Wall clock time and date at job start Sun Mar 29 2020 22:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 113.38539 * 2 1 4 4 C 1.53513 * 114.16933 * 133.08115 * 2 1 3 5 5 N 1.47480 * 87.93186 * 87.62400 * 4 2 1 6 6 C 1.46894 * 110.99849 * 138.70305 * 5 4 2 7 7 C 1.53002 * 109.47353 * 91.52736 * 6 5 4 8 8 C 1.50702 * 115.55683 * 325.68448 * 7 6 5 9 9 H 1.07999 * 120.00253 * 358.98440 * 8 7 6 10 10 C 1.37884 * 119.99889 * 178.98138 * 8 7 6 11 11 N 1.31512 * 119.99807 * 5.51661 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 185.51505 * 10 8 7 13 13 H 1.48499 * 109.46932 * 94.98035 * 12 10 8 14 14 H 1.48494 * 109.47133 * 214.98301 * 12 10 8 15 15 H 1.48500 * 109.47115 * 334.98165 * 12 10 8 16 16 C 1.52998 * 117.50021 * 180.02562 * 7 6 5 17 17 C 1.53005 * 60.02994 * 252.49261 * 16 7 6 18 18 C 1.47476 * 87.83668 * 27.00925 * 5 4 2 19 19 C 1.53005 * 113.47974 * 87.75916 * 18 5 4 20 20 C 1.53004 * 113.47698 * 218.22247 * 18 5 4 21 21 H 1.09007 * 109.47260 * 306.42580 * 1 2 3 22 22 H 1.09009 * 109.47212 * 66.42163 * 1 2 3 23 23 H 1.08998 * 109.47161 * 186.42348 * 1 2 3 24 24 H 1.08997 * 109.47392 * 173.57379 * 3 2 1 25 25 H 1.09007 * 109.47021 * 293.57776 * 3 2 1 26 26 H 1.09005 * 109.47168 * 53.57334 * 3 2 1 27 27 H 1.08999 * 113.47690 * 332.85295 * 4 2 1 28 28 H 1.09003 * 113.46961 * 202.38728 * 4 2 1 29 29 H 1.08999 * 109.47551 * 331.52428 * 6 5 4 30 30 H 1.09008 * 109.47079 * 211.52142 * 6 5 4 31 31 H 0.97002 * 119.99726 * 179.97438 * 11 10 8 32 32 H 1.08992 * 117.50377 * 359.97438 * 16 7 6 33 33 H 1.09008 * 117.49873 * 145.00028 * 16 7 6 34 34 H 1.09003 * 117.49358 * 107.50267 * 17 16 7 35 35 H 1.08994 * 117.49920 * 252.52084 * 17 16 7 36 36 H 1.08995 * 109.47194 * 79.49778 * 19 18 5 37 37 H 1.08993 * 109.47194 * 199.50940 * 19 18 5 38 38 H 1.09000 * 109.46494 * 319.50698 * 19 18 5 39 39 H 1.09003 * 109.46611 * 40.49670 * 20 18 5 40 40 H 1.08999 * 109.46940 * 160.49299 * 20 18 5 41 41 H 1.08994 * 109.46951 * 280.49921 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1372 1.4043 0.0000 4 6 2.1585 -0.9566 1.0229 5 7 2.0809 -2.0161 -0.0001 6 6 3.2985 -2.8380 0.0000 7 6 3.1074 -4.0327 0.9365 8 6 2.2678 -3.7715 2.1604 9 1 1.8609 -2.7867 2.3361 10 6 2.0191 -4.7901 3.0560 11 7 2.6018 -5.9588 2.9010 12 14 0.8545 -4.5098 4.4894 13 1 -0.5055 -4.9789 4.1212 14 1 1.3356 -5.2663 5.6732 15 1 0.8077 -3.0613 4.8132 16 6 4.2724 -5.0147 1.0757 17 6 3.0175 -5.4223 0.3009 18 6 2.1585 -0.9566 -1.0230 19 6 3.5919 -0.5830 -1.4062 20 6 1.2688 -1.2180 -2.2399 21 1 -0.3634 0.6102 0.8269 22 1 -0.3634 0.4111 -0.9419 23 1 -0.3633 -1.0212 0.1150 24 1 3.2187 1.3325 0.1150 25 1 1.9041 1.9010 -0.9419 26 1 1.7213 1.9801 0.8269 27 1 1.5246 -1.1428 1.8899 28 1 3.1797 -0.6905 1.2959 29 1 4.1416 -2.2385 0.3432 30 1 3.4949 -3.1963 -1.0106 31 1 2.4271 -6.6752 3.5312 32 1 5.1748 -4.8099 0.4998 33 1 4.4313 -5.4718 2.0524 34 1 3.0947 -5.4854 -0.7846 35 1 2.3509 -6.1471 0.7680 36 1 3.9860 -1.3225 -2.1033 37 1 3.5976 0.3998 -1.8773 38 1 4.2131 -0.5604 -0.5109 39 1 0.3133 -1.6262 -1.9104 40 1 1.0996 -0.2829 -2.7738 41 1 1.7595 -1.9310 -2.9023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690298840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:46 Heat of formation + Delta-G solvation = 64.462892 kcal Electronic energy + Delta-G solvation = -18367.252908 eV Core-core repulsion = 15863.397454 eV Total energy + Delta-G solvation = -2503.855453 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82948 -36.35561 -32.54445 -31.30492 -30.88755 -28.51283 -26.76110 -25.84151 -25.43977 -22.71775 -21.02267 -20.53413 -18.78460 -16.65270 -15.89829 -15.43159 -15.27421 -14.86722 -14.24839 -13.55893 -13.36080 -13.12112 -12.56308 -12.29879 -12.13227 -11.97688 -11.93115 -11.62364 -11.51709 -11.33624 -11.05005 -10.94825 -10.72467 -10.60156 -10.45094 -10.06842 -9.89493 -9.84580 -9.32638 -9.27608 -8.67520 -8.23525 -7.97645 -7.79247 -5.83424 -3.85206 3.34718 3.41909 3.43958 4.47875 4.49548 4.66337 5.04057 5.20649 5.34818 5.41730 5.51863 5.64247 5.76630 5.82424 5.84535 5.96549 6.00929 6.06661 6.07978 6.10878 6.15298 6.22518 6.26453 6.31999 6.38939 6.53376 6.54896 6.59567 6.65838 6.82583 6.90784 7.09380 7.18510 7.33889 7.47871 7.79489 7.99135 8.16641 8.35279 8.66950 9.10846 9.68022 11.13171 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025359 B = 0.009012 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.897002 B = 3106.257968 C = 3748.124847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.133 4.133 4 C 0.020 3.980 5 N -0.429 5.429 6 C 0.069 3.931 7 C 0.028 3.972 8 C -0.456 4.456 9 H 0.071 0.929 10 C 0.053 3.947 11 N -0.884 5.884 12 Si 0.891 3.109 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.275 1.275 16 C -0.195 4.195 17 C -0.186 4.186 18 C 0.046 3.954 19 C -0.153 4.153 20 C -0.122 4.122 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.255 0.745 32 H 0.035 0.965 33 H 0.114 0.886 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 11.688 -6.877 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.191 4.191 4 C -0.109 4.109 5 N -0.151 5.151 6 C -0.059 4.059 7 C 0.028 3.972 8 C -0.494 4.494 9 H 0.089 0.911 10 C -0.147 4.147 11 N -0.523 5.523 12 Si 0.720 3.280 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.200 1.200 16 C -0.233 4.233 17 C -0.224 4.224 18 C -0.045 4.045 19 C -0.211 4.211 20 C -0.180 4.180 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.302 10.983 -6.776 12.970 hybrid contribution 0.319 0.291 0.734 0.851 sum -0.983 11.274 -6.043 12.829 Atomic orbital electron populations 1.21450 0.92751 1.02781 1.00520 1.22135 0.96189 0.93507 0.97509 1.21703 1.00439 0.95802 1.01138 1.23884 0.99685 0.90703 0.96597 1.69040 1.34907 1.09432 1.01672 1.22127 0.90213 0.95542 0.98033 1.18885 0.97617 0.85775 0.94962 1.20789 1.28492 0.96651 1.03465 0.91119 1.25030 0.96266 0.95492 0.97940 1.70033 1.42401 1.03233 1.36679 0.86587 0.81383 0.78041 0.81999 1.20900 1.21609 1.19992 1.22932 0.89681 1.08399 1.02289 1.22733 1.02511 1.03726 0.93407 1.22784 0.94395 0.93188 0.94141 1.22055 0.96217 1.01220 1.01634 1.21569 1.00072 1.00251 0.96119 0.93123 0.93041 0.90999 0.92611 0.92918 0.92775 0.89516 0.92168 0.95176 0.93231 0.93459 0.94602 0.86805 0.94315 0.88004 0.92407 0.92338 0.92131 0.91468 0.93136 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 7.91 37.15 0.29 -1.33 16 2 C -0.09 -1.34 1.39 -153.98 -0.21 -1.56 16 3 C -0.13 -1.59 8.26 37.16 0.31 -1.28 16 4 C 0.02 0.36 5.14 -7.55 -0.04 0.32 16 5 N -0.43 -8.35 5.41 -228.56 -1.24 -9.59 16 6 C 0.07 1.47 4.11 -3.83 -0.02 1.45 16 7 C 0.03 0.72 2.53 -155.62 -0.39 0.33 16 8 C -0.46 -12.42 8.57 -34.44 -0.29 -12.72 16 9 H 0.07 1.87 4.52 -52.49 -0.24 1.63 16 10 C 0.05 1.46 5.25 -17.82 -0.09 1.37 16 11 N -0.88 -25.22 8.62 55.43 0.48 -24.74 16 12 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 C -0.19 -5.00 9.38 -26.73 -0.25 -5.25 16 17 C -0.19 -4.83 9.31 -26.69 -0.25 -5.08 16 18 C 0.05 0.70 1.20 -135.32 -0.16 0.54 16 19 C -0.15 -2.12 6.49 37.16 0.24 -1.88 16 20 C -0.12 -1.74 8.44 37.16 0.31 -1.42 16 21 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 22 H 0.05 0.62 7.74 -51.92 -0.40 0.22 16 23 H 0.07 1.14 7.65 -51.93 -0.40 0.74 16 24 H 0.05 0.66 6.82 -51.93 -0.35 0.30 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.71 6.58 -51.93 -0.34 1.36 16 28 H 0.06 1.07 6.56 -51.93 -0.34 0.73 16 29 H 0.03 0.62 5.92 -51.93 -0.31 0.31 16 30 H 0.05 1.03 7.40 -51.92 -0.38 0.64 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.11 3.21 6.16 -51.92 -0.32 2.89 16 34 H 0.04 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.10 2.91 6.41 -51.93 -0.33 2.58 16 36 H 0.06 0.80 7.72 -51.93 -0.40 0.40 16 37 H 0.06 0.69 7.48 -51.93 -0.39 0.30 16 38 H 0.06 0.88 5.54 -51.93 -0.29 0.59 16 39 H 0.07 1.01 7.13 -51.93 -0.37 0.64 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -28.27 301.70 -8.74 -37.01 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.95 Total: 2.75 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -0.56 Total: -26.51 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.76 Total: -34.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.27 -8.74 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690298840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.471 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds