Wall clock time and date at job start Sun Mar 29 2020 22:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 110.99837 * 2 1 4 4 C 1.53005 * 109.47061 * 66.04820 * 3 2 1 5 5 H 1.08998 * 115.55111 * 29.41812 * 4 3 2 6 6 C 1.52998 * 117.49720 * 243.74061 * 4 3 2 7 7 C 1.53000 * 117.49524 * 175.08224 * 4 3 2 8 8 C 1.53000 * 117.49761 * 214.97381 * 7 4 3 9 9 C 1.52999 * 117.50290 * 0.02562 * 7 4 3 10 10 C 1.46898 * 111.00021 * 236.04374 * 2 1 3 11 11 C 1.53004 * 109.47630 * 287.47228 * 10 2 1 12 12 C 1.50698 * 115.55024 * 66.84532 * 11 10 2 13 13 H 1.08002 * 119.99969 * 215.41137 * 12 11 10 14 14 C 1.37879 * 119.99883 * 35.68788 * 12 11 10 15 15 N 1.31506 * 120.00020 * 13.10186 * 14 12 11 16 16 Si 1.86806 * 119.99890 * 193.09852 * 14 12 11 17 17 H 1.48496 * 109.46914 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.46777 * 119.99879 * 16 14 12 19 19 H 1.48490 * 109.47045 * 240.00063 * 16 14 12 20 20 C 1.53001 * 117.49776 * 212.52098 * 11 10 2 21 21 C 1.52995 * 117.49455 * 281.18120 * 11 10 2 22 22 H 1.09004 * 109.47190 * 191.83842 * 1 2 3 23 23 H 1.09003 * 109.47216 * 311.83243 * 1 2 3 24 24 H 1.08996 * 109.47183 * 71.83877 * 1 2 3 25 25 H 1.09002 * 109.46978 * 186.04636 * 3 2 1 26 26 H 1.08996 * 109.47603 * 306.04445 * 3 2 1 27 27 H 1.09003 * 117.50150 * 0.02562 * 6 4 3 28 28 H 1.09004 * 117.49735 * 145.02207 * 6 4 3 29 29 H 1.09007 * 109.46955 * 60.00972 * 8 7 4 30 30 H 1.09003 * 109.47260 * 180.02562 * 8 7 4 31 31 H 1.08997 * 109.47405 * 300.00889 * 8 7 4 32 32 H 1.08993 * 109.47179 * 59.99682 * 9 7 4 33 33 H 1.08998 * 109.47042 * 179.97438 * 9 7 4 34 34 H 1.09004 * 109.46792 * 299.99597 * 9 7 4 35 35 H 1.08992 * 109.47329 * 167.46609 * 10 2 1 36 36 H 1.09004 * 109.47071 * 47.46910 * 10 2 1 37 37 H 0.97010 * 119.99971 * 184.95108 * 15 14 12 38 38 H 1.08999 * 117.49606 * 214.99745 * 20 11 10 39 39 H 1.08993 * 117.49923 * 0.02562 * 20 11 10 40 40 H 1.09003 * 117.50054 * 359.97149 * 21 11 10 41 41 H 1.09001 * 117.49863 * 144.97132 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 1 1.5340 1.3975 2.1804 6 6 0.7036 3.2720 1.2500 7 6 2.1903 3.4606 1.5623 8 6 2.5690 3.8304 2.9978 9 6 3.0698 4.0707 0.4691 10 6 1.9954 -0.7660 -1.1375 11 6 1.7739 -2.2600 -0.8928 12 6 0.3360 -2.7109 -0.8835 13 1 0.0210 -3.4974 -0.2136 14 6 -0.5762 -2.1235 -1.7343 15 7 -0.1585 -1.3639 -2.7233 16 14 -2.4054 -2.4066 -1.4822 17 1 -2.6120 -3.2924 -0.3084 18 1 -3.0794 -1.1050 -1.2443 19 1 -2.9786 -3.0469 -2.6932 20 6 2.8150 -3.2300 -1.4552 21 6 2.7438 -2.9724 0.0521 22 1 -0.3634 -1.0058 0.2108 23 1 -0.3634 0.6854 0.7657 24 1 -0.3633 0.3203 -0.9764 25 1 3.0797 1.3443 -0.1082 26 1 1.5611 1.9273 -0.8309 27 1 0.3522 3.5823 0.2659 28 1 -0.0039 3.4115 2.0673 29 1 3.3384 3.1474 3.3580 30 1 2.9493 4.8517 3.0216 31 1 1.6889 3.7558 3.6365 32 1 2.4996 4.1448 -0.4568 33 1 3.3940 5.0650 0.7763 34 1 3.9422 3.4371 0.3089 35 1 3.0621 -0.5697 -1.2453 36 1 1.4771 -0.4664 -2.0484 37 1 -0.8003 -0.8930 -3.2777 38 1 2.4598 -4.1943 -1.8185 39 1 3.6578 -2.8038 -1.9992 40 1 3.5399 -2.3768 0.4989 41 1 2.3417 -3.7670 0.6806 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602901776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:58 Heat of formation + Delta-G solvation = 39.352175 kcal Electronic energy + Delta-G solvation = -17804.233265 eV Core-core repulsion = 15299.288929 eV Total energy + Delta-G solvation = -2504.944336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05167 -38.81835 -36.12656 -34.26186 -30.50489 -28.74451 -28.08044 -27.91938 -27.13716 -23.37750 -22.82292 -21.54336 -20.79763 -19.46463 -18.01577 -16.81746 -16.47620 -15.96350 -15.81795 -15.24486 -15.05621 -14.61469 -14.40409 -14.05499 -13.68928 -13.43707 -13.24100 -13.13389 -12.86728 -12.79060 -12.69259 -12.34449 -12.19974 -12.12771 -12.00052 -11.94842 -11.83165 -11.12866 -10.90548 -10.62989 -10.48654 -10.34367 -9.92444 -8.88439 -7.99532 -6.06180 1.36827 1.43158 1.51336 2.42037 2.79620 2.99735 3.31762 3.79333 3.87724 3.90050 4.06460 4.23916 4.35278 4.48711 4.59745 4.62856 4.76260 4.79116 4.82368 4.88196 4.94611 4.95902 5.00030 5.03288 5.08030 5.09392 5.11505 5.17705 5.21549 5.31073 5.36092 5.44696 5.53479 5.58946 5.60656 5.62840 6.00927 6.49132 6.53735 6.64811 6.89852 7.46737 8.92548 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.007451 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.654017 B = 3756.946719 C = 4372.173660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.529 5.529 3 C 0.094 3.906 4 C -0.142 4.142 5 H 0.099 0.901 6 C -0.176 4.176 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.114 4.114 10 C 0.091 3.909 11 C 0.033 3.967 12 C -0.491 4.491 13 H 0.046 0.954 14 C 0.048 3.952 15 N -0.893 5.893 16 Si 0.922 3.078 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.286 1.286 20 C -0.206 4.206 21 C -0.181 4.181 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.004 0.996 25 H 0.067 0.933 26 H 0.012 0.988 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 10.489 7.120 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.252 5.252 3 C -0.034 4.034 4 C -0.161 4.161 5 H 0.117 0.883 6 C -0.213 4.213 7 C -0.118 4.118 8 C -0.167 4.167 9 C -0.171 4.171 10 C -0.037 4.037 11 C 0.032 3.968 12 C -0.528 4.528 13 H 0.064 0.936 14 C -0.152 4.152 15 N -0.532 5.532 16 Si 0.748 3.252 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.245 4.245 21 C -0.218 4.218 22 H 0.096 0.904 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.085 0.915 26 H 0.030 0.970 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.971 10.318 7.351 13.277 hybrid contribution -1.329 -0.112 -1.026 1.683 sum 2.642 10.206 6.325 12.294 Atomic orbital electron populations 1.22489 0.88019 1.02671 0.97653 1.61874 1.07995 1.11623 1.43747 1.21555 0.98847 0.88621 0.94416 1.22303 1.05109 0.90115 0.98552 0.88263 1.23346 0.93103 1.02348 1.02499 1.21760 0.94792 0.97435 0.97808 1.21344 1.01539 1.01931 0.91889 1.21341 0.98655 1.00831 0.96298 1.21672 0.95638 0.92813 0.93542 1.19013 0.90122 0.90027 0.97643 1.20657 0.93108 1.19753 1.19298 0.93614 1.25325 1.01251 0.95241 0.93402 1.70003 1.34430 1.31726 1.17030 0.86092 0.82641 0.78436 0.78066 1.19291 1.19850 1.21186 1.22955 1.03470 1.02152 0.95879 1.22713 1.03806 1.03762 0.91540 0.90367 0.93293 0.97723 0.91466 0.97017 0.89936 0.88210 0.92148 0.90744 0.92303 0.93384 0.90502 0.92347 0.94883 0.91357 0.93165 0.91417 0.90746 0.89983 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.79 7.81 127.69 1.00 2.79 16 2 N -0.53 -22.87 4.71 -922.47 -4.35 -27.22 16 3 C 0.09 3.37 4.31 86.31 0.37 3.75 16 4 C -0.14 -4.30 4.39 -10.79 -0.05 -4.35 16 5 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 6 C -0.18 -4.64 9.38 30.62 0.29 -4.35 16 7 C -0.12 -2.79 2.70 -52.16 -0.14 -2.93 16 8 C -0.11 -2.10 9.85 71.98 0.71 -1.39 16 9 C -0.11 -2.48 8.86 71.98 0.64 -1.84 16 10 C 0.09 4.32 4.71 86.31 0.41 4.73 16 11 C 0.03 1.63 1.96 -52.93 -0.10 1.52 16 12 C -0.49 -26.38 6.96 25.60 0.18 -26.20 16 13 H 0.05 2.52 7.85 -2.91 -0.02 2.49 16 14 C 0.05 2.52 2.99 84.66 0.25 2.78 16 15 N -0.89 -48.53 9.74 21.45 0.21 -48.32 16 16 Si 0.92 42.00 28.85 68.60 1.98 43.98 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 C -0.21 -9.47 9.92 30.62 0.30 -9.17 16 21 C -0.18 -8.00 9.96 30.62 0.30 -7.70 16 22 H 0.08 3.86 4.35 -2.39 -0.01 3.85 16 23 H 0.05 1.96 6.89 -2.39 -0.02 1.94 16 24 H 0.00 0.21 6.65 -2.39 -0.02 0.19 16 25 H 0.07 2.33 7.49 -2.39 -0.02 2.31 16 26 H 0.01 0.44 7.85 -2.39 -0.02 0.42 16 27 H 0.08 2.28 7.94 -2.39 -0.02 2.26 16 28 H 0.10 2.38 8.05 -2.39 -0.02 2.36 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.07 1.16 7.93 -2.39 -0.02 1.14 16 31 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 32 H 0.05 1.11 7.90 -2.39 -0.02 1.10 16 33 H 0.08 1.33 7.92 -2.39 -0.02 1.31 16 34 H 0.06 1.29 7.84 -2.39 -0.02 1.27 16 35 H 0.03 1.48 7.74 -2.39 -0.02 1.46 16 36 H 0.07 3.65 5.18 -2.39 -0.01 3.64 16 37 H 0.26 13.53 8.32 -92.70 -0.77 12.76 16 38 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -55.32 315.05 2.96 -52.36 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.97 Total: 21.57 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 4.16 Total: -42.37 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -4.14 Total: -75.54 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.98 Total: 43.98 kcal Total: -55.32 2.96 -52.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602901776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.709 kcal (2) G-P(sol) polarization free energy of solvation -55.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds