Wall clock time and date at job start Sun Mar 29 2020 22:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47400 * 2 1 4 4 H 1.08998 * 109.46985 * 305.63792 * 3 2 1 5 5 C 1.50700 * 109.47208 * 185.63771 * 3 2 1 6 6 H 1.08004 * 119.99741 * 240.00329 * 5 3 2 7 7 C 1.37868 * 120.00131 * 59.99835 * 5 3 2 8 8 N 1.31509 * 120.00289 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99936 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46877 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46803 * 120.00204 * 9 7 5 12 12 H 1.48498 * 109.46712 * 240.00076 * 9 7 5 13 13 N 1.46899 * 109.46738 * 65.63596 * 3 2 1 14 14 C 1.46910 * 110.99698 * 206.12049 * 13 3 2 15 15 H 1.08991 * 112.87939 * 29.19276 * 14 13 3 16 16 C 1.53927 * 113.72937 * 257.80778 * 14 13 3 17 17 C 1.53921 * 87.22270 * 220.63627 * 16 14 13 18 18 C 1.53015 * 113.64927 * 160.51040 * 14 13 3 19 19 C 1.53563 * 115.13333 * 22.74274 * 18 14 13 20 20 C 1.55054 * 103.98645 * 206.87499 * 19 18 14 21 21 C 1.54946 * 102.86217 * 37.29377 * 20 19 18 22 22 C 1.53167 * 115.37069 * 256.73468 * 18 14 13 23 23 H 1.09005 * 109.47157 * 54.15040 * 1 2 3 24 24 H 1.08993 * 109.47400 * 174.14889 * 1 2 3 25 25 H 1.09009 * 109.46721 * 294.15504 * 1 2 3 26 26 H 1.09006 * 109.46805 * 240.00516 * 2 1 3 27 27 H 1.08998 * 109.47329 * 120.00438 * 2 1 3 28 28 H 0.96996 * 120.00489 * 179.97438 * 8 7 5 29 29 H 1.00899 * 111.00283 * 330.06796 * 13 3 2 30 30 H 1.08993 * 113.59094 * 335.22582 * 16 14 13 31 31 H 1.09000 * 113.58603 * 106.04877 * 16 14 13 32 32 H 1.08993 * 113.64846 * 270.37574 * 17 16 14 33 33 H 1.08998 * 113.65012 * 139.35330 * 17 16 14 34 34 H 1.09000 * 110.52394 * 325.49712 * 19 18 14 35 35 H 1.09001 * 110.52808 * 88.24321 * 19 18 14 36 36 H 1.09007 * 110.72949 * 278.95134 * 20 19 18 37 37 H 1.08996 * 110.73683 * 155.64154 * 20 19 18 38 38 H 1.09008 * 110.48250 * 203.76728 * 21 20 19 39 39 H 1.08997 * 110.59243 * 81.19788 * 21 20 19 40 40 H 1.09007 * 110.09320 * 248.85846 * 22 18 14 41 41 H 1.08998 * 110.09587 * 10.39141 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 -0.8352 5 6 3.5406 1.4447 -0.1396 6 1 4.1540 1.8864 0.6319 7 6 4.1303 0.8829 -1.2520 8 7 3.3834 0.3455 -2.1915 9 14 5.9904 0.8851 -1.4246 10 1 6.5966 1.5448 -0.2403 11 1 6.4805 -0.5137 -1.5164 12 1 6.3725 1.6253 -2.6539 13 7 1.6646 2.0945 1.2617 14 6 1.5582 3.5497 1.0908 15 1 1.2697 3.8378 0.0800 16 6 2.7714 4.3273 1.6319 17 6 1.7710 5.3654 2.1711 18 6 0.7367 4.2376 2.1833 19 6 0.6322 3.4636 3.5055 20 6 -0.7074 3.9477 4.1181 21 6 -1.6211 4.0967 2.8756 22 6 -0.6829 4.6456 1.7781 23 1 -0.3634 0.6019 -0.8330 24 1 -0.3634 -1.0222 -0.1048 25 1 -0.3633 0.4206 0.9378 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.7983 -0.0494 -2.9743 29 1 0.8061 1.7096 1.6262 30 1 3.3151 3.7980 2.4143 31 1 3.4244 4.7157 0.8503 32 1 1.5419 6.1611 1.4624 33 1 2.0216 5.7396 3.1637 34 1 0.6011 2.3902 3.3185 35 1 1.4654 3.7142 4.1620 36 1 -0.5781 4.9070 4.6194 37 1 -1.1089 3.2030 4.8053 38 1 -2.4266 4.8030 3.0770 39 1 -2.0280 3.1295 2.5808 40 1 -0.7605 5.7317 1.7279 41 1 -0.9375 4.2074 0.8131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694403069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:24 Heat of formation + Delta-G solvation = -0.583473 kcal Electronic energy + Delta-G solvation = -18015.546315 eV Core-core repulsion = 15508.870239 eV Total energy + Delta-G solvation = -2506.676075 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93296 -35.82257 -34.38521 -31.89414 -30.15400 -28.55744 -26.75650 -26.20518 -23.66666 -22.29819 -21.26278 -20.39527 -19.35165 -17.54637 -16.23083 -15.74263 -15.22757 -14.83212 -14.30358 -13.78074 -13.39826 -12.98138 -12.80587 -12.72722 -12.13694 -12.05981 -11.74784 -11.22074 -11.13038 -10.92941 -10.87378 -10.79528 -10.63907 -10.55374 -10.34328 -10.23042 -10.03463 -9.89693 -9.64099 -9.44115 -9.13725 -8.94163 -8.28233 -7.14302 -5.90507 -3.93343 3.34488 3.42417 3.47826 4.49963 4.73875 4.80336 4.86129 5.31718 5.33964 5.39949 5.43419 5.63954 5.65147 5.70411 5.86061 5.90770 6.00034 6.06757 6.12528 6.16945 6.18690 6.20652 6.25858 6.31474 6.44351 6.48517 6.55154 6.63885 6.72088 6.86836 6.97048 7.02209 7.14498 7.25235 7.59477 7.83908 8.00427 8.43472 8.47715 8.85353 9.15725 9.71341 11.15127 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.007481 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.031165 B = 3741.710392 C = 4345.505878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.672 5.672 14 C 0.090 3.910 15 H 0.058 0.942 16 C -0.117 4.117 17 C -0.134 4.134 18 C -0.088 4.088 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.113 4.113 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.098 0.902 27 H 0.040 0.960 28 H 0.257 0.743 29 H 0.317 0.683 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 6.874 8.676 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.522 4.522 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.304 5.304 14 C -0.021 4.021 15 H 0.075 0.925 16 C -0.155 4.155 17 C -0.171 4.171 18 C -0.088 4.088 19 C -0.131 4.131 20 C -0.163 4.163 21 C -0.161 4.161 22 C -0.151 4.151 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.056 6.792 8.726 13.117 hybrid contribution 0.181 0.030 -0.844 0.863 sum -6.875 6.821 7.882 12.487 Atomic orbital electron populations 1.21874 0.99704 0.99594 0.99460 1.21787 0.91134 1.00652 1.02977 1.19224 0.95478 0.89819 0.84455 0.98233 1.21265 0.91344 1.35630 1.03999 0.91960 1.24960 0.97887 0.95901 0.96001 1.69880 1.34446 1.40022 1.09613 0.86536 0.86152 0.77500 0.77788 1.19816 1.21252 1.21358 1.60916 1.36010 1.01457 1.32023 1.22743 0.94882 0.89422 0.95094 0.92451 1.22907 0.96482 0.95815 1.00325 1.22864 0.97612 0.96138 1.00531 1.22241 0.93149 0.96821 0.96636 1.22003 0.96250 1.00579 0.94304 1.22543 0.96192 1.00534 0.97009 1.22372 0.97467 1.00640 0.95620 1.22097 0.94414 1.00129 0.98432 0.93973 0.94483 0.94701 0.88333 0.94152 0.93293 0.86306 0.89891 0.92286 0.90988 0.92046 0.90197 0.91838 0.92102 0.92088 0.92447 0.91892 0.92146 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.64 37.16 0.36 -2.55 16 2 C -0.13 -3.01 5.35 -26.73 -0.14 -3.15 16 3 C 0.22 5.41 2.02 -68.87 -0.14 5.27 16 4 H 0.00 0.00 7.47 -51.93 -0.39 -0.38 16 5 C -0.48 -13.34 8.73 -34.44 -0.30 -13.64 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.05 1.45 5.29 -17.83 -0.09 1.36 16 8 N -0.90 -25.84 11.29 55.43 0.63 -25.21 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 N -0.67 -14.03 5.65 -100.44 -0.57 -14.60 16 14 C 0.09 1.68 3.40 -67.22 -0.23 1.45 16 15 H 0.06 1.19 7.49 -51.93 -0.39 0.80 16 16 C -0.12 -2.09 7.71 -25.77 -0.20 -2.29 16 17 C -0.13 -1.94 7.14 -26.24 -0.19 -2.13 16 18 C -0.09 -1.31 1.03 -154.11 -0.16 -1.47 16 19 C -0.09 -1.32 5.76 -25.35 -0.15 -1.46 16 20 C -0.13 -1.47 6.91 -24.62 -0.17 -1.64 16 21 C -0.12 -1.46 6.84 -24.93 -0.17 -1.63 16 22 C -0.11 -1.52 6.33 -25.88 -0.16 -1.68 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.61 6.66 -51.92 -0.35 0.26 16 26 H 0.10 2.63 5.94 -51.93 -0.31 2.33 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.32 6.14 4.93 -39.29 -0.19 5.95 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.99 8.11 -51.93 -0.42 0.56 16 33 H 0.06 0.81 8.03 -51.93 -0.42 0.40 16 34 H 0.08 1.22 6.11 -51.93 -0.32 0.91 16 35 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.75 7.91 -51.93 -0.41 0.34 16 41 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -27.76 311.80 -9.37 -37.13 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.36 Total: 4.82 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -1.74 Total: -23.56 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.06 Total: -39.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.76 -9.37 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694403069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.547 kcal (2) G-P(sol) polarization free energy of solvation -27.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds