Wall clock time and date at job start Sun Mar 29 2020 22:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47229 * 2 1 4 4 H 1.08996 * 109.47228 * 304.97341 * 3 2 1 5 5 C 1.50703 * 109.46997 * 184.97331 * 3 2 1 6 6 H 1.08000 * 119.99986 * 276.25959 * 5 3 2 7 7 C 1.37873 * 119.99632 * 96.25762 * 5 3 2 8 8 N 1.31519 * 119.99585 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00444 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46846 * 269.99643 * 9 7 5 11 11 H 1.48500 * 109.47049 * 29.99210 * 9 7 5 12 12 H 1.48499 * 109.47443 * 149.99672 * 9 7 5 13 13 N 1.46101 * 109.46968 * 64.97774 * 3 2 1 14 14 C 1.46120 * 113.01869 * 278.93825 * 13 3 2 15 15 C 1.52106 * 111.32130 * 292.26304 * 14 13 3 16 16 C 1.52093 * 112.80334 * 307.70702 * 15 14 13 17 17 C 1.52081 * 112.88889 * 44.41545 * 16 15 14 18 18 C 1.46123 * 113.02438 * 151.62548 * 13 3 2 19 19 C 1.52575 * 109.83809 * 191.40100 * 18 13 3 20 20 C 1.52289 * 112.00648 * 305.55965 * 19 18 13 21 21 C 1.52278 * 112.33611 * 47.23961 * 20 19 18 22 22 H 1.09005 * 109.47072 * 42.12008 * 1 2 3 23 23 H 1.09004 * 109.47628 * 162.12199 * 1 2 3 24 24 H 1.08999 * 109.47613 * 282.12384 * 1 2 3 25 25 H 1.08999 * 109.46923 * 239.99769 * 2 1 3 26 26 H 1.09002 * 109.46472 * 120.00123 * 2 1 3 27 27 H 0.97005 * 120.00177 * 179.97438 * 8 7 5 28 28 H 1.10120 * 108.02214 * 51.04972 * 14 13 3 29 29 H 1.10025 * 108.67057 * 186.97932 * 15 14 13 30 30 H 1.09502 * 109.81504 * 70.30904 * 15 14 13 31 31 H 1.08858 * 110.89312 * 279.28103 * 16 15 14 32 32 H 1.10692 * 107.91282 * 163.58515 * 16 15 14 33 33 H 1.10019 * 108.80042 * 194.91052 * 17 16 15 34 34 H 1.09492 * 109.63784 * 78.25999 * 17 16 15 35 35 H 1.10121 * 108.02035 * 308.94655 * 18 13 3 36 36 H 1.09534 * 109.02069 * 66.65801 * 19 18 13 37 37 H 1.09518 * 109.07489 * 184.32884 * 19 18 13 38 38 H 1.08672 * 110.83699 * 282.63214 * 20 19 18 39 39 H 1.10508 * 108.08448 * 166.39328 * 20 19 18 40 40 H 1.09517 * 109.39361 * 191.67831 * 21 20 19 41 41 H 1.09539 * 109.30598 * 73.65647 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9814 -0.8420 5 6 3.5420 1.4442 -0.1232 6 1 4.1561 1.3160 0.7560 7 6 4.1321 1.6094 -1.3582 8 7 5.4429 1.6114 -1.4656 9 14 3.0701 1.8318 -2.8787 10 1 2.7740 0.5040 -3.4742 11 1 1.7986 2.4995 -2.5010 12 1 3.7933 2.6685 -3.8697 13 7 1.6530 2.0958 1.2482 14 6 0.2733 2.5767 1.2375 15 6 0.0954 3.7251 0.2561 16 6 1.1029 4.8443 0.4696 17 6 2.5181 4.3325 0.6886 18 6 2.5768 3.1545 1.6494 19 6 2.2742 3.5911 3.0797 20 6 0.8171 3.9969 3.2563 21 6 -0.1435 2.9841 2.6478 22 1 -0.3633 0.7623 -0.6893 23 1 -0.3634 -0.9780 -0.3155 24 1 -0.3634 0.2158 1.0047 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 5.8582 1.7272 -2.3346 28 1 -0.3747 1.7455 0.9184 29 1 -0.9192 4.1344 0.3730 30 1 0.1727 3.3515 -0.7704 31 1 0.7942 5.4939 1.2867 32 1 1.1064 5.4771 -0.4387 33 1 3.1317 5.1498 1.0959 34 1 2.9601 4.0498 -0.2724 35 1 3.5976 2.7419 1.6287 36 1 2.5054 2.7656 3.7614 37 1 2.9209 4.4357 3.3404 38 1 0.6403 4.9895 2.8507 39 1 0.6076 4.0606 4.3394 40 1 -1.1506 3.4131 2.6135 41 1 -0.1779 2.0914 3.2816 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707101875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:52 Heat of formation + Delta-G solvation = -23.932165 kcal Electronic energy + Delta-G solvation = -19149.714007 eV Core-core repulsion = 16642.025456 eV Total energy + Delta-G solvation = -2507.688551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42367 -36.61121 -34.43534 -33.69699 -33.37940 -31.85899 -29.15863 -26.88324 -25.83458 -23.87926 -22.66339 -22.12163 -21.07460 -19.06937 -18.34565 -17.35584 -16.30563 -16.06440 -15.31201 -15.10674 -15.04103 -14.73314 -14.22197 -14.12886 -14.09220 -13.90830 -13.73837 -13.31694 -12.88459 -12.53395 -12.44635 -12.32586 -12.17932 -11.78237 -11.77529 -11.71179 -11.68191 -11.43230 -11.12503 -10.80603 -10.67584 -10.42374 -10.26828 -8.52373 -8.26049 -6.26148 1.27036 1.28795 1.36273 2.30921 3.05660 3.42848 3.84493 4.05396 4.06896 4.21583 4.32311 4.42717 4.43919 4.47600 4.51992 4.53472 4.63772 4.72520 4.82828 4.94156 5.00225 5.05217 5.13505 5.17216 5.19339 5.23011 5.27260 5.29179 5.33714 5.38483 5.40005 5.43357 5.54590 5.62307 5.66041 5.79227 5.92790 6.21490 6.65226 6.86891 7.05685 7.39911 8.89881 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025075 B = 0.011795 C = 0.010500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.369759 B = 2373.369019 C = 2666.095648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.186 3.814 4 H 0.012 0.988 5 C -0.487 4.487 6 H 0.038 0.962 7 C 0.021 3.979 8 N -0.949 5.949 9 Si 0.919 3.081 10 H -0.267 1.267 11 H -0.247 1.247 12 H -0.293 1.293 13 N -0.533 5.533 14 C 0.062 3.938 15 C -0.141 4.141 16 C -0.104 4.104 17 C -0.132 4.132 18 C 0.105 3.895 19 C -0.099 4.099 20 C -0.109 4.109 21 C -0.097 4.097 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.262 0.738 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.025 0.975 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.972 4.854 6.165 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C 0.079 3.921 4 H 0.029 0.971 5 C -0.526 4.526 6 H 0.056 0.944 7 C -0.176 4.176 8 N -0.590 5.590 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.171 1.171 12 H -0.219 1.219 13 N -0.256 5.256 14 C -0.046 4.046 15 C -0.180 4.180 16 C -0.141 4.141 17 C -0.171 4.171 18 C -0.004 4.004 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.135 4.135 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.807 4.515 6.374 15.864 hybrid contribution 0.715 0.527 -1.836 2.040 sum -13.092 5.041 4.538 14.745 Atomic orbital electron populations 1.22002 0.95366 1.00993 1.01791 1.21611 0.95542 0.97719 0.99831 1.19525 0.92995 0.91722 0.87896 0.97097 1.21166 0.91345 1.46807 0.93268 0.94416 1.25646 0.95518 0.95082 1.01384 1.70037 1.10705 1.53212 1.25025 0.86156 0.80159 0.79067 0.80095 1.19225 1.17108 1.21919 1.60336 1.01639 1.29880 1.33791 1.21916 0.90729 0.96296 0.95624 1.21794 0.99809 0.97441 0.98950 1.21211 0.93987 0.97329 1.01566 1.21646 0.97028 0.98798 0.99674 1.20966 0.96616 0.89357 0.93460 1.21355 0.97471 1.00142 0.94777 1.21290 0.93611 0.98945 1.00833 1.21329 0.98675 0.99092 0.94355 0.93633 0.92283 0.90822 0.94652 0.93110 0.92908 0.88546 0.89913 0.95120 0.89638 0.94333 0.92742 0.95645 0.93231 0.93016 0.92008 0.91336 0.91690 0.90089 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 8.24 71.98 0.59 -3.99 16 2 C -0.11 -4.49 5.58 30.59 0.17 -4.32 16 3 C 0.19 8.53 1.00 44.32 0.04 8.57 16 4 H 0.01 0.55 3.10 -2.39 -0.01 0.54 16 5 C -0.49 -27.25 6.51 25.60 0.17 -27.09 16 6 H 0.04 2.39 6.84 -2.91 -0.02 2.37 16 7 C 0.02 1.20 5.47 84.65 0.46 1.67 16 8 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 9 Si 0.92 44.86 27.58 68.60 1.89 46.75 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.25 -11.36 5.95 99.48 0.59 -10.77 16 12 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 13 N -0.53 -21.26 4.08 -833.03 -3.40 -24.66 16 14 C 0.06 1.97 2.26 44.63 0.10 2.07 16 15 C -0.14 -4.36 4.96 30.00 0.15 -4.21 16 16 C -0.10 -3.28 5.09 29.99 0.15 -3.13 16 17 C -0.13 -5.18 5.01 30.00 0.15 -5.03 16 18 C 0.10 4.23 2.15 44.63 0.10 4.32 16 19 C -0.10 -3.14 5.50 30.22 0.17 -2.97 16 20 C -0.11 -2.72 5.16 30.12 0.16 -2.57 16 21 C -0.10 -2.43 5.50 30.22 0.17 -2.26 16 22 H 0.04 1.42 7.44 -2.38 -0.02 1.41 16 23 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.07 2.13 6.35 -2.39 -0.02 2.11 16 25 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 28 H 0.10 2.91 3.55 -1.79 -0.01 2.91 16 29 H 0.08 2.02 8.17 -1.84 -0.02 2.00 16 30 H 0.03 1.08 7.04 -2.12 -0.01 1.07 16 31 H 0.09 2.24 5.76 -2.46 -0.01 2.23 16 32 H 0.04 1.20 8.28 -1.48 -0.01 1.19 16 33 H 0.05 1.97 8.17 -1.84 -0.02 1.96 16 34 H 0.02 1.19 7.32 -2.13 -0.02 1.18 16 35 H 0.05 2.48 5.67 -1.79 -0.01 2.47 16 36 H 0.05 1.68 8.19 -2.10 -0.02 1.66 16 37 H 0.06 1.80 8.14 -2.11 -0.02 1.78 16 38 H 0.07 1.58 5.60 -2.56 -0.01 1.56 16 39 H 0.06 1.36 8.27 -1.58 -0.01 1.35 16 40 H 0.08 1.60 8.14 -2.11 -0.02 1.59 16 41 H 0.06 1.53 8.19 -2.10 -0.02 1.51 16 Total: -1.00 -63.51 285.14 2.28 -61.22 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.92 Total: 14.66 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 2.58 Total: -38.93 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -3.10 Total: -83.70 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.89 Total: 46.75 kcal Total: -63.51 2.28 -61.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707101875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.291 kcal (2) G-P(sol) polarization free energy of solvation -63.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds