Wall clock time and date at job start Sun Mar 29 2020 22:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47400 * 2 1 4 4 H 1.08998 * 109.46985 * 305.63792 * 3 2 1 5 5 C 1.50700 * 109.47208 * 185.63771 * 3 2 1 6 6 H 1.08004 * 119.99741 * 240.00329 * 5 3 2 7 7 C 1.37868 * 120.00131 * 59.99835 * 5 3 2 8 8 N 1.31509 * 120.00289 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99936 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46877 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46803 * 120.00204 * 9 7 5 12 12 H 1.48498 * 109.46712 * 240.00076 * 9 7 5 13 13 N 1.46899 * 109.46738 * 65.63596 * 3 2 1 14 14 C 1.46910 * 110.99698 * 206.12049 * 13 3 2 15 15 H 1.08991 * 112.87939 * 29.19276 * 14 13 3 16 16 C 1.53927 * 113.72937 * 257.80778 * 14 13 3 17 17 C 1.53921 * 87.22270 * 220.63627 * 16 14 13 18 18 C 1.53015 * 113.64927 * 160.51040 * 14 13 3 19 19 C 1.53563 * 115.13333 * 22.74274 * 18 14 13 20 20 C 1.55054 * 103.98645 * 206.87499 * 19 18 14 21 21 C 1.54946 * 102.86217 * 37.29377 * 20 19 18 22 22 C 1.53167 * 115.37069 * 256.73468 * 18 14 13 23 23 H 1.09005 * 109.47157 * 54.15040 * 1 2 3 24 24 H 1.08993 * 109.47400 * 174.14889 * 1 2 3 25 25 H 1.09009 * 109.46721 * 294.15504 * 1 2 3 26 26 H 1.09006 * 109.46805 * 240.00516 * 2 1 3 27 27 H 1.08998 * 109.47329 * 120.00438 * 2 1 3 28 28 H 0.96996 * 120.00489 * 179.97438 * 8 7 5 29 29 H 1.00899 * 111.00283 * 330.06796 * 13 3 2 30 30 H 1.08993 * 113.59094 * 335.22582 * 16 14 13 31 31 H 1.09000 * 113.58603 * 106.04877 * 16 14 13 32 32 H 1.08993 * 113.64846 * 270.37574 * 17 16 14 33 33 H 1.08998 * 113.65012 * 139.35330 * 17 16 14 34 34 H 1.09000 * 110.52394 * 325.49712 * 19 18 14 35 35 H 1.09001 * 110.52808 * 88.24321 * 19 18 14 36 36 H 1.09007 * 110.72949 * 278.95134 * 20 19 18 37 37 H 1.08996 * 110.73683 * 155.64154 * 20 19 18 38 38 H 1.09008 * 110.48250 * 203.76728 * 21 20 19 39 39 H 1.08997 * 110.59243 * 81.19788 * 21 20 19 40 40 H 1.09007 * 110.09320 * 248.85846 * 22 18 14 41 41 H 1.08998 * 110.09587 * 10.39141 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5967 1.9846 -0.8352 5 6 3.5406 1.4447 -0.1396 6 1 4.1540 1.8864 0.6319 7 6 4.1303 0.8829 -1.2520 8 7 3.3834 0.3455 -2.1915 9 14 5.9904 0.8851 -1.4246 10 1 6.5966 1.5448 -0.2403 11 1 6.4805 -0.5137 -1.5164 12 1 6.3725 1.6253 -2.6539 13 7 1.6646 2.0945 1.2617 14 6 1.5582 3.5497 1.0908 15 1 1.2697 3.8378 0.0800 16 6 2.7714 4.3273 1.6319 17 6 1.7710 5.3654 2.1711 18 6 0.7367 4.2376 2.1833 19 6 0.6322 3.4636 3.5055 20 6 -0.7074 3.9477 4.1181 21 6 -1.6211 4.0967 2.8756 22 6 -0.6829 4.6456 1.7781 23 1 -0.3634 0.6019 -0.8330 24 1 -0.3634 -1.0222 -0.1048 25 1 -0.3633 0.4206 0.9378 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.7983 -0.0494 -2.9743 29 1 0.8061 1.7096 1.6262 30 1 3.3151 3.7980 2.4143 31 1 3.4244 4.7157 0.8503 32 1 1.5419 6.1611 1.4624 33 1 2.0216 5.7396 3.1637 34 1 0.6011 2.3902 3.3185 35 1 1.4654 3.7142 4.1620 36 1 -0.5781 4.9070 4.6194 37 1 -1.1089 3.2030 4.8053 38 1 -2.4266 4.8030 3.0770 39 1 -2.0280 3.1295 2.5808 40 1 -0.7605 5.7317 1.7279 41 1 -0.9375 4.2074 0.8131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694403069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:24 Heat of formation + Delta-G solvation = -15.245586 kcal Electronic energy + Delta-G solvation = -18016.182112 eV Core-core repulsion = 15508.870239 eV Total energy + Delta-G solvation = -2507.311872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.22926 -37.55245 -35.68379 -33.96072 -31.83427 -29.60848 -28.58175 -27.52561 -25.36464 -23.99076 -22.51720 -21.69484 -21.02538 -18.86189 -18.31230 -17.10443 -16.77503 -16.39695 -15.84355 -15.42707 -14.85331 -14.52255 -14.18516 -14.11665 -13.64550 -13.47178 -13.37496 -13.06545 -12.78206 -12.51817 -12.45808 -12.12425 -11.97732 -11.89879 -11.79161 -11.66751 -11.55386 -11.40412 -11.28594 -10.95003 -10.81772 -10.60285 -10.40066 -8.94561 -8.04962 -6.15734 1.38393 1.40436 1.52333 2.44179 3.19663 3.51356 3.63347 3.73204 3.98349 4.13069 4.20925 4.37070 4.41731 4.49444 4.55999 4.62779 4.69821 4.74850 4.82227 4.86059 4.95117 4.99966 5.06465 5.09167 5.16995 5.20059 5.24786 5.29291 5.36631 5.38743 5.45336 5.55106 5.57893 5.67979 5.70263 5.80222 5.92667 6.41049 6.60819 6.99753 7.06370 7.53246 8.98576 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.007481 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.031165 B = 3741.710392 C = 4345.505878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.226 3.774 4 H -0.038 1.038 5 C -0.499 4.499 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.667 5.667 14 C 0.073 3.927 15 H 0.031 0.969 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.076 4.076 19 C -0.096 4.096 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.114 4.114 23 H 0.033 0.967 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 7.776 10.454 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.117 3.883 4 H -0.021 1.021 5 C -0.538 4.538 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.564 5.564 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.299 5.299 14 C -0.037 4.037 15 H 0.049 0.951 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.077 4.077 19 C -0.134 4.134 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.151 4.151 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.949 7.699 10.517 15.267 hybrid contribution 0.474 -0.246 -1.419 1.516 sum -7.475 7.453 9.098 13.936 Atomic orbital electron populations 1.21729 0.96376 1.01021 1.00309 1.21613 0.94142 0.99232 1.01129 1.18974 0.94027 0.90457 0.84829 1.02083 1.21500 0.92844 1.35608 1.03879 0.93172 1.25680 1.02075 0.95642 0.95761 1.70011 1.36015 1.40465 1.09935 0.85585 0.81157 0.77646 0.77712 1.19542 1.20596 1.20934 1.60833 1.36644 1.02740 1.29698 1.22858 0.97238 0.88272 0.95376 0.95104 1.22900 0.96476 0.97138 0.99682 1.22793 0.95350 0.95464 1.01696 1.22175 0.93927 0.96084 0.95480 1.22012 0.98071 0.99479 0.93822 1.22510 0.94271 1.01562 0.97003 1.22372 0.97636 1.00934 0.94843 1.22100 0.93595 1.01103 0.98338 0.94787 0.92384 0.92484 0.91543 0.94468 0.93249 0.85345 0.90859 0.94083 0.89904 0.89820 0.91786 0.91713 0.90640 0.90786 0.90363 0.92276 0.90598 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.64 71.98 0.69 -4.59 16 2 C -0.12 -5.92 5.35 30.59 0.16 -5.76 16 3 C 0.23 11.62 2.02 44.17 0.09 11.71 16 4 H -0.04 -2.23 7.47 -2.39 -0.02 -2.25 16 5 C -0.50 -28.45 8.73 25.60 0.22 -28.23 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.33 5.29 84.65 0.45 0.77 16 8 N -0.92 -54.51 11.29 21.44 0.24 -54.27 16 9 Si 0.95 45.40 29.54 68.60 2.03 47.42 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.67 -28.44 5.65 -471.67 -2.66 -31.10 16 14 C 0.07 2.81 3.40 45.23 0.15 2.96 16 15 H 0.03 1.35 7.49 -2.39 -0.02 1.33 16 16 C -0.12 -4.46 7.71 31.21 0.24 -4.22 16 17 C -0.12 -3.14 7.14 30.92 0.22 -2.92 16 18 C -0.08 -2.17 1.03 -51.92 -0.05 -2.22 16 19 C -0.10 -2.49 5.76 31.49 0.18 -2.31 16 20 C -0.12 -2.30 6.91 31.96 0.22 -2.08 16 21 C -0.12 -2.46 6.84 31.76 0.22 -2.25 16 22 C -0.11 -2.82 6.33 31.15 0.20 -2.62 16 23 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.06 1.93 6.66 -2.38 -0.02 1.91 16 26 H 0.07 3.66 5.94 -2.38 -0.01 3.65 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.33 12.62 4.93 -89.69 -0.44 12.18 16 30 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 2.09 8.11 -2.39 -0.02 2.07 16 33 H 0.08 1.95 8.03 -2.39 -0.02 1.93 16 34 H 0.06 1.87 6.11 -2.39 -0.01 1.85 16 35 H 0.06 1.66 7.88 -2.39 -0.02 1.64 16 36 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.66 7.91 -2.38 -0.02 1.64 16 41 H 0.04 1.27 7.90 -2.39 -0.02 1.25 16 Total: -1.00 -61.35 311.80 3.14 -58.21 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.53 Total: 21.48 kcal Atomic # 6 Polarization: -44.75 SS G_CDS: 3.00 Total: -41.75 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.42 Total: -85.37 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -61.35 3.14 -58.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694403069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.969 kcal (2) G-P(sol) polarization free energy of solvation -61.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds