Wall clock time and date at job start Sun Mar 29 2020 22:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47390 * 2 1 4 4 H 1.08997 * 109.47279 * 54.78557 * 3 2 1 5 5 C 1.50699 * 109.47208 * 174.79042 * 3 2 1 6 6 H 1.07997 * 120.00111 * 120.00251 * 5 3 2 7 7 C 1.37872 * 119.99841 * 299.99657 * 5 3 2 8 8 N 1.31519 * 120.00001 * 359.72703 * 7 5 3 9 9 Si 1.86803 * 120.00206 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47214 * 89.99963 * 9 7 5 11 11 H 1.48500 * 109.47359 * 210.00306 * 9 7 5 12 12 H 1.48502 * 109.46660 * 330.00170 * 9 7 5 13 13 N 1.46898 * 109.46915 * 294.79153 * 3 2 1 14 14 C 1.46903 * 111.00379 * 153.74968 * 13 3 2 15 15 H 1.09004 * 112.87256 * 21.56429 * 14 13 3 16 16 C 1.53917 * 113.65139 * 250.13889 * 14 13 3 17 17 C 1.53913 * 87.22230 * 220.64430 * 16 14 13 18 18 C 1.53010 * 113.65260 * 152.87476 * 14 13 3 19 19 C 1.53564 * 115.13433 * 22.65612 * 18 14 13 20 20 C 1.55058 * 103.99098 * 206.87066 * 19 18 14 21 21 C 1.54960 * 102.85753 * 37.29569 * 20 19 18 22 22 C 1.53177 * 115.37429 * 256.64722 * 18 14 13 23 23 H 1.09000 * 109.46754 * 184.29295 * 1 2 3 24 24 H 1.08998 * 109.47072 * 304.29457 * 1 2 3 25 25 H 1.08998 * 109.46767 * 64.29323 * 1 2 3 26 26 H 1.09003 * 109.47021 * 239.99586 * 2 1 3 27 27 H 1.08998 * 109.47057 * 120.00082 * 2 1 3 28 28 H 0.96999 * 119.99703 * 180.02562 * 8 7 5 29 29 H 1.00896 * 111.00656 * 29.78992 * 13 3 2 30 30 H 1.09007 * 113.58988 * 335.22988 * 16 14 13 31 31 H 1.08996 * 113.58994 * 106.05428 * 16 14 13 32 32 H 1.09001 * 113.65225 * 270.36950 * 17 16 14 33 33 H 1.09004 * 113.65175 * 139.34833 * 17 16 14 34 34 H 1.09011 * 110.52069 * 325.49730 * 19 18 14 35 35 H 1.08998 * 110.52900 * 88.23706 * 19 18 14 36 36 H 1.09004 * 110.73281 * 278.95868 * 20 19 18 37 37 H 1.08997 * 110.74019 * 155.63416 * 20 19 18 38 38 H 1.09002 * 110.47902 * 203.77076 * 21 20 19 39 39 H 1.08994 * 110.59233 * 81.19780 * 21 20 19 40 40 H 1.09005 * 110.09333 * 248.86257 * 22 18 14 41 41 H 1.08999 * 110.09096 * 10.38857 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6026 1.9826 0.8396 5 6 3.5416 1.4444 0.1290 6 1 4.1495 1.8880 -0.6455 7 6 4.1390 0.8799 1.2359 8 7 3.3984 0.3445 2.1817 9 14 6.0002 0.8828 1.3963 10 1 6.4345 2.1165 2.0993 11 1 6.4321 -0.3073 2.1724 12 1 6.6134 0.8415 0.0444 13 7 1.6558 2.0977 -1.2573 14 6 1.5476 3.5521 -1.0815 15 1 2.1079 3.9177 -0.2209 16 6 0.1019 4.0761 -1.1476 17 6 0.6489 5.2640 -1.9592 18 6 1.8047 4.3463 -2.3638 19 6 1.5905 3.5654 -3.6687 20 6 2.5265 4.2694 -4.6848 21 6 3.7665 4.6216 -3.8248 22 6 3.1769 5.0210 -2.4541 23 1 -0.3633 -1.0248 0.0769 24 1 -0.3633 0.5790 0.8490 25 1 -0.3633 0.4458 -0.9260 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8188 -0.0523 2.9606 29 1 0.7960 1.7121 -1.6180 30 1 -0.5700 3.4323 -1.7153 31 1 -0.3037 4.3609 -0.1767 32 1 0.9567 6.1094 -1.3438 33 1 0.0097 5.5556 -2.7926 34 1 1.8799 2.5221 -3.5416 35 1 0.5520 3.6382 -3.9916 36 1 2.0600 5.1729 -5.0774 37 1 2.7980 3.5911 -5.4936 38 1 4.3104 5.4578 -4.2642 39 1 4.4197 3.7553 -3.7211 40 1 3.0663 6.1038 -2.3951 41 1 3.8220 4.6665 -1.6502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694403066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:20 Heat of formation + Delta-G solvation = -2.176316 kcal Electronic energy + Delta-G solvation = -18042.044506 eV Core-core repulsion = 15535.299360 eV Total energy + Delta-G solvation = -2506.745146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85765 -35.86940 -34.32028 -31.86750 -30.14305 -28.35551 -26.49338 -26.36464 -23.66644 -22.30943 -21.36993 -20.23963 -19.40942 -17.58158 -16.16867 -15.40127 -15.23462 -14.81224 -14.30362 -13.70526 -13.24505 -12.85291 -12.76080 -12.72152 -12.45536 -11.87382 -11.62226 -11.35109 -11.22836 -10.86745 -10.79009 -10.69834 -10.61890 -10.59213 -10.17935 -10.10248 -9.94454 -9.88595 -9.70518 -9.57792 -9.12241 -8.96896 -8.30579 -7.07879 -5.92058 -3.95555 3.34338 3.41075 3.45857 4.48500 4.88050 4.96862 4.99884 5.24795 5.35092 5.35993 5.47251 5.60231 5.81496 5.90714 6.03739 6.04797 6.07555 6.12730 6.17293 6.19523 6.21927 6.23980 6.30211 6.31800 6.44056 6.50749 6.62143 6.77357 6.83622 6.87159 6.91270 7.01474 7.13786 7.24287 7.58651 7.82929 7.99144 8.41120 8.46442 8.84669 9.13579 9.69399 11.13201 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.008785 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.709422 B = 3186.466538 C = 3956.777095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.671 5.671 14 C 0.096 3.904 15 H 0.094 0.906 16 C -0.172 4.172 17 C -0.130 4.130 18 C -0.073 4.073 19 C -0.096 4.096 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.108 4.108 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.258 0.742 29 H 0.318 0.682 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 6.966 -8.761 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.300 5.300 14 C -0.016 4.016 15 H 0.112 0.888 16 C -0.212 4.212 17 C -0.168 4.168 18 C -0.074 4.074 19 C -0.134 4.134 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.145 4.145 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.137 0.863 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.984 6.865 -8.806 11.855 hybrid contribution 0.131 0.080 0.754 0.769 sum -3.853 6.945 -8.052 11.310 Atomic orbital electron populations 1.21873 0.99685 0.99547 0.99537 1.21775 0.91148 1.00610 1.02956 1.19170 0.95261 0.89793 0.84631 0.98124 1.21232 0.91329 1.35877 1.04204 0.92074 1.24956 0.97901 0.95830 0.95940 1.69879 1.34579 1.39826 1.09515 0.86594 0.86127 0.77265 0.77992 1.20977 1.21464 1.19941 1.60529 1.35901 1.01416 1.32189 1.22828 0.92879 0.89643 0.96280 0.88834 1.23690 0.99196 0.98620 0.99648 1.22806 0.98064 0.96499 0.99438 1.22107 0.93578 0.95477 0.96211 1.22025 0.97848 1.01021 0.92484 1.22493 0.96504 0.99436 0.97574 1.22333 0.97320 1.00542 0.95623 1.22000 0.96265 0.98689 0.97555 0.94518 0.93928 0.94668 0.94152 0.88387 0.93207 0.86320 0.90796 0.92387 0.90765 0.92171 0.89110 0.93075 0.92597 0.92351 0.92898 0.91494 0.92855 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.67 37.16 0.36 -2.52 16 2 C -0.13 -2.96 5.35 -26.73 -0.14 -3.11 16 3 C 0.22 5.36 1.87 -68.87 -0.13 5.23 16 4 H 0.00 0.03 7.79 -51.93 -0.40 -0.37 16 5 C -0.49 -13.32 8.73 -34.44 -0.30 -13.62 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.58 11.31 55.43 0.63 -24.95 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -13.80 4.93 -100.45 -0.50 -14.29 16 14 C 0.10 1.77 3.38 -67.23 -0.23 1.54 16 15 H 0.09 1.98 7.76 -51.93 -0.40 1.57 16 16 C -0.17 -2.69 7.52 -25.78 -0.19 -2.88 16 17 C -0.13 -1.83 7.14 -26.24 -0.19 -2.02 16 18 C -0.07 -1.14 1.11 -154.11 -0.17 -1.31 16 19 C -0.10 -1.44 5.81 -25.35 -0.15 -1.58 16 20 C -0.12 -1.63 6.91 -24.61 -0.17 -1.80 16 21 C -0.12 -1.72 6.85 -24.93 -0.17 -1.89 16 22 C -0.11 -1.67 6.33 -25.87 -0.16 -1.84 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.61 6.58 -51.93 -0.34 0.27 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.10 2.60 5.96 -51.93 -0.31 2.29 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.32 6.08 5.98 -39.29 -0.24 5.84 16 30 H 0.07 1.11 7.82 -51.92 -0.41 0.70 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 33 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 34 H 0.09 1.54 6.97 -51.92 -0.36 1.18 16 35 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.07 1.24 7.90 -51.93 -0.41 0.83 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -27.26 313.00 -9.37 -36.63 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.46 Total: 5.73 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.74 Total: -24.42 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.13 Total: -39.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.26 -9.37 -36.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694403066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.450 kcal (2) G-P(sol) polarization free energy of solvation -27.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds