Wall clock time and date at job start Sun Mar 29 2020 22:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47548 * 2 1 4 4 H 1.09001 * 109.47187 * 54.99598 * 3 2 1 5 5 C 1.50701 * 109.47558 * 174.99746 * 3 2 1 6 6 H 1.07998 * 119.99506 * 125.73444 * 5 3 2 7 7 C 1.37875 * 120.00036 * 305.74110 * 5 3 2 8 8 N 1.31512 * 119.99818 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99700 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47425 * 89.99864 * 9 7 5 11 11 H 1.48503 * 109.46938 * 209.99725 * 9 7 5 12 12 H 1.48500 * 109.47219 * 329.99641 * 9 7 5 13 13 N 1.46902 * 109.47203 * 295.00506 * 3 2 1 14 14 C 1.47543 * 110.99743 * 266.59541 * 13 3 2 15 15 C 1.53556 * 87.99174 * 221.57572 * 14 13 3 16 16 C 1.47164 * 111.00349 * 170.71182 * 13 3 2 17 17 C 1.52836 * 113.46310 * 23.63330 * 16 13 3 18 18 C 1.53124 * 109.22967 * 172.73806 * 17 16 13 19 19 C 1.52961 * 109.44850 * 57.98033 * 18 17 16 20 20 C 1.52979 * 109.68644 * 298.37797 * 19 18 17 21 21 C 1.52835 * 113.46570 * 253.31233 * 16 13 3 22 22 H 1.09002 * 109.46667 * 300.00040 * 1 2 3 23 23 H 1.08996 * 109.47215 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46969 * 59.99976 * 1 2 3 25 25 H 1.09004 * 109.46969 * 120.00024 * 2 1 3 26 26 H 1.09002 * 109.47384 * 240.00170 * 2 1 3 27 27 H 0.97002 * 119.99533 * 180.02562 * 8 7 5 28 28 H 1.09007 * 113.46359 * 336.35709 * 14 13 3 29 29 H 1.08997 * 113.46327 * 106.78792 * 14 13 3 30 30 H 1.09006 * 114.18212 * 272.15121 * 15 14 13 31 31 H 1.08999 * 114.36286 * 139.41708 * 15 14 13 32 32 H 1.09002 * 109.50850 * 292.66083 * 17 16 13 33 33 H 1.08991 * 109.51576 * 52.80834 * 17 16 13 34 34 H 1.09002 * 109.46742 * 297.98903 * 18 17 16 35 35 H 1.08994 * 109.47910 * 177.97687 * 18 17 16 36 36 H 1.09009 * 109.43701 * 178.31579 * 19 18 17 37 37 H 1.09004 * 109.43916 * 58.44676 * 19 18 17 38 38 H 1.09002 * 109.47382 * 301.64347 * 20 19 18 39 39 H 1.08997 * 109.48098 * 181.62456 * 20 19 18 40 40 H 1.08994 * 109.51497 * 307.19677 * 21 16 13 41 41 H 1.09005 * 109.51516 * 67.34997 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1431 1.9688 -0.6040 7 6 4.1485 0.7761 1.1663 8 7 3.4163 0.1376 2.0528 9 14 6.0102 0.7778 1.3194 10 1 6.4383 1.9381 2.1414 11 1 6.4545 -0.4808 1.9704 12 1 6.6179 0.8773 -0.0319 13 7 1.6514 2.0993 -1.2552 14 6 2.7229 1.9891 -2.2634 15 6 2.4414 3.4500 -2.6435 16 6 1.9287 3.5436 -1.2025 17 6 3.0148 3.9184 -0.1946 18 6 3.3526 5.4042 -0.3464 19 6 2.0880 6.2382 -0.1345 20 6 1.0486 5.8775 -1.1974 21 6 0.6709 4.4000 -1.0600 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.8431 -0.3322 2.7863 28 1 3.7118 1.8359 -1.8309 29 1 2.4971 1.2816 -3.0612 30 1 1.6679 3.5730 -3.4016 31 1 3.3343 4.0437 -2.8393 32 1 2.6543 3.7285 0.8164 33 1 3.9070 3.3212 -0.3820 34 1 3.7452 5.5871 -1.3466 35 1 4.1011 5.6843 0.3947 36 1 2.3345 7.2972 -0.2129 37 1 1.6803 6.0338 0.8556 38 1 1.4657 6.0554 -2.1886 39 1 0.1601 6.4940 -1.0610 40 1 -0.0420 4.1325 -1.8399 41 1 0.2224 4.2284 -0.0814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707345790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:05 Heat of formation + Delta-G solvation = 41.302454 kcal Electronic energy + Delta-G solvation = -18784.894657 eV Core-core repulsion = 16280.034892 eV Total energy + Delta-G solvation = -2504.859765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56085 -35.93239 -33.79768 -31.46532 -30.39626 -28.19974 -28.00532 -25.81219 -22.89115 -22.22659 -21.87608 -20.14623 -19.36597 -17.22105 -16.42857 -15.58863 -14.82481 -14.41430 -13.97472 -13.66367 -13.22312 -13.05172 -12.87289 -12.36058 -12.09190 -11.80994 -11.67637 -11.45146 -11.30933 -10.99806 -10.73609 -10.55233 -10.46918 -10.32899 -10.16911 -10.02025 -9.83115 -9.58537 -9.43358 -9.15222 -8.98613 -8.56495 -8.30845 -7.38998 -6.00125 -4.10478 3.23803 3.31778 3.33113 4.35241 4.97581 5.16516 5.25785 5.31418 5.43990 5.57037 5.79220 5.87302 5.94128 6.09144 6.11277 6.21199 6.26925 6.31412 6.40462 6.46737 6.49280 6.52495 6.55266 6.64778 6.72037 6.75068 6.80761 6.85118 6.94429 7.00812 7.17054 7.23306 7.33493 7.42729 7.63691 7.76652 7.98973 8.18054 8.27943 8.47196 8.94818 9.51003 10.97829 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.011078 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.328979 B = 2527.034103 C = 3178.385695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.183 3.817 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.084 0.916 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.882 3.118 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.471 5.471 14 C -0.013 4.013 15 C -0.147 4.147 16 C 0.072 3.928 17 C -0.126 4.126 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.092 4.092 22 H 0.035 0.965 23 H 0.024 0.976 24 H 0.045 0.955 25 H 0.103 0.897 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 7.684 -5.181 9.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.076 3.924 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.101 0.899 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.193 5.193 14 C -0.142 4.142 15 C -0.185 4.185 16 C -0.019 4.019 17 C -0.164 4.164 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.130 4.130 22 H 0.054 0.946 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.415 7.261 -5.106 9.200 hybrid contribution 1.731 0.136 0.523 1.813 sum -0.685 7.398 -4.584 8.729 Atomic orbital electron populations 1.21707 0.99319 0.98269 1.00193 1.21576 0.91808 0.99194 1.02425 1.19571 0.93326 0.91874 0.87629 0.95061 1.22061 0.92808 1.32540 1.10817 0.89893 1.24899 0.97637 0.95056 0.95876 1.69813 1.34599 1.33537 1.13985 0.86741 0.86278 0.77599 0.78351 1.20631 1.21197 1.19891 1.69034 1.37671 1.02967 1.09579 1.24145 0.99480 0.94555 0.96001 1.23241 1.00111 0.98309 0.96851 1.22145 0.93953 0.91669 0.94124 1.22409 1.00840 0.93630 0.99540 1.21637 0.96556 0.97136 1.00509 1.21505 0.96455 0.98385 0.99121 1.21475 0.98058 0.96598 0.98924 1.21320 0.97078 0.93306 1.01346 0.94596 0.95703 0.93593 0.87907 0.95442 0.92934 0.87474 0.92615 0.90963 0.92284 0.91164 0.87601 0.92927 0.92923 0.93296 0.92395 0.92458 0.92983 0.92331 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.80 37.16 0.36 -2.58 16 2 C -0.11 -2.72 5.40 -26.73 -0.14 -2.86 16 3 C 0.18 4.42 1.50 -68.86 -0.10 4.32 16 4 H 0.03 0.85 7.25 -51.93 -0.38 0.47 16 5 C -0.54 -13.52 5.04 -34.44 -0.17 -13.70 16 6 H 0.08 2.00 3.00 -52.49 -0.16 1.85 16 7 C 0.07 1.76 5.28 -17.82 -0.09 1.66 16 8 N -0.88 -24.03 10.88 55.43 0.60 -23.43 16 9 Si 0.88 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.47 -10.03 5.58 -223.58 -1.25 -11.27 16 14 C -0.01 -0.26 7.23 -7.96 -0.06 -0.32 16 15 C -0.15 -2.53 7.13 -26.32 -0.19 -2.72 16 16 C 0.07 1.34 0.73 -136.28 -0.10 1.24 16 17 C -0.13 -2.45 3.28 -26.75 -0.09 -2.54 16 18 C -0.12 -1.92 5.83 -26.69 -0.16 -2.08 16 19 C -0.12 -1.69 5.87 -26.76 -0.16 -1.85 16 20 C -0.11 -1.60 5.84 -26.68 -0.16 -1.76 16 21 C -0.09 -1.56 5.39 -26.75 -0.14 -1.71 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.04 0.96 7.75 -51.93 -0.40 0.55 16 25 H 0.10 2.76 5.49 -51.93 -0.28 2.48 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.11 2.31 4.29 -51.92 -0.22 2.08 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.06 0.94 7.35 -51.93 -0.38 0.56 16 32 H 0.07 1.55 6.88 -51.93 -0.36 1.20 16 33 H 0.11 2.25 4.22 -51.93 -0.22 2.03 16 34 H 0.05 0.79 7.35 -51.93 -0.38 0.41 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -25.62 294.95 -9.39 -35.01 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.98 Total: 4.93 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -1.20 Total: -24.88 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.64 Total: -34.70 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.62 -9.39 -35.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707345790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.313 kcal (2) G-P(sol) polarization free energy of solvation -25.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds