Wall clock time and date at job start Sun Mar 29 2020 21:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48490 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46716 * 299.99712 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99410 * 3 2 1 7 7 C 1.37875 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99979 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47050 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.46779 * 179.97438 * 10 9 7 12 12 N 1.46036 * 109.46803 * 179.97438 * 11 10 9 13 13 C 1.46131 * 113.10559 * 42.58745 * 12 11 10 14 14 C 1.52197 * 111.46135 * 68.71168 * 13 12 11 15 15 C 1.52428 * 112.19270 * 53.35548 * 14 13 12 16 16 C 1.52524 * 111.54358 * 311.90558 * 15 14 13 17 17 C 1.46189 * 113.13500 * 169.99764 * 12 11 10 18 18 C 1.52334 * 110.07520 * 168.49143 * 17 12 11 19 19 C 1.52076 * 112.81693 * 52.32817 * 18 17 12 20 20 C 1.52115 * 113.13903 * 315.94360 * 19 18 17 21 21 H 0.96996 * 120.00180 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47545 * 59.99164 * 9 7 2 23 23 H 1.09004 * 109.46897 * 299.99486 * 9 7 2 24 24 H 1.08998 * 109.46884 * 59.99932 * 10 9 7 25 25 H 1.08993 * 109.46765 * 299.99380 * 10 9 7 26 26 H 1.09001 * 109.47036 * 59.99950 * 11 10 9 27 27 H 1.08996 * 109.46911 * 299.99831 * 11 10 9 28 28 H 1.10089 * 108.05511 * 309.86560 * 13 12 11 29 29 H 1.09357 * 109.93411 * 291.21339 * 14 13 12 30 30 H 1.09851 * 108.84847 * 173.85659 * 14 13 12 31 31 H 1.10495 * 107.99080 * 193.47075 * 15 14 13 32 32 H 1.08355 * 111.29042 * 76.68064 * 15 14 13 33 33 H 1.09158 * 109.72507 * 286.75258 * 16 15 14 34 34 H 1.09796 * 108.81663 * 169.19423 * 16 15 14 35 35 H 1.10121 * 107.97695 * 50.63263 * 17 12 11 36 36 H 1.09690 * 108.99269 * 173.92036 * 18 17 12 37 37 H 1.09725 * 108.92414 * 290.88435 * 18 17 12 38 38 H 1.10801 * 107.80044 * 196.86724 * 19 18 17 39 39 H 1.08758 * 111.03702 * 81.47079 * 19 18 17 40 40 H 1.09620 * 109.33810 * 283.74723 * 20 19 18 41 41 H 1.09607 * 109.35785 * 165.99971 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4294 -6.0971 0.0006 13 6 3.5548 -5.8898 0.9093 14 6 3.1112 -5.9351 2.3645 15 6 2.3373 -7.2070 2.6912 16 6 1.2525 -7.4841 1.6555 17 6 1.7966 -7.3940 0.2346 18 6 2.7824 -8.5175 -0.0593 19 6 4.1032 -8.3504 0.6758 20 6 4.6377 -6.9271 0.6287 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 2.8720 -3.6042 0.8905 25 1 2.8719 -3.6043 -0.8895 26 1 0.8534 -5.0451 -0.8886 27 1 0.8540 -5.0446 0.8914 28 1 3.9768 -4.8931 0.7080 29 1 2.4934 -5.0623 2.5932 30 1 4.0000 -5.8857 3.0081 31 1 1.8448 -7.0649 3.6700 32 1 3.0024 -8.0558 2.7977 33 1 0.4284 -6.7807 1.7879 34 1 0.8569 -8.4952 1.8189 35 1 0.9496 -7.4896 -0.4626 36 1 2.3280 -9.4746 0.2248 37 1 2.9721 -8.5509 -1.1395 38 1 4.8487 -9.0082 0.1866 39 1 4.0264 -8.7034 1.7017 40 1 5.0679 -6.7334 -0.3608 41 1 5.4384 -6.8150 1.3688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610369937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:50 Heat of formation + Delta-G solvation = -27.825578 kcal Electronic energy + Delta-G solvation = -17881.321425 eV Core-core repulsion = 15373.464044 eV Total energy + Delta-G solvation = -2507.857382 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41013 -34.89030 -33.01729 -32.63962 -32.53325 -30.54425 -26.65230 -26.02596 -24.52538 -22.34962 -21.99580 -20.83430 -19.64322 -17.51287 -16.47542 -15.88163 -15.12697 -14.80126 -14.43703 -14.31589 -13.76805 -13.32917 -13.29135 -13.18562 -12.85365 -12.18502 -11.96955 -11.88134 -11.45937 -11.32579 -11.00996 -10.88176 -10.84742 -10.73629 -10.64009 -10.47877 -10.04345 -9.90775 -9.69252 -9.48879 -9.27943 -8.97788 -8.31522 -7.67083 -5.96791 -3.98639 3.32953 3.40297 3.44738 4.21582 4.49396 4.69754 4.89979 4.95332 5.01740 5.16565 5.27648 5.31624 5.34461 5.39153 5.55027 5.66783 5.79460 5.82234 5.91499 5.94723 5.97944 6.05332 6.08808 6.10505 6.14943 6.25629 6.28385 6.34395 6.40035 6.41204 6.66776 6.81115 6.89225 7.16918 7.64778 7.68273 7.72858 7.87807 8.04088 8.47537 9.08867 9.65267 11.14732 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041482 B = 0.005336 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.830011 B = 5246.102072 C = 5400.152964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.111 4.111 11 C 0.067 3.933 12 N -0.540 5.540 13 C 0.087 3.913 14 C -0.145 4.145 15 C -0.112 4.112 16 C -0.145 4.145 17 C 0.095 3.905 18 C -0.100 4.100 19 C -0.112 4.112 20 C -0.103 4.103 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.013 0.987 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.831 -17.155 3.029 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.149 4.149 11 C -0.060 4.060 12 N -0.263 5.263 13 C -0.022 4.022 14 C -0.184 4.184 15 C -0.149 4.149 16 C -0.184 4.184 17 C -0.014 4.014 18 C -0.138 4.138 19 C -0.149 4.149 20 C -0.141 4.141 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.031 0.969 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.859 -17.046 2.570 18.207 hybrid contribution -0.044 1.014 0.884 1.346 sum 5.816 -16.033 3.454 17.401 Atomic orbital electron populations 1.69976 1.06054 1.26395 1.51187 1.25026 0.94826 0.99224 0.95437 0.86559 0.80152 0.83903 0.77539 1.19742 1.21018 1.21083 1.21290 0.93034 0.91070 1.50107 0.92699 1.19068 0.94019 0.91372 0.97072 1.21792 0.99299 0.93200 1.00608 1.21986 0.93960 0.90082 0.99967 1.60407 1.11605 1.01766 1.52484 1.21327 0.91617 0.99924 0.89289 1.21868 1.00444 0.98011 0.98078 1.21329 0.97692 0.98055 0.97842 1.21906 0.98326 1.01585 0.96597 1.21185 0.95949 0.89792 0.94430 1.21255 0.95072 0.96866 1.00643 1.21260 0.96649 0.96684 1.00330 1.21336 0.96994 0.93951 1.01816 0.93126 0.96612 0.96875 0.93141 0.92703 0.91434 0.95329 0.89204 0.91625 0.92256 0.93551 0.91589 0.91923 0.92372 0.91104 0.92420 0.91863 0.93496 0.92166 0.91783 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.34 4.28 -26.72 -0.11 -2.46 16 11 C 0.07 1.20 4.80 -4.29 -0.02 1.18 16 12 N -0.54 -8.34 4.39 -221.15 -0.97 -9.32 16 13 C 0.09 1.26 2.09 -68.77 -0.14 1.11 16 14 C -0.14 -1.99 4.97 -27.43 -0.14 -2.13 16 15 C -0.11 -1.36 5.21 -27.27 -0.14 -1.50 16 16 C -0.14 -1.80 5.06 -27.27 -0.14 -1.94 16 17 C 0.10 1.25 2.57 -68.74 -0.18 1.07 16 18 C -0.10 -1.12 5.47 -27.54 -0.15 -1.27 16 19 C -0.11 -1.20 5.05 -27.65 -0.14 -1.34 16 20 C -0.10 -1.25 5.49 -27.41 -0.15 -1.40 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 1.04 5.83 -51.93 -0.30 0.74 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.03 0.53 6.44 -51.93 -0.33 0.19 16 28 H 0.09 1.46 5.72 -51.31 -0.29 1.16 16 29 H 0.07 1.04 7.49 -51.73 -0.39 0.65 16 30 H 0.06 0.74 8.17 -51.45 -0.42 0.32 16 31 H 0.05 0.55 8.27 -51.07 -0.42 0.13 16 32 H 0.07 0.72 5.51 -52.29 -0.29 0.44 16 33 H 0.06 0.86 7.02 -51.84 -0.36 0.50 16 34 H 0.06 0.63 8.18 -51.48 -0.42 0.21 16 35 H 0.07 0.94 8.17 -51.29 -0.42 0.52 16 36 H 0.06 0.56 8.17 -51.54 -0.42 0.13 16 37 H 0.06 0.72 8.20 -51.52 -0.42 0.30 16 38 H 0.05 0.45 8.29 -50.89 -0.42 0.03 16 39 H 0.06 0.61 5.72 -52.06 -0.30 0.31 16 40 H 0.06 0.80 8.19 -51.58 -0.42 0.38 16 41 H 0.06 0.64 8.15 -51.58 -0.42 0.22 16 LS Contribution 299.21 15.07 4.51 4.51 Total: -1.00 -29.72 299.21 -9.90 -39.62 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.29 Total: -3.25 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.86 Total: -21.88 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.23 Total: -35.92 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.72 -9.90 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610369937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.794 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds