Wall clock time and date at job start Sun Mar 29 2020 22:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 110.99837 * 2 1 4 4 C 1.53005 * 109.47061 * 66.04820 * 3 2 1 5 5 H 1.08998 * 115.55111 * 29.41812 * 4 3 2 6 6 C 1.52998 * 117.49720 * 243.74061 * 4 3 2 7 7 C 1.53000 * 117.49524 * 175.08224 * 4 3 2 8 8 C 1.53000 * 117.49761 * 214.97381 * 7 4 3 9 9 C 1.52999 * 117.50290 * 0.02562 * 7 4 3 10 10 C 1.46898 * 111.00021 * 236.04374 * 2 1 3 11 11 C 1.53004 * 109.47630 * 287.47228 * 10 2 1 12 12 C 1.50698 * 115.55024 * 66.84532 * 11 10 2 13 13 H 1.08002 * 119.99969 * 215.41137 * 12 11 10 14 14 C 1.37879 * 119.99883 * 35.68788 * 12 11 10 15 15 N 1.31506 * 120.00020 * 13.10186 * 14 12 11 16 16 Si 1.86806 * 119.99890 * 193.09852 * 14 12 11 17 17 H 1.48496 * 109.46914 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.46777 * 119.99879 * 16 14 12 19 19 H 1.48490 * 109.47045 * 240.00063 * 16 14 12 20 20 C 1.53001 * 117.49776 * 212.52098 * 11 10 2 21 21 C 1.52995 * 117.49455 * 281.18120 * 11 10 2 22 22 H 1.09004 * 109.47190 * 191.83842 * 1 2 3 23 23 H 1.09003 * 109.47216 * 311.83243 * 1 2 3 24 24 H 1.08996 * 109.47183 * 71.83877 * 1 2 3 25 25 H 1.09002 * 109.46978 * 186.04636 * 3 2 1 26 26 H 1.08996 * 109.47603 * 306.04445 * 3 2 1 27 27 H 1.09003 * 117.50150 * 0.02562 * 6 4 3 28 28 H 1.09004 * 117.49735 * 145.02207 * 6 4 3 29 29 H 1.09007 * 109.46955 * 60.00972 * 8 7 4 30 30 H 1.09003 * 109.47260 * 180.02562 * 8 7 4 31 31 H 1.08997 * 109.47405 * 300.00889 * 8 7 4 32 32 H 1.08993 * 109.47179 * 59.99682 * 9 7 4 33 33 H 1.08998 * 109.47042 * 179.97438 * 9 7 4 34 34 H 1.09004 * 109.46792 * 299.99597 * 9 7 4 35 35 H 1.08992 * 109.47329 * 167.46609 * 10 2 1 36 36 H 1.09004 * 109.47071 * 47.46910 * 10 2 1 37 37 H 0.97010 * 119.99971 * 184.95108 * 15 14 12 38 38 H 1.08999 * 117.49606 * 214.99745 * 20 11 10 39 39 H 1.08993 * 117.49923 * 0.02562 * 20 11 10 40 40 H 1.09003 * 117.50054 * 359.97149 * 21 11 10 41 41 H 1.09001 * 117.49863 * 144.97132 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 1 1.5340 1.3975 2.1804 6 6 0.7036 3.2720 1.2500 7 6 2.1903 3.4606 1.5623 8 6 2.5690 3.8304 2.9978 9 6 3.0698 4.0707 0.4691 10 6 1.9954 -0.7660 -1.1375 11 6 1.7739 -2.2600 -0.8928 12 6 0.3360 -2.7109 -0.8835 13 1 0.0210 -3.4974 -0.2136 14 6 -0.5762 -2.1235 -1.7343 15 7 -0.1585 -1.3639 -2.7233 16 14 -2.4054 -2.4066 -1.4822 17 1 -2.6120 -3.2924 -0.3084 18 1 -3.0794 -1.1050 -1.2443 19 1 -2.9786 -3.0469 -2.6932 20 6 2.8150 -3.2300 -1.4552 21 6 2.7438 -2.9724 0.0521 22 1 -0.3634 -1.0058 0.2108 23 1 -0.3634 0.6854 0.7657 24 1 -0.3633 0.3203 -0.9764 25 1 3.0797 1.3443 -0.1082 26 1 1.5611 1.9273 -0.8309 27 1 0.3522 3.5823 0.2659 28 1 -0.0039 3.4115 2.0673 29 1 3.3384 3.1474 3.3580 30 1 2.9493 4.8517 3.0216 31 1 1.6889 3.7558 3.6365 32 1 2.4996 4.1448 -0.4568 33 1 3.3940 5.0650 0.7763 34 1 3.9422 3.4371 0.3089 35 1 3.0621 -0.5697 -1.2453 36 1 1.4771 -0.4664 -2.0484 37 1 -0.8003 -0.8930 -3.2777 38 1 2.4598 -4.1943 -1.8185 39 1 3.6578 -2.8038 -1.9992 40 1 3.5399 -2.3768 0.4989 41 1 2.3417 -3.7670 0.6806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602901776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:58 Heat of formation + Delta-G solvation = 52.425958 kcal Electronic energy + Delta-G solvation = -17803.666343 eV Core-core repulsion = 15299.288929 eV Total energy + Delta-G solvation = -2504.377414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.74017 -37.12854 -34.43405 -32.27107 -29.36565 -27.66494 -26.48483 -26.16852 -25.35568 -21.78031 -21.00966 -20.18821 -18.89096 -18.29203 -16.06716 -15.24814 -14.74382 -14.48400 -14.13479 -13.81845 -13.48996 -13.43947 -12.93770 -12.39386 -12.32029 -12.14410 -11.84298 -11.64541 -11.47380 -11.17416 -11.10469 -10.83715 -10.70565 -10.42506 -10.31200 -10.17794 -10.02047 -9.50765 -9.33288 -9.07475 -8.95139 -8.57180 -8.00088 -7.08293 -6.00463 -4.00987 3.24001 3.34455 3.38412 3.93986 4.36171 4.70209 4.94273 4.98693 5.08564 5.18761 5.39976 5.68746 5.71532 5.72306 5.85844 5.95809 6.01424 6.03415 6.06253 6.16167 6.16511 6.22501 6.33907 6.42939 6.45954 6.62040 6.71629 6.78023 6.84617 6.87009 7.00553 7.06387 7.31752 7.44918 7.49198 7.60444 7.97605 8.33247 8.37720 8.51643 8.91112 9.50308 10.94257 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.007451 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.654017 B = 3756.946719 C = 4372.173660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.526 5.526 3 C 0.087 3.913 4 C -0.122 4.122 5 H 0.109 0.891 6 C -0.177 4.177 7 C -0.137 4.137 8 C -0.111 4.111 9 C -0.112 4.112 10 C 0.081 3.919 11 C 0.062 3.938 12 C -0.475 4.475 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.875 5.875 16 Si 0.875 3.125 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.285 1.285 20 C -0.207 4.207 21 C -0.199 4.199 22 H 0.099 0.901 23 H 0.029 0.971 24 H 0.025 0.975 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.095 0.905 37 H 0.259 0.741 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.469 9.231 5.960 11.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.249 5.249 3 C -0.041 4.041 4 C -0.140 4.140 5 H 0.127 0.873 6 C -0.214 4.214 7 C -0.137 4.137 8 C -0.168 4.168 9 C -0.169 4.169 10 C -0.045 4.045 11 C 0.061 3.939 12 C -0.512 4.512 13 H 0.078 0.922 14 C -0.127 4.127 15 N -0.513 5.513 16 Si 0.702 3.298 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.211 1.211 20 C -0.246 4.246 21 C -0.236 4.236 22 H 0.118 0.882 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.547 9.059 6.183 11.527 hybrid contribution -1.235 0.278 -0.662 1.428 sum 2.312 9.337 5.521 11.091 Atomic orbital electron populations 1.22725 0.87433 1.03705 0.98340 1.61883 1.08524 1.09667 1.44850 1.21573 0.98916 0.90482 0.93163 1.22483 1.02070 0.89078 1.00394 0.87328 1.23300 0.92040 1.03779 1.02284 1.21602 0.95468 1.00452 0.96191 1.21308 1.01183 1.00786 0.93495 1.21294 0.99047 0.99655 0.96917 1.21892 0.95644 0.93054 0.93952 1.18854 0.90335 0.89112 0.95550 1.20559 0.91710 1.19601 1.19299 0.92247 1.24891 0.98499 0.95502 0.93782 1.69898 1.33591 1.31227 1.16620 0.86827 0.86234 0.78398 0.78365 1.19435 1.20505 1.21093 1.22958 1.03652 1.02864 0.95096 1.22741 1.04557 1.04363 0.91951 0.88242 0.95193 0.95630 0.91851 0.96007 0.89321 0.89423 0.92335 0.92646 0.92737 0.92577 0.92740 0.92251 0.95588 0.88744 0.93082 0.90705 0.92038 0.91455 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 7.81 60.06 0.47 1.05 16 2 N -0.53 -11.42 4.71 -242.92 -1.15 -12.57 16 3 C 0.09 1.60 4.31 -3.83 -0.02 1.58 16 4 C -0.12 -1.92 4.39 -90.62 -0.40 -2.32 16 5 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 6 C -0.18 -2.49 9.38 -26.69 -0.25 -2.74 16 7 C -0.14 -1.79 2.70 -154.47 -0.42 -2.20 16 8 C -0.11 -1.23 9.85 37.16 0.37 -0.86 16 9 C -0.11 -1.35 8.86 37.16 0.33 -1.02 16 10 C 0.08 1.94 4.71 -3.82 -0.02 1.92 16 11 C 0.06 1.55 1.96 -155.66 -0.31 1.25 16 12 C -0.47 -12.63 6.96 -34.44 -0.24 -12.87 16 13 H 0.06 1.61 7.85 -52.49 -0.41 1.20 16 14 C 0.07 1.96 2.99 -17.82 -0.05 1.90 16 15 N -0.88 -23.48 9.74 55.43 0.54 -22.94 16 16 Si 0.88 20.39 28.85 -169.99 -4.90 15.48 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.21 -4.82 9.92 -26.69 -0.26 -5.09 16 21 C -0.20 -4.50 9.96 -26.69 -0.27 -4.76 16 22 H 0.10 2.44 4.35 -51.93 -0.23 2.22 16 23 H 0.03 0.60 6.89 -51.93 -0.36 0.24 16 24 H 0.03 0.61 6.65 -51.93 -0.35 0.26 16 25 H 0.06 1.13 7.49 -51.93 -0.39 0.74 16 26 H 0.02 0.42 7.85 -51.93 -0.41 0.01 16 27 H 0.09 1.28 7.94 -51.93 -0.41 0.87 16 28 H 0.09 1.14 8.05 -51.93 -0.42 0.73 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 32 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 33 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 34 H 0.06 0.72 7.84 -51.93 -0.41 0.31 16 35 H 0.03 0.59 7.74 -51.93 -0.40 0.18 16 36 H 0.10 2.48 5.18 -51.93 -0.27 2.21 16 37 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 38 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -26.35 315.05 -9.19 -35.54 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.36 Total: 3.92 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -1.06 Total: -24.17 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.61 Total: -35.51 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.90 Total: 15.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.35 -9.19 -35.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602901776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.964 kcal (2) G-P(sol) polarization free energy of solvation -26.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds