Wall clock time and date at job start Sun Mar 29 2020 22:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 C 1.52998 * 109.47514 * 119.99946 * 2 1 3 5 5 N 1.46906 * 109.47131 * 69.21641 * 4 2 1 6 6 C 1.46899 * 110.99987 * 45.14521 * 5 4 2 7 7 C 1.50700 * 109.47141 * 66.04697 * 6 5 4 8 8 H 1.08004 * 119.99850 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00163 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00219 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99874 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47208 * 90.00137 * 11 9 7 13 13 H 1.48510 * 109.47252 * 209.99844 * 11 9 7 14 14 H 1.48501 * 109.47505 * 329.99709 * 11 9 7 15 15 C 1.46898 * 110.99597 * 281.19359 * 5 4 2 16 16 C 1.53004 * 109.47306 * 291.01884 * 15 5 4 17 17 C 1.54634 * 111.03786 * 288.76197 * 16 15 5 18 18 C 1.51098 * 104.72430 * 217.33271 * 17 16 15 19 19 C 1.30525 * 111.10821 * 16.43696 * 18 17 16 20 20 C 1.51104 * 111.10022 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47117 * 27.74517 * 1 2 3 22 22 H 1.09004 * 109.47151 * 147.74603 * 1 2 3 23 23 H 1.09005 * 109.47116 * 267.74062 * 1 2 3 24 24 H 1.09009 * 109.47189 * 239.99932 * 2 1 3 25 25 H 1.09001 * 109.46850 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46901 * 299.99920 * 3 2 1 27 27 H 1.08995 * 109.47064 * 59.99955 * 3 2 1 28 28 H 1.09004 * 109.47244 * 309.21896 * 4 2 1 29 29 H 1.09001 * 109.47515 * 189.21580 * 4 2 1 30 30 H 1.08999 * 109.46821 * 186.04860 * 6 5 4 31 31 H 1.09004 * 109.47090 * 306.04782 * 6 5 4 32 32 H 0.97004 * 119.99687 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.47672 * 51.02247 * 15 5 4 34 34 H 1.09003 * 109.47127 * 171.02348 * 15 5 4 35 35 H 1.09003 * 110.91079 * 52.77255 * 16 15 5 36 36 H 1.09001 * 110.38695 * 336.14176 * 17 16 15 37 37 H 1.08999 * 110.38206 * 98.52187 * 17 16 15 38 38 H 1.08006 * 124.44994 * 196.46172 * 18 17 16 39 39 H 1.08001 * 124.45148 * 180.02562 * 19 18 17 40 40 H 1.09002 * 110.38655 * 224.75148 * 20 19 18 41 41 H 1.09007 * 110.38320 * 102.37485 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.7400 -2.1554 1.1435 6 6 2.0774 -2.6668 -0.1916 7 6 3.5691 -2.5968 -0.3941 8 1 4.2031 -2.2113 0.3908 9 6 4.1246 -3.0258 -1.5807 10 7 5.4265 -2.9652 -1.7573 11 14 3.0282 -3.6931 -2.9379 12 1 2.6060 -2.5800 -3.8255 13 1 3.7785 -4.7006 -3.7301 14 1 1.8285 -4.3295 -2.3371 15 6 0.3332 -2.4243 1.4701 16 6 0.0999 -2.1779 2.9621 17 6 0.7724 -3.2763 3.8179 18 6 -0.1871 -3.5138 4.9607 19 6 -1.3660 -3.0206 4.6950 20 6 -1.3891 -2.3713 3.3308 21 1 -0.3633 0.9095 -0.4784 22 1 -0.3634 -0.8691 -0.5485 23 1 -0.3633 -0.0405 1.0269 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.5486 -0.3113 2.1316 29 1 3.1175 -0.5809 1.3353 30 1 1.7472 -3.7020 -0.2783 31 1 1.5792 -2.0618 -0.9491 32 1 5.8172 -3.2667 -2.5924 33 1 -0.3080 -1.7624 0.8879 34 1 0.0967 -3.4613 1.2319 35 1 0.4488 -1.1867 3.2519 36 1 0.9003 -4.1876 3.2338 37 1 1.7338 -2.9280 4.1954 38 1 0.0690 -4.0244 5.8774 39 1 -2.2134 -3.0695 5.3628 40 1 -1.8975 -1.4082 3.3772 41 1 -1.8770 -3.0248 2.6075 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692121930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:07 Heat of formation + Delta-G solvation = 20.378029 kcal Electronic energy + Delta-G solvation = -17850.537832 eV Core-core repulsion = 15344.770716 eV Total energy + Delta-G solvation = -2505.767116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.17545 -37.42318 -33.35682 -32.41553 -30.15735 -27.94833 -27.37184 -27.04175 -25.51147 -23.03577 -20.97814 -19.74775 -18.83780 -18.40017 -16.77300 -15.92234 -15.33651 -15.12249 -14.50854 -13.95464 -13.86073 -13.07329 -12.51443 -12.40385 -12.37825 -12.12854 -11.95350 -11.80924 -11.60747 -11.42217 -11.01741 -10.98404 -10.90549 -10.73613 -10.59283 -10.45103 -10.08609 -10.06546 -9.78197 -9.58469 -9.18408 -8.70977 -8.53610 -7.11184 -6.01659 -3.97671 2.39461 3.28512 3.36946 3.38872 4.44232 4.66487 4.89761 5.06591 5.23979 5.31637 5.41253 5.46812 5.48829 5.54743 5.60435 5.85937 5.89748 5.95474 5.97330 6.10149 6.12401 6.16942 6.22004 6.25344 6.27855 6.33275 6.41209 6.56853 6.61973 6.68291 6.70156 6.73723 6.91953 7.05145 7.07144 7.16319 7.67806 8.00356 8.16139 8.72447 9.08710 9.60986 11.11736 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.007614 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.706183 B = 3676.513448 C = 4244.530074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C -0.137 4.137 4 C 0.075 3.925 5 N -0.521 5.521 6 C 0.156 3.844 7 C -0.501 4.501 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.902 5.902 11 Si 0.870 3.130 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.037 3.963 16 C -0.084 4.084 17 C -0.086 4.086 18 C -0.162 4.162 19 C -0.180 4.180 20 C -0.096 4.096 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.023 0.977 31 H -0.005 1.005 32 H 0.262 0.738 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 3.692 8.138 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.195 4.195 4 C -0.054 4.054 5 N -0.243 5.243 6 C 0.030 3.970 7 C -0.539 4.539 8 H 0.097 0.903 9 C -0.133 4.133 10 N -0.541 5.541 11 Si 0.697 3.303 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.091 4.091 16 C -0.103 4.103 17 C -0.123 4.123 18 C -0.180 4.180 19 C -0.198 4.198 20 C -0.133 4.133 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.012 0.988 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.353 3.380 8.340 15.283 hybrid contribution -0.996 -0.061 -1.374 1.698 sum -13.349 3.319 6.966 15.418 Atomic orbital electron populations 1.22133 0.96714 1.00496 1.01006 1.21895 0.94654 0.96669 1.02955 1.21747 1.01370 0.96107 1.00247 1.22112 1.01306 0.87356 0.94593 1.62182 1.17021 1.14178 1.30938 1.20309 0.97637 0.94305 0.84782 1.21017 0.90012 1.41518 1.01359 0.90251 1.24880 0.94743 0.95612 0.98086 1.69895 1.10085 1.48312 1.25828 0.86943 0.81267 0.79328 0.82713 1.20416 1.21247 1.19227 1.22563 0.91578 1.00816 0.94115 1.22031 0.93529 0.99184 0.95533 1.21307 0.97897 0.99069 0.93986 1.23475 0.96149 0.99512 0.98886 1.23207 0.97777 1.01201 0.97617 1.21397 0.97346 0.99861 0.94744 0.93617 0.93012 0.92702 0.88634 0.92443 0.93654 0.93685 0.92816 0.90556 0.95950 0.98792 0.92800 0.93211 0.91968 0.90515 0.90378 0.91049 0.86528 0.86624 0.91836 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 7.79 37.16 0.29 -1.91 16 2 C -0.14 -2.49 2.41 -90.62 -0.22 -2.71 16 3 C -0.14 -2.11 8.99 37.16 0.33 -1.77 16 4 C 0.07 1.38 4.49 -3.82 -0.02 1.36 16 5 N -0.52 -10.46 4.60 -236.06 -1.09 -11.55 16 6 C 0.16 3.68 3.27 -4.98 -0.02 3.66 16 7 C -0.50 -13.94 9.03 -34.44 -0.31 -14.25 16 8 H 0.08 2.43 7.41 -52.48 -0.39 2.04 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 10 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 11 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 15 C 0.04 0.62 3.84 -3.82 -0.01 0.61 16 16 C -0.08 -1.21 3.12 -88.91 -0.28 -1.48 16 17 C -0.09 -1.25 6.30 -26.83 -0.17 -1.42 16 18 C -0.16 -2.02 10.77 -35.70 -0.38 -2.41 16 19 C -0.18 -2.12 10.78 -35.70 -0.38 -2.50 16 20 C -0.10 -1.18 6.38 -26.84 -0.17 -1.35 16 21 H 0.04 0.62 7.79 -51.93 -0.40 0.21 16 22 H 0.05 0.81 6.82 -51.93 -0.35 0.45 16 23 H 0.05 0.76 6.52 -51.93 -0.34 0.43 16 24 H 0.10 2.02 5.45 -51.92 -0.28 1.73 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.65 8.11 -51.93 -0.42 0.22 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.88 5.78 -51.93 -0.30 0.58 16 29 H 0.08 1.59 7.33 -51.93 -0.38 1.21 16 30 H 0.02 0.55 6.95 -51.93 -0.36 0.19 16 31 H -0.01 -0.12 4.75 -51.93 -0.25 -0.37 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.05 0.79 3.53 -51.93 -0.18 0.61 16 34 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 35 H 0.08 1.12 6.30 -51.93 -0.33 0.80 16 36 H 0.08 1.23 7.77 -51.93 -0.40 0.83 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.87 7.89 -51.92 -0.41 0.46 16 LS Contribution 306.51 15.07 4.62 4.62 Total: -1.00 -29.05 306.51 -8.71 -37.76 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.90 Total: 1.44 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -1.44 Total: -22.31 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.31 Total: -38.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.05 -8.71 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692121930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.134 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds