Wall clock time and date at job start Sun Mar 29 2020 22:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47390 * 2 1 4 4 H 1.08997 * 109.47279 * 54.78557 * 3 2 1 5 5 C 1.50699 * 109.47208 * 174.79042 * 3 2 1 6 6 H 1.07997 * 120.00111 * 120.00251 * 5 3 2 7 7 C 1.37872 * 119.99841 * 299.99657 * 5 3 2 8 8 N 1.31519 * 120.00001 * 359.72703 * 7 5 3 9 9 Si 1.86803 * 120.00206 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47214 * 89.99963 * 9 7 5 11 11 H 1.48500 * 109.47359 * 210.00306 * 9 7 5 12 12 H 1.48502 * 109.46660 * 330.00170 * 9 7 5 13 13 N 1.46898 * 109.46915 * 294.79153 * 3 2 1 14 14 C 1.46903 * 111.00379 * 153.74968 * 13 3 2 15 15 H 1.09004 * 112.87256 * 21.56429 * 14 13 3 16 16 C 1.53917 * 113.65139 * 250.13889 * 14 13 3 17 17 C 1.53913 * 87.22230 * 220.64430 * 16 14 13 18 18 C 1.53010 * 113.65260 * 152.87476 * 14 13 3 19 19 C 1.53564 * 115.13433 * 22.65612 * 18 14 13 20 20 C 1.55058 * 103.99098 * 206.87066 * 19 18 14 21 21 C 1.54960 * 102.85753 * 37.29569 * 20 19 18 22 22 C 1.53177 * 115.37429 * 256.64722 * 18 14 13 23 23 H 1.09000 * 109.46754 * 184.29295 * 1 2 3 24 24 H 1.08998 * 109.47072 * 304.29457 * 1 2 3 25 25 H 1.08998 * 109.46767 * 64.29323 * 1 2 3 26 26 H 1.09003 * 109.47021 * 239.99586 * 2 1 3 27 27 H 1.08998 * 109.47057 * 120.00082 * 2 1 3 28 28 H 0.96999 * 119.99703 * 180.02562 * 8 7 5 29 29 H 1.00896 * 111.00656 * 29.78992 * 13 3 2 30 30 H 1.09007 * 113.58988 * 335.22988 * 16 14 13 31 31 H 1.08996 * 113.58994 * 106.05428 * 16 14 13 32 32 H 1.09001 * 113.65225 * 270.36950 * 17 16 14 33 33 H 1.09004 * 113.65175 * 139.34833 * 17 16 14 34 34 H 1.09011 * 110.52069 * 325.49730 * 19 18 14 35 35 H 1.08998 * 110.52900 * 88.23706 * 19 18 14 36 36 H 1.09004 * 110.73281 * 278.95868 * 20 19 18 37 37 H 1.08997 * 110.74019 * 155.63416 * 20 19 18 38 38 H 1.09002 * 110.47902 * 203.77076 * 21 20 19 39 39 H 1.08994 * 110.59233 * 81.19780 * 21 20 19 40 40 H 1.09005 * 110.09333 * 248.86257 * 22 18 14 41 41 H 1.08999 * 110.09096 * 10.38857 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6026 1.9826 0.8396 5 6 3.5416 1.4444 0.1290 6 1 4.1495 1.8880 -0.6455 7 6 4.1390 0.8799 1.2359 8 7 3.3984 0.3445 2.1817 9 14 6.0002 0.8828 1.3963 10 1 6.4345 2.1165 2.0993 11 1 6.4321 -0.3073 2.1724 12 1 6.6134 0.8415 0.0444 13 7 1.6558 2.0977 -1.2573 14 6 1.5476 3.5521 -1.0815 15 1 2.1079 3.9177 -0.2209 16 6 0.1019 4.0761 -1.1476 17 6 0.6489 5.2640 -1.9592 18 6 1.8047 4.3463 -2.3638 19 6 1.5905 3.5654 -3.6687 20 6 2.5265 4.2694 -4.6848 21 6 3.7665 4.6216 -3.8248 22 6 3.1769 5.0210 -2.4541 23 1 -0.3633 -1.0248 0.0769 24 1 -0.3633 0.5790 0.8490 25 1 -0.3633 0.4458 -0.9260 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8188 -0.0523 2.9606 29 1 0.7960 1.7121 -1.6180 30 1 -0.5700 3.4323 -1.7153 31 1 -0.3037 4.3609 -0.1767 32 1 0.9567 6.1094 -1.3438 33 1 0.0097 5.5556 -2.7926 34 1 1.8799 2.5221 -3.5416 35 1 0.5520 3.6382 -3.9916 36 1 2.0600 5.1729 -5.0774 37 1 2.7980 3.5911 -5.4936 38 1 4.3104 5.4578 -4.2642 39 1 4.4197 3.7553 -3.7211 40 1 3.0663 6.1038 -2.3951 41 1 3.8220 4.6665 -1.6502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694403066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:20 Heat of formation + Delta-G solvation = -16.220054 kcal Electronic energy + Delta-G solvation = -18042.653488 eV Core-core repulsion = 15535.299360 eV Total energy + Delta-G solvation = -2507.354128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17046 -37.58847 -35.69864 -33.90408 -31.78639 -29.55248 -28.44939 -27.56243 -25.34366 -23.96313 -22.63472 -21.62041 -21.10197 -18.90563 -18.29757 -16.87417 -16.63553 -16.44001 -15.82315 -15.43615 -14.78159 -14.48258 -14.10735 -13.99590 -13.91709 -13.50818 -13.13867 -13.09032 -12.78552 -12.60479 -12.49058 -12.30538 -11.92767 -11.85642 -11.74737 -11.72611 -11.48431 -11.30299 -11.19400 -11.06911 -10.80283 -10.63163 -10.40967 -8.80102 -8.05101 -6.16592 1.38125 1.39357 1.50025 2.43270 3.19158 3.58294 3.72891 3.75494 3.92681 4.09297 4.24934 4.35481 4.48512 4.53658 4.58223 4.70575 4.72082 4.79985 4.86303 4.90513 4.95839 4.98799 5.06515 5.09720 5.12772 5.19222 5.25446 5.31212 5.36697 5.38833 5.54109 5.58866 5.63455 5.68276 5.76713 5.80490 5.94666 6.41223 6.61806 6.99423 7.10518 7.52702 8.97369 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020958 B = 0.008785 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.709422 B = 3186.466538 C = 3956.777095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.228 3.772 4 H -0.036 1.036 5 C -0.503 4.503 6 H 0.045 0.955 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.668 5.668 14 C 0.076 3.924 15 H 0.054 0.946 16 C -0.163 4.163 17 C -0.114 4.114 18 C -0.070 4.070 19 C -0.096 4.096 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.111 4.111 23 H 0.056 0.944 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 8.033 -10.684 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.120 3.880 4 H -0.018 1.018 5 C -0.542 4.542 6 H 0.064 0.936 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.298 5.298 14 C -0.035 4.035 15 H 0.073 0.927 16 C -0.202 4.202 17 C -0.151 4.151 18 C -0.071 4.071 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.148 4.148 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.910 7.943 -10.740 14.232 hybrid contribution 0.432 -0.237 1.376 1.461 sum -4.479 7.706 -9.365 12.928 Atomic orbital electron populations 1.21730 0.96254 1.01021 1.00440 1.21597 0.94237 0.99196 1.01019 1.18892 0.93644 0.90424 0.85089 1.01830 1.21461 0.92990 1.35758 1.03963 0.93622 1.25649 1.01962 0.95610 0.95714 1.70006 1.36040 1.40286 1.09810 0.85676 0.81323 0.77419 0.77932 1.20554 1.20771 1.19729 1.60459 1.36671 1.02681 1.29982 1.22895 0.95281 0.88466 0.96894 0.92726 1.23624 0.97057 0.99355 1.00200 1.22740 0.96938 0.95669 0.99787 1.22128 0.94489 0.95385 0.95125 1.21996 0.99410 0.99505 0.92399 1.22474 0.95281 1.00359 0.97041 1.22331 0.97845 1.00444 0.95236 1.22018 0.95760 0.99798 0.97262 0.92498 0.94643 0.92316 0.94595 0.91666 0.93206 0.85265 0.89437 0.92682 0.90207 0.89494 0.91653 0.91124 0.90342 0.91445 0.90769 0.93744 0.90882 0.94674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.67 71.98 0.70 -4.49 16 2 C -0.12 -5.83 5.35 30.59 0.16 -5.67 16 3 C 0.23 11.60 1.87 44.17 0.08 11.68 16 4 H -0.04 -2.05 7.79 -2.39 -0.02 -2.07 16 5 C -0.50 -28.64 8.73 25.60 0.22 -28.41 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -54.09 11.31 21.45 0.24 -53.85 16 9 Si 0.95 45.41 29.54 68.60 2.03 47.43 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.67 -27.99 4.93 -471.71 -2.33 -30.32 16 14 C 0.08 2.85 3.38 45.23 0.15 3.00 16 15 H 0.05 2.46 7.76 -2.38 -0.02 2.44 16 16 C -0.16 -4.84 7.52 31.21 0.23 -4.60 16 17 C -0.11 -2.87 7.14 30.91 0.22 -2.65 16 18 C -0.07 -2.12 1.11 -51.92 -0.06 -2.18 16 19 C -0.10 -2.63 5.81 31.49 0.18 -2.45 16 20 C -0.11 -2.69 6.91 31.97 0.22 -2.47 16 21 C -0.12 -3.28 6.85 31.76 0.22 -3.06 16 22 C -0.11 -3.38 6.33 31.15 0.20 -3.18 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.93 6.58 -2.39 -0.02 1.91 16 26 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 3.57 5.96 -2.39 -0.01 3.55 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.33 12.34 5.98 -89.70 -0.54 11.80 16 30 H 0.09 2.37 7.82 -2.38 -0.02 2.35 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.95 8.11 -2.39 -0.02 1.93 16 33 H 0.09 1.80 8.03 -2.39 -0.02 1.79 16 34 H 0.06 2.15 6.97 -2.38 -0.02 2.13 16 35 H 0.07 1.67 7.88 -2.39 -0.02 1.65 16 36 H 0.08 1.54 8.14 -2.38 -0.02 1.53 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.91 7.91 -2.38 -0.02 1.89 16 41 H 0.03 1.29 7.90 -2.39 -0.02 1.27 16 Total: -1.00 -60.97 313.00 3.36 -57.61 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.44 Total: 22.68 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 2.98 Total: -43.56 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -2.08 Total: -84.17 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -60.97 3.36 -57.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694403066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.392 kcal (2) G-P(sol) polarization free energy of solvation -60.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds