Wall clock time and date at job start Sun Mar 29 2020 22:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.08996 * 109.47228 * 304.97341 * 3 2 1 5 5 C 1.50703 * 109.46997 * 184.97331 * 3 2 1 6 6 H 1.08000 * 119.99986 * 276.25959 * 5 3 2 7 7 C 1.37873 * 119.99632 * 96.25762 * 5 3 2 8 8 N 1.31519 * 119.99585 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00444 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46846 * 269.99643 * 9 7 5 11 11 H 1.48500 * 109.47049 * 29.99210 * 9 7 5 12 12 H 1.48499 * 109.47443 * 149.99672 * 9 7 5 13 13 N 1.46101 * 109.46968 * 64.97774 * 3 2 1 14 14 C 1.46120 * 113.01869 * 278.93825 * 13 3 2 15 15 C 1.52106 * 111.32130 * 292.26304 * 14 13 3 16 16 C 1.52093 * 112.80334 * 307.70702 * 15 14 13 17 17 C 1.52081 * 112.88889 * 44.41545 * 16 15 14 18 18 C 1.46123 * 113.02438 * 151.62548 * 13 3 2 19 19 C 1.52575 * 109.83809 * 191.40100 * 18 13 3 20 20 C 1.52289 * 112.00648 * 305.55965 * 19 18 13 21 21 C 1.52278 * 112.33611 * 47.23961 * 20 19 18 22 22 H 1.09005 * 109.47072 * 42.12008 * 1 2 3 23 23 H 1.09004 * 109.47628 * 162.12199 * 1 2 3 24 24 H 1.08999 * 109.47613 * 282.12384 * 1 2 3 25 25 H 1.08999 * 109.46923 * 239.99769 * 2 1 3 26 26 H 1.09002 * 109.46472 * 120.00123 * 2 1 3 27 27 H 0.97005 * 120.00177 * 179.97438 * 8 7 5 28 28 H 1.10120 * 108.02214 * 51.04972 * 14 13 3 29 29 H 1.10025 * 108.67057 * 186.97932 * 15 14 13 30 30 H 1.09502 * 109.81504 * 70.30904 * 15 14 13 31 31 H 1.08858 * 110.89312 * 279.28103 * 16 15 14 32 32 H 1.10692 * 107.91282 * 163.58515 * 16 15 14 33 33 H 1.10019 * 108.80042 * 194.91052 * 17 16 15 34 34 H 1.09492 * 109.63784 * 78.25999 * 17 16 15 35 35 H 1.10121 * 108.02035 * 308.94655 * 18 13 3 36 36 H 1.09534 * 109.02069 * 66.65801 * 19 18 13 37 37 H 1.09518 * 109.07489 * 184.32884 * 19 18 13 38 38 H 1.08672 * 110.83699 * 282.63214 * 20 19 18 39 39 H 1.10508 * 108.08448 * 166.39328 * 20 19 18 40 40 H 1.09517 * 109.39361 * 191.67831 * 21 20 19 41 41 H 1.09539 * 109.30598 * 73.65647 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9814 -0.8420 5 6 3.5420 1.4442 -0.1232 6 1 4.1561 1.3160 0.7560 7 6 4.1321 1.6094 -1.3582 8 7 5.4429 1.6114 -1.4656 9 14 3.0701 1.8318 -2.8787 10 1 2.7740 0.5040 -3.4742 11 1 1.7986 2.4995 -2.5010 12 1 3.7933 2.6685 -3.8697 13 7 1.6530 2.0958 1.2482 14 6 0.2733 2.5767 1.2375 15 6 0.0954 3.7251 0.2561 16 6 1.1029 4.8443 0.4696 17 6 2.5181 4.3325 0.6886 18 6 2.5768 3.1545 1.6494 19 6 2.2742 3.5911 3.0797 20 6 0.8171 3.9969 3.2563 21 6 -0.1435 2.9841 2.6478 22 1 -0.3633 0.7623 -0.6893 23 1 -0.3634 -0.9780 -0.3155 24 1 -0.3634 0.2158 1.0047 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 5.8582 1.7272 -2.3346 28 1 -0.3747 1.7455 0.9184 29 1 -0.9192 4.1344 0.3730 30 1 0.1727 3.3515 -0.7704 31 1 0.7942 5.4939 1.2867 32 1 1.1064 5.4771 -0.4387 33 1 3.1317 5.1498 1.0959 34 1 2.9601 4.0498 -0.2724 35 1 3.5976 2.7419 1.6287 36 1 2.5054 2.7656 3.7614 37 1 2.9209 4.4357 3.3404 38 1 0.6403 4.9895 2.8507 39 1 0.6076 4.0606 4.3394 40 1 -1.1506 3.4131 2.6135 41 1 -0.1779 2.0914 3.2816 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707101875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:52 Heat of formation + Delta-G solvation = -7.599643 kcal Electronic energy + Delta-G solvation = -19149.005776 eV Core-core repulsion = 16642.025456 eV Total energy + Delta-G solvation = -2506.980319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93903 -34.95306 -32.62885 -32.36202 -31.68887 -30.35677 -27.36518 -25.53101 -24.17303 -22.26915 -21.17316 -20.65022 -19.50881 -17.17862 -16.76916 -15.72347 -14.70607 -14.39326 -13.78200 -13.58459 -13.52784 -12.89538 -12.81571 -12.75178 -12.61805 -12.37191 -12.08540 -11.71404 -11.15899 -11.04105 -10.90269 -10.87073 -10.53148 -10.42225 -10.30087 -10.24224 -9.82968 -9.74828 -9.43136 -9.31989 -8.88786 -8.74246 -8.51450 -6.90662 -6.08363 -4.06407 3.25687 3.33677 3.35179 4.38952 4.87101 5.16936 5.26792 5.38116 5.43774 5.44671 5.66502 5.72683 5.83974 5.89876 5.95954 5.97656 6.06138 6.17792 6.23403 6.33394 6.39026 6.40934 6.42300 6.48136 6.55446 6.60724 6.68195 6.71428 6.74574 6.86154 6.91971 6.99439 7.02151 7.26119 7.32646 7.53122 7.66285 8.21975 8.44241 8.78800 8.98458 9.55467 11.03941 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025075 B = 0.011795 C = 0.010500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.369759 B = 2373.369019 C = 2666.095648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C 0.180 3.820 4 H 0.020 0.980 5 C -0.501 4.501 6 H 0.081 0.919 7 C 0.075 3.925 8 N -0.899 5.899 9 Si 0.863 3.137 10 H -0.276 1.276 11 H -0.261 1.261 12 H -0.290 1.290 13 N -0.527 5.527 14 C 0.069 3.931 15 C -0.140 4.140 16 C -0.106 4.106 17 C -0.135 4.135 18 C 0.103 3.897 19 C -0.105 4.105 20 C -0.111 4.111 21 C -0.099 4.099 22 H 0.042 0.958 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.263 0.737 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.039 0.961 40 H 0.049 0.951 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.209 3.862 5.290 12.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.146 4.146 3 C 0.074 3.926 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.127 4.127 8 N -0.537 5.537 9 Si 0.692 3.308 10 H -0.202 1.202 11 H -0.186 1.186 12 H -0.216 1.216 13 N -0.250 5.250 14 C -0.039 4.039 15 C -0.179 4.179 16 C -0.144 4.144 17 C -0.174 4.174 18 C -0.005 4.005 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.137 4.137 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.015 3.524 5.484 11.950 hybrid contribution -0.533 0.844 -1.668 1.944 sum -10.549 4.368 3.816 12.038 Atomic orbital electron populations 1.22132 0.98982 0.99474 1.00688 1.21710 0.92308 0.99609 1.01000 1.19684 0.96007 0.90213 0.86733 0.96254 1.20999 0.89127 1.48840 0.94997 0.90079 1.24951 0.94613 0.94763 0.98374 1.69890 1.08797 1.50563 1.24447 0.87064 0.81297 0.78788 0.83699 1.20173 1.18614 1.21647 1.60366 0.99696 1.29315 1.35637 1.21703 0.93030 0.95763 0.93451 1.21784 0.98013 0.97616 1.00483 1.21225 0.96027 0.96927 1.00217 1.21708 0.94855 0.98645 1.02183 1.21075 0.99131 0.89420 0.90875 1.21430 0.94989 0.99986 0.97892 1.21317 0.95904 0.98646 0.99003 1.21324 0.97193 0.98702 0.96519 0.93901 0.94527 0.92275 0.93129 0.92153 0.92729 0.89286 0.93425 0.92703 0.92558 0.94572 0.93575 0.91062 0.87998 0.92367 0.93030 0.92437 0.94206 0.93245 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 8.24 37.16 0.31 -2.38 16 2 C -0.11 -2.25 5.58 -26.73 -0.15 -2.40 16 3 C 0.18 4.08 1.00 -69.30 -0.07 4.01 16 4 H 0.02 0.47 3.10 -51.93 -0.16 0.31 16 5 C -0.50 -13.26 6.51 -34.44 -0.22 -13.49 16 6 H 0.08 2.37 6.84 -52.49 -0.36 2.01 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 9 Si 0.86 21.18 27.58 -169.99 -4.69 16.49 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.26 -6.19 5.95 56.52 0.34 -5.86 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 N -0.53 -10.63 4.08 -214.65 -0.88 -11.50 16 14 C 0.07 1.20 2.26 -68.80 -0.16 1.05 16 15 C -0.14 -2.41 4.96 -27.65 -0.14 -2.54 16 16 C -0.11 -1.83 5.09 -27.66 -0.14 -1.97 16 17 C -0.13 -2.63 5.01 -27.65 -0.14 -2.77 16 18 C 0.10 2.06 2.15 -68.80 -0.15 1.91 16 19 C -0.10 -1.74 5.50 -27.31 -0.15 -1.89 16 20 C -0.11 -1.63 5.16 -27.46 -0.14 -1.77 16 21 C -0.10 -1.49 5.50 -27.31 -0.15 -1.64 16 22 H 0.04 0.74 7.44 -51.93 -0.39 0.35 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.96 6.35 -51.93 -0.33 0.63 16 25 H 0.05 1.10 8.11 -51.93 -0.42 0.68 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.09 1.52 3.55 -51.29 -0.18 1.33 16 29 H 0.05 0.71 8.17 -51.35 -0.42 0.29 16 30 H 0.05 1.05 7.04 -51.64 -0.36 0.68 16 31 H 0.06 0.87 5.76 -52.01 -0.30 0.57 16 32 H 0.04 0.60 8.28 -50.96 -0.42 0.18 16 33 H 0.05 0.83 8.17 -51.35 -0.42 0.41 16 34 H 0.07 1.63 7.32 -51.65 -0.38 1.25 16 35 H 0.10 2.36 5.67 -51.29 -0.29 2.07 16 36 H 0.06 0.97 8.19 -51.63 -0.42 0.55 16 37 H 0.05 0.79 8.14 -51.64 -0.42 0.37 16 38 H 0.06 0.82 5.60 -52.11 -0.29 0.53 16 39 H 0.04 0.52 8.27 -51.07 -0.42 0.10 16 40 H 0.05 0.65 8.14 -51.64 -0.42 0.23 16 41 H 0.06 0.88 8.19 -51.62 -0.42 0.46 16 LS Contribution 285.14 15.07 4.30 4.30 Total: -1.00 -27.54 285.14 -8.77 -36.31 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.88 Total: 2.13 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -1.40 Total: -21.91 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.10 Total: -37.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.69 Total: 16.49 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.54 -8.77 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707101875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.712 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds