Wall clock time and date at job start Sun Mar 29 2020 22:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00250 * 2 1 4 4 C 1.52993 * 109.47372 * 72.05061 * 3 2 1 5 5 H 1.08998 * 115.55076 * 335.55548 * 4 3 2 6 6 C 1.53004 * 117.49769 * 121.23082 * 4 3 2 7 7 C 1.53007 * 117.49793 * 189.88486 * 4 3 2 8 8 C 1.53001 * 117.49548 * 0.02562 * 7 4 3 9 9 C 1.52997 * 117.49840 * 145.02130 * 7 4 3 10 10 C 1.46890 * 111.00112 * 236.03648 * 2 1 3 11 11 C 1.53003 * 109.47530 * 287.81345 * 10 2 1 12 12 C 1.50696 * 115.54942 * 280.43843 * 11 10 2 13 13 H 1.08003 * 119.99630 * 144.54221 * 12 11 10 14 14 C 1.37874 * 120.00462 * 324.53555 * 12 11 10 15 15 N 1.31508 * 120.00373 * 172.06880 * 14 12 11 16 16 Si 1.86802 * 119.99637 * 352.07366 * 14 12 11 17 17 H 1.48500 * 109.47317 * 96.24120 * 16 14 12 18 18 H 1.48500 * 109.47067 * 216.23785 * 16 14 12 19 19 H 1.48501 * 109.47336 * 336.24092 * 16 14 12 20 20 C 1.53001 * 117.49667 * 134.72392 * 11 10 2 21 21 C 1.52994 * 60.00051 * 252.51741 * 20 11 10 22 22 H 1.09000 * 109.47491 * 189.85391 * 1 2 3 23 23 H 1.08997 * 109.47274 * 309.86129 * 1 2 3 24 24 H 1.09005 * 109.46707 * 69.85170 * 1 2 3 25 25 H 1.08998 * 109.47084 * 192.05782 * 3 2 1 26 26 H 1.09004 * 109.46391 * 312.04896 * 3 2 1 27 27 H 1.09002 * 117.49648 * 214.98091 * 6 4 3 28 28 H 1.09000 * 117.49628 * 359.96499 * 6 4 3 29 29 H 1.08999 * 109.47646 * 60.00184 * 8 7 4 30 30 H 1.09009 * 109.46974 * 180.02562 * 8 7 4 31 31 H 1.09001 * 109.46927 * 299.99474 * 8 7 4 32 32 H 1.08996 * 109.47364 * 59.99864 * 9 7 4 33 33 H 1.08996 * 109.46951 * 180.02562 * 9 7 4 34 34 H 1.09003 * 109.47331 * 299.99767 * 9 7 4 35 35 H 1.09002 * 109.47556 * 47.81757 * 10 2 1 36 36 H 1.09003 * 109.47325 * 167.81598 * 10 2 1 37 37 H 0.96999 * 120.00039 * 180.02562 * 15 14 12 38 38 H 1.08998 * 117.50110 * 0.02562 * 20 11 10 39 39 H 1.09003 * 117.49315 * 145.02513 * 20 11 10 40 40 H 1.09003 * 117.49831 * 252.50901 * 21 20 11 41 41 H 1.08999 * 117.49908 * 107.49506 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7633 2.0069 1.3722 5 1 0.9422 1.5859 1.9524 6 6 2.9920 2.4981 2.1403 7 6 2.0292 3.5074 1.5100 8 6 2.5063 4.2575 0.2647 9 6 1.1225 4.3019 2.4520 10 6 1.9954 -0.7661 -1.1374 11 6 1.7662 -2.2596 -0.8963 12 6 2.7507 -2.9271 0.0291 13 1 2.4205 -3.7120 0.6934 14 6 4.0728 -2.5360 0.0275 15 7 4.8981 -3.0042 0.9380 16 14 4.6916 -1.3408 -1.2679 17 1 4.6801 0.0376 -0.7156 18 1 6.0773 -1.7065 -1.6570 19 1 3.8095 -1.4034 -2.4609 20 6 1.2170 -3.0869 -2.0602 21 6 0.3195 -2.7563 -0.8662 22 1 -0.3634 -1.0125 0.1759 23 1 -0.3634 0.6586 0.7888 24 1 -0.3633 0.3540 -0.9648 25 1 3.0639 1.3504 -0.2147 26 1 1.4830 1.9572 -0.7632 27 1 2.9791 2.4005 3.2258 28 1 3.9658 2.3679 1.6682 29 1 1.7574 4.1688 -0.5222 30 1 2.6546 5.3095 0.5088 31 1 3.4475 3.8286 -0.0793 32 1 1.2068 3.9006 3.4618 33 1 1.4252 5.3490 2.4503 34 1 0.0891 4.2224 2.1145 35 1 1.4814 -0.4622 -2.0493 36 1 3.0634 -0.5746 -1.2413 37 1 5.8281 -2.7287 0.9371 38 1 1.0193 -2.5674 -2.9978 39 1 1.5678 -4.1144 -2.1569 40 1 0.0797 -3.5663 -0.1773 41 1 -0.4691 -2.0193 -1.0181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602901775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:56 Heat of formation + Delta-G solvation = 54.773745 kcal Electronic energy + Delta-G solvation = -17842.228410 eV Core-core repulsion = 15337.952804 eV Total energy + Delta-G solvation = -2504.275606 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29127 -39.13664 -36.31456 -34.28902 -30.64592 -29.57925 -28.73806 -27.68661 -27.20571 -23.77107 -23.06023 -21.68686 -21.00891 -19.54326 -18.22051 -17.71809 -16.74481 -16.00102 -15.78343 -15.56610 -15.05177 -14.88610 -14.69665 -14.48103 -13.75063 -13.54431 -13.53542 -13.21745 -13.08488 -13.02227 -12.81595 -12.72393 -12.36455 -12.29014 -11.98509 -11.79082 -11.32161 -11.26987 -11.09797 -10.71162 -10.47670 -10.37837 -10.27609 -9.03102 -8.28175 -6.22840 1.22588 1.32698 1.41716 2.31669 2.65409 2.87675 3.12356 3.57854 3.71017 3.85974 3.91690 4.09620 4.10708 4.20244 4.33969 4.44737 4.44823 4.48414 4.55505 4.66865 4.75307 4.79578 4.81635 4.83983 4.90781 4.92593 5.04309 5.05149 5.06285 5.08483 5.18759 5.26077 5.29613 5.31784 5.49332 5.52230 5.73929 6.25284 6.27186 6.38973 6.75268 7.36780 8.89223 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.008450 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.782446 B = 3312.640879 C = 3857.991088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.545 5.545 3 C 0.087 3.913 4 C -0.141 4.141 5 H 0.106 0.894 6 C -0.184 4.184 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.109 4.109 10 C 0.093 3.907 11 C -0.013 4.013 12 C -0.467 4.467 13 H 0.028 0.972 14 C 0.021 3.979 15 N -0.947 5.947 16 Si 0.960 3.040 17 H -0.275 1.275 18 H -0.310 1.310 19 H -0.246 1.246 20 C -0.201 4.201 21 C -0.174 4.174 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 15.698 -2.988 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.269 5.269 3 C -0.041 4.041 4 C -0.160 4.160 5 H 0.124 0.876 6 C -0.221 4.221 7 C -0.114 4.114 8 C -0.173 4.173 9 C -0.166 4.166 10 C -0.033 4.033 11 C -0.014 4.014 12 C -0.504 4.504 13 H 0.046 0.954 14 C -0.176 4.176 15 N -0.588 5.588 16 Si 0.791 3.209 17 H -0.203 1.203 18 H -0.240 1.240 19 H -0.171 1.171 20 C -0.239 4.239 21 C -0.211 4.211 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.476 15.464 -2.485 17.809 hybrid contribution 0.699 0.076 -0.790 1.057 sum -7.777 15.540 -3.275 17.683 Atomic orbital electron populations 1.22785 0.86311 1.03464 1.00436 1.61648 1.09015 1.12516 1.43681 1.21662 0.98497 0.88078 0.95865 1.22340 1.00457 0.95959 0.97223 0.87622 1.23306 0.94268 1.04790 0.99758 1.21807 1.00724 0.89779 0.99058 1.21372 1.00329 1.00273 0.95331 1.21347 0.98388 0.99595 0.97314 1.22004 0.97220 0.93237 0.90859 1.19209 0.94051 0.90679 0.97489 1.20447 0.92533 1.18229 1.19211 0.95364 1.25720 0.97005 0.97800 0.97033 1.70046 1.05493 1.47524 1.35696 0.85750 0.75288 0.78757 0.81085 1.20263 1.23976 1.17071 1.23209 1.06489 1.01147 0.93083 1.23034 0.93953 1.03161 1.00913 0.90226 0.90582 0.94990 0.93620 0.93345 0.88566 0.90639 0.91718 0.90315 0.93720 0.92523 0.90691 0.91529 0.94145 0.94126 0.92777 0.88757 0.90684 0.91027 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.41 127.69 1.07 1.61 16 2 N -0.54 -21.28 4.67 -922.48 -4.31 -25.59 16 3 C 0.09 2.95 4.43 86.30 0.38 3.33 16 4 C -0.14 -4.24 5.32 -10.79 -0.06 -4.30 16 5 H 0.11 3.20 6.89 -2.39 -0.02 3.18 16 6 C -0.18 -5.44 9.47 30.62 0.29 -5.15 16 7 C -0.11 -2.68 2.70 -52.16 -0.14 -2.82 16 8 C -0.12 -2.43 8.82 71.98 0.64 -1.80 16 9 C -0.11 -2.00 9.85 71.98 0.71 -1.29 16 10 C 0.09 3.97 3.74 86.31 0.32 4.29 16 11 C -0.01 -0.61 1.49 -52.93 -0.08 -0.69 16 12 C -0.47 -27.50 9.60 25.60 0.25 -27.25 16 13 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 14 C 0.02 1.28 5.45 84.65 0.46 1.74 16 15 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 16 Si 0.96 47.47 24.35 68.60 1.67 49.14 16 17 H -0.27 -13.10 6.09 99.48 0.61 -12.49 16 18 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 19 H -0.25 -11.10 6.24 99.48 0.62 -10.48 16 20 C -0.20 -8.16 9.88 30.59 0.30 -7.86 16 21 C -0.17 -6.83 8.30 30.59 0.25 -6.57 16 22 H 0.08 2.59 4.70 -2.39 -0.01 2.58 16 23 H 0.08 2.07 6.59 -2.39 -0.02 2.05 16 24 H 0.03 0.87 7.99 -2.38 -0.02 0.85 16 25 H 0.05 1.76 6.49 -2.39 -0.02 1.75 16 26 H 0.05 1.44 7.43 -2.38 -0.02 1.42 16 27 H 0.10 2.69 8.05 -2.39 -0.02 2.67 16 28 H 0.08 2.44 7.94 -2.39 -0.02 2.43 16 29 H 0.06 1.27 7.70 -2.39 -0.02 1.25 16 30 H 0.08 1.31 7.92 -2.38 -0.02 1.29 16 31 H 0.04 1.04 7.90 -2.39 -0.02 1.02 16 32 H 0.06 1.04 7.90 -2.39 -0.02 1.02 16 33 H 0.07 1.12 7.92 -2.39 -0.02 1.10 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 1.52 7.76 -2.39 -0.02 1.50 16 36 H 0.04 1.88 1.15 -2.39 0.00 1.88 16 37 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.09 3.29 8.09 -2.39 -0.02 3.27 16 39 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.11 3.66 5.70 -2.39 -0.01 3.64 16 Total: -1.00 -67.41 308.80 2.86 -64.55 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.80 Total: 19.44 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 4.40 Total: -46.76 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.01 Total: -86.37 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.67 Total: 49.14 kcal Total: -67.41 2.86 -64.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602901775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.321 kcal (2) G-P(sol) polarization free energy of solvation -67.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds