6.49 -51.93 -0.34 1.06 16 26 H 0.03 0.48 7.43 -51.93 -0.39 0.09 16 27 H 0.09 1.29 8.05 -51.93 -0.42 0.88 16 28 H 0.09 1.46 7.94 -51.93 -0.41 1.04 16 29 H 0.06 0.66 7.70 -51.93 -0.40 0.26 16 30 H 0.06 0.58 7.92 -51.92 -0.41 0.17 16 31 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 32 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 33 H 0.06 0.54 7.92 -51.93 -0.41 0.12 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.36 7.76 -51.93 -0.40 -0.05 16 36 H 0.06 1.42 1.15 -51.93 -0.06 1.36 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 39 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 40 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.08 1.43 5.70 -51.93 -0.30 1.14 16 LS Contribution 308.80 15.07 4.65 4.65 Total: -1.00 -30.09 308.80 -8.04 -38.13 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.07 Total: 2.56 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -1.13 Total: -25.30 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.36 Total: -38.51 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.09 -8.04 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602901775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.603 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds