Wall clock time and date at job start Sun Mar 29 2020 22:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 113.38539 * 2 1 4 4 C 1.53513 * 114.16933 * 133.08115 * 2 1 3 5 5 N 1.47480 * 87.93186 * 87.62400 * 4 2 1 6 6 C 1.46894 * 110.99849 * 138.70305 * 5 4 2 7 7 C 1.53002 * 109.47353 * 91.52736 * 6 5 4 8 8 C 1.50702 * 115.55683 * 325.68448 * 7 6 5 9 9 H 1.07999 * 120.00253 * 358.98440 * 8 7 6 10 10 C 1.37884 * 119.99889 * 178.98138 * 8 7 6 11 11 N 1.31512 * 119.99807 * 5.51661 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 185.51505 * 10 8 7 13 13 H 1.48499 * 109.46932 * 94.98035 * 12 10 8 14 14 H 1.48494 * 109.47133 * 214.98301 * 12 10 8 15 15 H 1.48500 * 109.47115 * 334.98165 * 12 10 8 16 16 C 1.52998 * 117.50021 * 180.02562 * 7 6 5 17 17 C 1.53005 * 60.02994 * 252.49261 * 16 7 6 18 18 C 1.47476 * 87.83668 * 27.00925 * 5 4 2 19 19 C 1.53005 * 113.47974 * 87.75916 * 18 5 4 20 20 C 1.53004 * 113.47698 * 218.22247 * 18 5 4 21 21 H 1.09007 * 109.47260 * 306.42580 * 1 2 3 22 22 H 1.09009 * 109.47212 * 66.42163 * 1 2 3 23 23 H 1.08998 * 109.47161 * 186.42348 * 1 2 3 24 24 H 1.08997 * 109.47392 * 173.57379 * 3 2 1 25 25 H 1.09007 * 109.47021 * 293.57776 * 3 2 1 26 26 H 1.09005 * 109.47168 * 53.57334 * 3 2 1 27 27 H 1.08999 * 113.47690 * 332.85295 * 4 2 1 28 28 H 1.09003 * 113.46961 * 202.38728 * 4 2 1 29 29 H 1.08999 * 109.47551 * 331.52428 * 6 5 4 30 30 H 1.09008 * 109.47079 * 211.52142 * 6 5 4 31 31 H 0.97002 * 119.99726 * 179.97438 * 11 10 8 32 32 H 1.08992 * 117.50377 * 359.97438 * 16 7 6 33 33 H 1.09008 * 117.49873 * 145.00028 * 16 7 6 34 34 H 1.09003 * 117.49358 * 107.50267 * 17 16 7 35 35 H 1.08994 * 117.49920 * 252.52084 * 17 16 7 36 36 H 1.08995 * 109.47194 * 79.49778 * 19 18 5 37 37 H 1.08993 * 109.47194 * 199.50940 * 19 18 5 38 38 H 1.09000 * 109.46494 * 319.50698 * 19 18 5 39 39 H 1.09003 * 109.46611 * 40.49670 * 20 18 5 40 40 H 1.08999 * 109.46940 * 160.49299 * 20 18 5 41 41 H 1.08994 * 109.46951 * 280.49921 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1372 1.4043 0.0000 4 6 2.1585 -0.9566 1.0229 5 7 2.0809 -2.0161 -0.0001 6 6 3.2985 -2.8380 0.0000 7 6 3.1074 -4.0327 0.9365 8 6 2.2678 -3.7715 2.1604 9 1 1.8609 -2.7867 2.3361 10 6 2.0191 -4.7901 3.0560 11 7 2.6018 -5.9588 2.9010 12 14 0.8545 -4.5098 4.4894 13 1 -0.5055 -4.9789 4.1212 14 1 1.3356 -5.2663 5.6732 15 1 0.8077 -3.0613 4.8132 16 6 4.2724 -5.0147 1.0757 17 6 3.0175 -5.4223 0.3009 18 6 2.1585 -0.9566 -1.0230 19 6 3.5919 -0.5830 -1.4062 20 6 1.2688 -1.2180 -2.2399 21 1 -0.3634 0.6102 0.8269 22 1 -0.3634 0.4111 -0.9419 23 1 -0.3633 -1.0212 0.1150 24 1 3.2187 1.3325 0.1150 25 1 1.9041 1.9010 -0.9419 26 1 1.7213 1.9801 0.8269 27 1 1.5246 -1.1428 1.8899 28 1 3.1797 -0.6905 1.2959 29 1 4.1416 -2.2385 0.3432 30 1 3.4949 -3.1963 -1.0106 31 1 2.4271 -6.6752 3.5312 32 1 5.1748 -4.8099 0.4998 33 1 4.4313 -5.4718 2.0524 34 1 3.0947 -5.4854 -0.7846 35 1 2.3509 -6.1471 0.7680 36 1 3.9860 -1.3225 -2.1033 37 1 3.5976 0.3998 -1.8773 38 1 4.2131 -0.5604 -0.5109 39 1 0.3133 -1.6262 -1.9104 40 1 1.0996 -0.2829 -2.7738 41 1 1.7595 -1.9310 -2.9023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690298840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:45 Heat of formation + Delta-G solvation = 48.251730 kcal Electronic energy + Delta-G solvation = -18367.955876 eV Core-core repulsion = 15863.397454 eV Total energy + Delta-G solvation = -2504.558422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.13396 -38.31178 -34.07182 -33.19503 -32.09937 -29.57243 -28.35420 -27.46856 -26.85207 -24.18858 -22.64947 -22.31227 -20.72063 -17.88395 -17.80548 -17.09171 -16.67079 -16.29311 -15.89592 -15.15448 -14.76168 -14.55952 -14.20180 -13.58035 -13.29184 -13.22648 -13.12624 -13.00901 -12.91949 -12.77975 -12.61867 -12.47942 -12.42226 -12.04326 -11.97729 -11.92102 -11.74863 -11.24438 -11.17414 -10.68980 -10.58123 -10.19234 -9.97096 -9.34527 -7.94740 -6.01987 1.39761 1.42102 1.50872 2.45580 3.05169 3.26618 3.43289 3.87080 3.94926 4.19829 4.25121 4.34591 4.43885 4.48263 4.57130 4.71940 4.75851 4.78777 4.86586 4.92774 4.95712 4.98365 5.01037 5.02461 5.09114 5.14587 5.18541 5.23157 5.28116 5.30427 5.38931 5.41336 5.52966 5.64050 5.72595 5.90017 6.01153 6.20589 6.49185 6.62151 7.01181 7.53711 9.00113 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025359 B = 0.009012 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.897002 B = 3106.257968 C = 3748.124847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.129 4.129 4 C 0.014 3.986 5 N -0.459 5.459 6 C 0.083 3.917 7 C 0.019 3.981 8 C -0.470 4.470 9 H 0.074 0.926 10 C 0.003 3.997 11 N -0.908 5.908 12 Si 0.950 3.050 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.266 1.266 16 C -0.194 4.194 17 C -0.189 4.189 18 C 0.045 3.955 19 C -0.149 4.149 20 C -0.120 4.120 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.252 0.748 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 14.175 -7.969 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.186 4.186 4 C -0.115 4.115 5 N -0.180 5.180 6 C -0.046 4.046 7 C 0.018 3.982 8 C -0.507 4.507 9 H 0.092 0.908 10 C -0.195 4.195 11 N -0.548 5.548 12 Si 0.777 3.223 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.190 1.190 16 C -0.233 4.233 17 C -0.227 4.227 18 C -0.045 4.045 19 C -0.207 4.207 20 C -0.178 4.178 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.582 13.483 -7.874 15.693 hybrid contribution 0.396 -0.501 1.062 1.239 sum -1.186 12.982 -6.811 14.708 Atomic orbital electron populations 1.21438 0.92283 1.01430 1.02178 1.22096 0.96468 0.94434 0.94816 1.21681 1.00357 0.93891 1.02690 1.23870 0.99470 0.91872 0.96326 1.68977 1.34000 1.11072 1.03981 1.21901 0.91392 0.94368 0.96911 1.19160 0.96705 0.87012 0.95283 1.21152 1.28595 0.96815 1.04179 0.90789 1.25759 0.97763 0.95465 1.00474 1.70197 1.43421 1.03785 1.37394 0.85652 0.79223 0.78259 0.79133 1.21010 1.21536 1.19019 1.22794 0.90581 1.08706 1.01195 1.22594 1.02245 1.03725 0.94154 1.22927 0.95841 0.91738 0.93976 1.22024 0.94645 1.02691 1.01324 1.21569 0.98989 1.01598 0.95631 0.92116 0.90792 0.93787 0.92461 0.90781 0.91940 0.92181 0.92332 0.94739 0.92859 0.93832 0.92294 0.89631 0.92466 0.91092 0.92628 0.89578 0.93090 0.92800 0.90246 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 7.91 71.98 0.57 -2.37 16 2 C -0.08 -2.06 1.39 -51.84 -0.07 -2.13 16 3 C -0.13 -2.58 8.26 71.98 0.59 -1.99 16 4 C 0.01 0.48 5.14 83.57 0.43 0.91 16 5 N -0.46 -17.53 5.41 -877.04 -4.74 -22.27 16 6 C 0.08 3.46 4.11 86.31 0.35 3.82 16 7 C 0.02 0.98 2.53 -52.90 -0.13 0.84 16 8 C -0.47 -25.96 8.57 25.60 0.22 -25.74 16 9 H 0.07 3.97 4.52 -2.91 -0.01 3.96 16 10 C 0.00 0.16 5.25 84.66 0.44 0.60 16 11 N -0.91 -53.25 8.62 21.45 0.18 -53.06 16 12 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 13 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 C -0.19 -10.10 9.38 30.60 0.29 -9.81 16 17 C -0.19 -9.97 9.31 30.62 0.29 -9.69 16 18 C 0.05 1.30 1.20 0.80 0.00 1.30 16 19 C -0.15 -3.69 6.49 71.98 0.47 -3.22 16 20 C -0.12 -3.10 8.44 71.98 0.61 -2.49 16 21 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 22 H 0.07 1.53 7.74 -2.38 -0.02 1.51 16 23 H 0.04 1.35 7.65 -2.39 -0.02 1.33 16 24 H 0.06 1.15 6.82 -2.39 -0.02 1.13 16 25 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.06 2.39 6.58 -2.39 -0.02 2.37 16 28 H 0.06 2.04 6.56 -2.39 -0.02 2.03 16 29 H 0.03 1.40 5.92 -2.39 -0.01 1.38 16 30 H 0.05 2.15 7.40 -2.38 -0.02 2.13 16 31 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.09 4.97 6.16 -2.38 -0.01 4.95 16 34 H 0.06 2.74 8.05 -2.39 -0.02 2.72 16 35 H 0.07 4.19 6.41 -2.39 -0.02 4.17 16 36 H 0.05 1.40 7.72 -2.39 -0.02 1.38 16 37 H 0.09 1.66 7.48 -2.39 -0.02 1.64 16 38 H 0.05 1.36 5.54 -2.39 -0.01 1.35 16 39 H 0.05 1.52 7.13 -2.39 -0.02 1.51 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -61.46 301.70 2.51 -58.95 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.99 Total: 19.31 kcal Atomic # 6 Polarization: -54.02 SS G_CDS: 4.05 Total: -49.96 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -4.56 Total: -75.33 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -61.46 2.51 -58.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690298840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.198 kcal (2) G-P(sol) polarization free energy of solvation -61.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds