Wall clock time and date at job start Sun Mar 29 2020 22:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 H 1.08997 * 109.47255 * 300.28904 * 3 2 1 5 5 C 1.50697 * 109.47399 * 180.28424 * 3 2 1 6 6 H 1.08005 * 120.00255 * 275.07253 * 5 3 2 7 7 C 1.37881 * 119.99842 * 95.06721 * 5 3 2 8 8 N 1.31508 * 119.99833 * 174.97675 * 7 5 3 9 9 Si 1.86801 * 119.99785 * 354.98199 * 7 5 3 10 10 H 1.48495 * 109.47059 * 94.95747 * 9 7 5 11 11 H 1.48506 * 109.46934 * 214.95251 * 9 7 5 12 12 H 1.48493 * 109.47205 * 334.95142 * 9 7 5 13 13 N 1.46905 * 109.46957 * 60.28815 * 3 2 1 14 14 C 1.47534 * 110.99992 * 155.66823 * 13 3 2 15 15 C 1.53561 * 87.99101 * 138.42799 * 14 13 3 16 16 C 1.47158 * 110.99995 * 251.55248 * 13 3 2 17 17 C 1.52841 * 113.47601 * 106.67695 * 16 13 3 18 18 C 1.53120 * 109.22492 * 172.71297 * 17 16 13 19 19 C 1.52968 * 109.44515 * 57.99796 * 18 17 16 20 20 C 1.52969 * 109.68770 * 298.37742 * 19 18 17 21 21 C 1.52844 * 113.46558 * 336.35869 * 16 13 3 22 22 H 1.08997 * 109.47556 * 299.99863 * 1 2 3 23 23 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47067 * 59.99874 * 1 2 3 25 25 H 1.09000 * 109.47067 * 120.00126 * 2 1 3 26 26 H 1.08997 * 109.47556 * 240.00136 * 2 1 3 27 27 H 0.97003 * 119.99981 * 180.02562 * 8 7 5 28 28 H 1.08997 * 113.46469 * 253.20116 * 14 13 3 29 29 H 1.08998 * 113.46565 * 23.58914 * 14 13 3 30 30 H 1.08989 * 114.18894 * 87.84309 * 15 14 13 31 31 H 1.09005 * 114.17901 * 220.60076 * 15 14 13 32 32 H 1.08995 * 109.51182 * 292.64345 * 17 16 13 33 33 H 1.09005 * 109.51002 * 52.79113 * 17 16 13 34 34 H 1.08999 * 109.47733 * 298.00402 * 18 17 16 35 35 H 1.09004 * 109.47926 * 177.99240 * 18 17 16 36 36 H 1.09002 * 109.43590 * 178.31062 * 19 18 17 37 37 H 1.09001 * 109.43205 * 58.44281 * 19 18 17 38 38 H 1.09003 * 109.47535 * 301.63467 * 20 19 18 39 39 H 1.09000 * 109.48470 * 181.61744 * 20 19 18 40 40 H 1.08998 * 109.51091 * 307.21536 * 21 16 13 41 41 H 1.08998 * 109.51157 * 67.37073 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6724 1.9578 -0.8873 5 6 3.5469 1.4425 -0.0070 6 1 4.0913 1.3583 0.9219 7 6 4.2307 1.5500 -1.1995 8 7 5.5420 1.6495 -1.1989 9 14 3.2944 1.5543 -2.8159 10 1 3.0452 2.9555 -3.2398 11 1 4.0962 0.8582 -3.8542 12 1 1.9978 0.8526 -2.6388 13 7 1.5560 2.1330 1.2030 14 6 2.4364 3.2636 1.5539 15 6 1.1735 4.0811 1.8619 16 6 0.5194 3.1207 0.8630 17 6 -0.8894 2.6890 1.2691 18 6 -1.8588 3.8519 1.0398 19 6 -1.8103 4.2731 -0.4299 20 6 -0.4015 4.7540 -0.7820 21 6 0.5930 3.6066 -0.5842 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 6.0231 1.7255 -2.0378 28 1 3.0560 3.0754 2.4306 29 1 3.0076 3.6475 0.7086 30 1 0.8119 3.9760 2.8847 31 1 1.2178 5.1161 1.5226 32 1 -1.1965 1.8347 0.6659 33 1 -0.8957 2.4123 2.3234 34 1 -1.5711 4.6943 1.6689 35 1 -2.8708 3.5371 1.2945 36 1 -2.5222 5.0809 -0.5994 37 1 -2.0712 3.4225 -1.0597 38 1 -0.1291 5.5868 -0.1336 39 1 -0.3779 5.0802 -1.8218 40 1 1.6021 3.9583 -0.7993 41 1 0.3413 2.7867 -1.2568 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707345786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:02 Heat of formation + Delta-G solvation = 5.782034 kcal Electronic energy + Delta-G solvation = -18881.941372 eV Core-core repulsion = 16375.541326 eV Total energy + Delta-G solvation = -2506.400046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.16249 -37.31167 -35.63831 -34.08501 -31.95199 -30.38268 -29.29343 -27.67888 -24.66154 -24.08723 -23.25995 -21.43271 -21.26349 -19.20450 -18.41313 -17.31278 -16.52898 -16.29559 -15.54346 -15.27145 -14.95396 -14.71101 -14.69255 -14.10713 -13.91590 -13.70373 -13.35068 -13.14787 -12.90645 -12.86939 -12.72383 -12.38244 -12.08561 -12.01766 -11.85397 -11.61184 -11.49687 -11.20470 -11.11169 -10.96790 -10.86869 -10.72033 -10.47914 -9.28290 -8.33559 -6.34297 1.23084 1.27860 1.38095 2.27202 2.99112 3.35032 3.67746 3.84569 4.02861 4.15402 4.33000 4.33774 4.42126 4.46389 4.51420 4.57067 4.64750 4.69225 4.79086 4.81999 4.85184 4.91975 5.00570 5.04363 5.12246 5.17577 5.23325 5.27624 5.32310 5.33968 5.39827 5.42275 5.44397 5.53806 5.59397 5.66092 5.80058 5.88803 6.23834 6.65726 6.73263 7.31368 8.83531 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025686 B = 0.010164 C = 0.010045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.809375 B = 2754.091992 C = 2786.782329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C 0.136 3.864 4 H 0.043 0.957 5 C -0.505 4.505 6 H 0.029 0.971 7 C 0.018 3.982 8 N -0.946 5.946 9 Si 0.922 3.078 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.241 1.241 13 N -0.471 5.471 14 C 0.021 3.979 15 C -0.125 4.125 16 C 0.062 3.938 17 C -0.103 4.103 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.110 4.110 21 C -0.125 4.125 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.264 0.736 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.996 6.046 1.655 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C 0.028 3.972 4 H 0.060 0.940 5 C -0.543 4.543 6 H 0.047 0.953 7 C -0.180 4.180 8 N -0.586 5.586 9 Si 0.746 3.254 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.164 1.164 13 N -0.193 5.193 14 C -0.109 4.109 15 C -0.163 4.163 16 C -0.029 4.029 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.163 4.163 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.958 5.464 2.011 17.929 hybrid contribution 1.267 0.100 -1.548 2.003 sum -15.690 5.564 0.463 16.654 Atomic orbital electron populations 1.22044 0.95226 1.01328 1.01966 1.21526 0.95803 0.97774 0.99195 1.20374 0.92679 0.92998 0.91165 0.93976 1.21235 0.91298 1.48753 0.93055 0.95273 1.25774 0.95371 0.94470 1.02354 1.70051 1.08530 1.52217 1.27826 0.86112 0.80264 0.79283 0.79758 1.19257 1.21223 1.16448 1.68877 1.06106 1.15467 1.28826 1.23288 0.95759 0.92510 0.99333 1.23240 0.95299 0.97866 0.99893 1.22429 0.94558 0.92392 0.93518 1.21659 0.92087 0.98881 1.01407 1.21498 0.99040 0.97837 0.96386 1.21505 0.95811 1.01150 0.96780 1.21509 0.94965 0.96900 1.01479 1.21776 0.99127 0.98806 0.96612 0.90294 0.92608 0.93920 0.94113 0.94861 0.92652 0.93039 0.93481 0.88313 0.90196 0.91246 0.91502 0.91347 0.90414 0.90192 0.92606 0.91066 0.91894 0.94314 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 8.50 71.98 0.61 -4.47 16 2 C -0.10 -4.55 5.39 30.59 0.16 -4.39 16 3 C 0.14 6.36 1.11 44.17 0.05 6.41 16 4 H 0.04 1.96 1.80 -2.39 0.00 1.95 16 5 C -0.50 -28.95 6.96 25.60 0.18 -28.77 16 6 H 0.03 1.90 7.80 -2.91 -0.02 1.88 16 7 C 0.02 1.05 5.47 84.66 0.46 1.51 16 8 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 9 Si 0.92 44.32 26.58 68.60 1.82 46.14 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 12 H -0.24 -10.80 6.09 99.48 0.61 -10.19 16 13 N -0.47 -19.49 5.50 -861.40 -4.73 -24.23 16 14 C 0.02 0.85 6.08 83.27 0.51 1.36 16 15 C -0.13 -3.86 7.13 30.86 0.22 -3.64 16 16 C 0.06 2.00 0.51 0.35 0.00 2.00 16 17 C -0.10 -2.70 4.29 30.58 0.13 -2.57 16 18 C -0.11 -2.18 5.84 30.62 0.18 -2.00 16 19 C -0.12 -2.32 5.87 30.57 0.18 -2.14 16 20 C -0.11 -2.73 5.83 30.63 0.18 -2.55 16 21 C -0.12 -4.17 3.44 30.58 0.11 -4.07 16 22 H 0.08 2.57 4.60 -2.39 -0.01 2.56 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.04 1.40 8.06 -2.39 -0.02 1.38 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.03 1.50 7.15 -2.39 -0.02 1.48 16 27 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 2.26 6.24 -2.39 -0.01 2.24 16 30 H 0.10 2.70 8.10 -2.39 -0.02 2.68 16 31 H 0.08 2.19 7.35 -2.38 -0.02 2.18 16 32 H 0.07 1.89 5.08 -2.39 -0.01 1.88 16 33 H 0.07 1.74 8.12 -2.38 -0.02 1.72 16 34 H 0.07 1.28 7.94 -2.39 -0.02 1.26 16 35 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.63 7.35 -2.39 -0.02 1.61 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.52 6.81 -2.39 -0.02 1.50 16 41 H 0.05 1.95 6.77 -2.39 -0.02 1.93 16 Total: -1.00 -64.73 291.20 1.24 -63.49 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.89 Total: 17.12 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 2.97 Total: -43.31 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -4.44 Total: -83.44 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.82 Total: 46.14 kcal Total: -64.73 1.24 -63.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707345786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.274 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds