Wall clock time and date at job start Sun Mar 29 2020 22:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 C 1.52998 * 109.47514 * 119.99946 * 2 1 3 5 5 N 1.46906 * 109.47131 * 69.21641 * 4 2 1 6 6 C 1.46899 * 110.99987 * 45.14521 * 5 4 2 7 7 C 1.50700 * 109.47141 * 66.04697 * 6 5 4 8 8 H 1.08004 * 119.99850 * 0.02562 * 7 6 5 9 9 C 1.37868 * 120.00163 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00219 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99874 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47208 * 90.00137 * 11 9 7 13 13 H 1.48510 * 109.47252 * 209.99844 * 11 9 7 14 14 H 1.48501 * 109.47505 * 329.99709 * 11 9 7 15 15 C 1.46898 * 110.99597 * 281.19359 * 5 4 2 16 16 C 1.53004 * 109.47306 * 291.01884 * 15 5 4 17 17 C 1.54634 * 111.03786 * 288.76197 * 16 15 5 18 18 C 1.51098 * 104.72430 * 217.33271 * 17 16 15 19 19 C 1.30525 * 111.10821 * 16.43696 * 18 17 16 20 20 C 1.51104 * 111.10022 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.47117 * 27.74517 * 1 2 3 22 22 H 1.09004 * 109.47151 * 147.74603 * 1 2 3 23 23 H 1.09005 * 109.47116 * 267.74062 * 1 2 3 24 24 H 1.09009 * 109.47189 * 239.99932 * 2 1 3 25 25 H 1.09001 * 109.46850 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46901 * 299.99920 * 3 2 1 27 27 H 1.08995 * 109.47064 * 59.99955 * 3 2 1 28 28 H 1.09004 * 109.47244 * 309.21896 * 4 2 1 29 29 H 1.09001 * 109.47515 * 189.21580 * 4 2 1 30 30 H 1.08999 * 109.46821 * 186.04860 * 6 5 4 31 31 H 1.09004 * 109.47090 * 306.04782 * 6 5 4 32 32 H 0.97004 * 119.99687 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.47672 * 51.02247 * 15 5 4 34 34 H 1.09003 * 109.47127 * 171.02348 * 15 5 4 35 35 H 1.09003 * 110.91079 * 52.77255 * 16 15 5 36 36 H 1.09001 * 110.38695 * 336.14176 * 17 16 15 37 37 H 1.08999 * 110.38206 * 98.52187 * 17 16 15 38 38 H 1.08006 * 124.44994 * 196.46172 * 18 17 16 39 39 H 1.08001 * 124.45148 * 180.02562 * 19 18 17 40 40 H 1.09002 * 110.38655 * 224.75148 * 20 19 18 41 41 H 1.09007 * 110.38320 * 102.37485 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.7400 -2.1554 1.1435 6 6 2.0774 -2.6668 -0.1916 7 6 3.5691 -2.5968 -0.3941 8 1 4.2031 -2.2113 0.3908 9 6 4.1246 -3.0258 -1.5807 10 7 5.4265 -2.9652 -1.7573 11 14 3.0282 -3.6931 -2.9379 12 1 2.6060 -2.5800 -3.8255 13 1 3.7785 -4.7006 -3.7301 14 1 1.8285 -4.3295 -2.3371 15 6 0.3332 -2.4243 1.4701 16 6 0.0999 -2.1779 2.9621 17 6 0.7724 -3.2763 3.8179 18 6 -0.1871 -3.5138 4.9607 19 6 -1.3660 -3.0206 4.6950 20 6 -1.3891 -2.3713 3.3308 21 1 -0.3633 0.9095 -0.4784 22 1 -0.3634 -0.8691 -0.5485 23 1 -0.3633 -0.0405 1.0269 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.5486 -0.3113 2.1316 29 1 3.1175 -0.5809 1.3353 30 1 1.7472 -3.7020 -0.2783 31 1 1.5792 -2.0618 -0.9491 32 1 5.8172 -3.2667 -2.5924 33 1 -0.3080 -1.7624 0.8879 34 1 0.0967 -3.4613 1.2319 35 1 0.4488 -1.1867 3.2519 36 1 0.9003 -4.1876 3.2338 37 1 1.7338 -2.9280 4.1954 38 1 0.0690 -4.0244 5.8774 39 1 -2.2134 -3.0695 5.3628 40 1 -1.8975 -1.4082 3.3772 41 1 -1.8770 -3.0248 2.6075 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692121930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:07 Heat of formation + Delta-G solvation = 3.195949 kcal Electronic energy + Delta-G solvation = -17851.282903 eV Core-core repulsion = 15344.770716 eV Total energy + Delta-G solvation = -2506.512187 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48778 -38.68988 -35.05576 -34.27677 -31.61647 -29.26674 -28.87872 -28.26296 -26.91806 -24.72007 -22.54698 -21.06485 -20.16754 -19.48144 -18.87904 -17.04344 -16.84810 -16.50537 -16.27246 -15.61560 -15.25551 -14.51864 -14.39472 -13.74963 -13.60726 -13.50054 -13.23748 -13.05431 -12.92412 -12.89733 -12.72595 -12.36203 -12.13874 -12.04897 -11.92046 -11.81007 -11.73367 -11.66329 -11.46090 -11.17298 -11.05879 -10.73755 -9.68542 -8.69721 -8.25493 -6.26573 1.31945 1.34308 1.44524 1.46361 2.34566 3.08041 3.29265 3.86772 3.89100 4.02509 4.07740 4.12638 4.28550 4.47471 4.49980 4.63386 4.69443 4.73849 4.78185 4.82010 4.93577 4.95747 4.97259 5.00030 5.03455 5.07004 5.11346 5.20191 5.24410 5.31376 5.33560 5.48597 5.53579 5.58113 5.65009 5.71110 6.08219 6.12758 6.50363 6.77231 6.80556 7.36524 8.91527 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.007614 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.706183 B = 3676.513448 C = 4244.530074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 C -0.133 4.133 4 C 0.079 3.921 5 N -0.538 5.538 6 C 0.169 3.831 7 C -0.501 4.501 8 H 0.034 0.966 9 C 0.008 3.992 10 N -0.950 5.950 11 Si 0.939 3.061 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.251 1.251 15 C 0.040 3.960 16 C -0.082 4.082 17 C -0.089 4.089 18 C -0.178 4.178 19 C -0.167 4.167 20 C -0.093 4.093 21 H 0.066 0.934 22 H 0.045 0.955 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.016 0.984 31 H 0.003 0.997 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.132 0.868 39 H 0.143 0.857 40 H 0.083 0.917 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 4.285 8.496 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C -0.190 4.190 4 C -0.049 4.049 5 N -0.261 5.261 6 C 0.042 3.958 7 C -0.540 4.540 8 H 0.052 0.948 9 C -0.189 4.189 10 N -0.592 5.592 11 Si 0.763 3.237 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.175 1.175 15 C -0.087 4.087 16 C -0.100 4.100 17 C -0.127 4.127 18 C -0.195 4.195 19 C -0.184 4.184 20 C -0.131 4.131 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.102 0.898 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.920 3.980 8.719 18.583 hybrid contribution 0.178 -0.205 -1.392 1.419 sum -15.742 3.775 7.327 17.769 Atomic orbital electron populations 1.22048 0.94022 1.01327 1.02214 1.21798 0.96885 0.97264 1.00173 1.21708 1.00103 0.95078 1.02153 1.22039 0.99410 0.86888 0.96519 1.62029 1.19946 1.15284 1.28808 1.20019 0.94544 0.94149 0.87103 1.21214 0.92099 1.40517 1.00150 0.94788 1.25774 0.96137 0.96056 1.00918 1.70057 1.12281 1.50009 1.26824 0.85829 0.79631 0.78923 0.79294 1.19215 1.20925 1.17472 1.22625 0.89339 1.00718 0.96032 1.21982 0.95582 0.98878 0.93597 1.21273 0.98063 0.98355 0.94967 1.23472 0.96025 1.01126 0.98925 1.23450 0.98084 0.99502 0.97408 1.21404 0.95357 1.01175 0.95149 0.91514 0.93630 0.91077 0.92689 0.94510 0.92230 0.91216 0.90116 0.94321 0.96643 0.97971 0.92674 0.91582 0.92746 0.90512 0.92385 0.92750 0.85056 0.83941 0.89814 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 7.79 71.98 0.56 -3.19 16 2 C -0.14 -4.85 2.41 -10.80 -0.03 -4.87 16 3 C -0.13 -3.92 8.99 71.98 0.65 -3.28 16 4 C 0.08 2.96 4.49 86.30 0.39 3.35 16 5 N -0.54 -21.85 4.60 -900.76 -4.15 -25.99 16 6 C 0.17 8.08 3.27 85.56 0.28 8.36 16 7 C -0.50 -29.19 9.03 25.60 0.23 -28.95 16 8 H 0.03 2.23 7.41 -2.91 -0.02 2.21 16 9 C 0.01 0.46 5.47 84.65 0.46 0.92 16 10 N -0.95 -60.28 13.96 21.44 0.30 -59.98 16 11 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 15 C 0.04 1.28 3.84 86.30 0.33 1.61 16 16 C -0.08 -2.19 3.12 -9.69 -0.03 -2.22 16 17 C -0.09 -2.57 6.30 30.53 0.19 -2.37 16 18 C -0.18 -4.07 10.77 26.26 0.28 -3.78 16 19 C -0.17 -3.32 10.78 26.26 0.28 -3.04 16 20 C -0.09 -1.95 6.38 30.53 0.19 -1.75 16 21 H 0.07 1.54 7.79 -2.39 -0.02 1.52 16 22 H 0.04 1.29 6.82 -2.38 -0.02 1.27 16 23 H 0.07 1.69 6.52 -2.38 -0.02 1.67 16 24 H 0.05 2.34 5.45 -2.38 -0.01 2.33 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 2.54 5.78 -2.38 -0.01 2.53 16 29 H 0.04 1.70 7.33 -2.39 -0.02 1.69 16 30 H 0.02 0.76 6.95 -2.39 -0.02 0.75 16 31 H 0.00 0.13 4.75 -2.38 -0.01 0.12 16 32 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.07 1.91 3.53 -2.39 -0.01 1.90 16 34 H 0.05 1.81 7.70 -2.39 -0.02 1.80 16 35 H 0.08 2.06 6.30 -2.39 -0.02 2.05 16 36 H 0.06 1.86 7.77 -2.39 -0.02 1.84 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.58 7.89 -2.38 -0.02 1.56 16 Total: -1.00 -65.58 306.51 2.76 -62.82 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.93 Total: 15.77 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 3.80 Total: -39.21 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -3.85 Total: -85.97 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -65.58 2.76 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692121930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.016 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds