Wall clock time and date at job start Sun Mar 29 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47548 * 2 1 4 4 H 1.09001 * 109.47187 * 54.99598 * 3 2 1 5 5 C 1.50701 * 109.47558 * 174.99746 * 3 2 1 6 6 H 1.07998 * 119.99506 * 125.73444 * 5 3 2 7 7 C 1.37875 * 120.00036 * 305.74110 * 5 3 2 8 8 N 1.31512 * 119.99818 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99700 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47425 * 89.99864 * 9 7 5 11 11 H 1.48503 * 109.46938 * 209.99725 * 9 7 5 12 12 H 1.48500 * 109.47219 * 329.99641 * 9 7 5 13 13 N 1.46902 * 109.47203 * 295.00506 * 3 2 1 14 14 C 1.47543 * 110.99743 * 266.59541 * 13 3 2 15 15 C 1.53556 * 87.99174 * 221.57572 * 14 13 3 16 16 C 1.47164 * 111.00349 * 170.71182 * 13 3 2 17 17 C 1.52836 * 113.46310 * 23.63330 * 16 13 3 18 18 C 1.53124 * 109.22967 * 172.73806 * 17 16 13 19 19 C 1.52961 * 109.44850 * 57.98033 * 18 17 16 20 20 C 1.52979 * 109.68644 * 298.37797 * 19 18 17 21 21 C 1.52835 * 113.46570 * 253.31233 * 16 13 3 22 22 H 1.09002 * 109.46667 * 300.00040 * 1 2 3 23 23 H 1.08996 * 109.47215 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46969 * 59.99976 * 1 2 3 25 25 H 1.09004 * 109.46969 * 120.00024 * 2 1 3 26 26 H 1.09002 * 109.47384 * 240.00170 * 2 1 3 27 27 H 0.97002 * 119.99533 * 180.02562 * 8 7 5 28 28 H 1.09007 * 113.46359 * 336.35709 * 14 13 3 29 29 H 1.08997 * 113.46327 * 106.78792 * 14 13 3 30 30 H 1.09006 * 114.18212 * 272.15121 * 15 14 13 31 31 H 1.08999 * 114.36286 * 139.41708 * 15 14 13 32 32 H 1.09002 * 109.50850 * 292.66083 * 17 16 13 33 33 H 1.08991 * 109.51576 * 52.80834 * 17 16 13 34 34 H 1.09002 * 109.46742 * 297.98903 * 18 17 16 35 35 H 1.08994 * 109.47910 * 177.97687 * 18 17 16 36 36 H 1.09009 * 109.43701 * 178.31579 * 19 18 17 37 37 H 1.09004 * 109.43916 * 58.44676 * 19 18 17 38 38 H 1.09002 * 109.47382 * 301.64347 * 20 19 18 39 39 H 1.08997 * 109.48098 * 181.62456 * 20 19 18 40 40 H 1.08994 * 109.51497 * 307.19677 * 21 16 13 41 41 H 1.09005 * 109.51516 * 67.34997 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1431 1.9688 -0.6040 7 6 4.1485 0.7761 1.1663 8 7 3.4163 0.1376 2.0528 9 14 6.0102 0.7778 1.3194 10 1 6.4383 1.9381 2.1414 11 1 6.4545 -0.4808 1.9704 12 1 6.6179 0.8773 -0.0319 13 7 1.6514 2.0993 -1.2552 14 6 2.7229 1.9891 -2.2634 15 6 2.4414 3.4500 -2.6435 16 6 1.9287 3.5436 -1.2025 17 6 3.0148 3.9184 -0.1946 18 6 3.3526 5.4042 -0.3464 19 6 2.0880 6.2382 -0.1345 20 6 1.0486 5.8775 -1.1974 21 6 0.6709 4.4000 -1.0600 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.8431 -0.3322 2.7863 28 1 3.7118 1.8359 -1.8309 29 1 2.4971 1.2816 -3.0612 30 1 1.6679 3.5730 -3.4016 31 1 3.3343 4.0437 -2.8393 32 1 2.6543 3.7285 0.8164 33 1 3.9070 3.3212 -0.3820 34 1 3.7452 5.5871 -1.3466 35 1 4.1011 5.6843 0.3947 36 1 2.3345 7.2972 -0.2129 37 1 1.6803 6.0338 0.8556 38 1 1.4657 6.0554 -2.1886 39 1 0.1601 6.4940 -1.0610 40 1 -0.0420 4.1325 -1.8399 41 1 0.2224 4.2284 -0.0814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707345790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:04 Heat of formation + Delta-G solvation = 27.215235 kcal Electronic energy + Delta-G solvation = -18785.505525 eV Core-core repulsion = 16280.034892 eV Total energy + Delta-G solvation = -2505.470633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.13960 -37.37836 -35.58442 -33.39635 -31.80129 -29.92447 -29.41477 -27.61957 -24.64401 -23.81677 -23.26601 -21.58127 -21.11542 -18.89707 -18.14140 -17.31045 -16.46772 -16.00318 -15.51416 -15.19930 -14.81624 -14.65055 -14.44262 -13.96741 -13.65977 -13.52460 -13.23397 -13.09033 -12.73658 -12.69950 -12.42312 -12.33658 -11.95621 -11.77282 -11.71212 -11.60392 -11.38440 -11.24263 -11.15853 -10.85282 -10.64563 -10.37615 -10.16467 -9.13500 -7.98977 -6.14151 1.39217 1.42076 1.48843 2.42309 3.18944 3.50651 3.80760 3.99218 4.12817 4.29386 4.42285 4.50831 4.56362 4.57081 4.70567 4.74313 4.79768 4.86110 4.90008 4.93022 4.96652 5.02477 5.15126 5.16603 5.24209 5.28549 5.32320 5.39237 5.41045 5.43607 5.50959 5.54233 5.63232 5.73067 5.78526 5.92421 6.10463 6.21779 6.45440 6.51716 7.02700 7.49596 8.97705 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.011078 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.328979 B = 2527.034103 C = 3178.385695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C 0.195 3.805 4 H -0.009 1.009 5 C -0.539 4.539 6 H 0.094 0.906 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.940 3.060 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.264 1.264 13 N -0.483 5.483 14 C -0.019 4.019 15 C -0.123 4.123 16 C 0.065 3.935 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.105 4.105 21 C -0.091 4.091 22 H 0.028 0.972 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.019 0.981 27 H 0.257 0.743 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 9.620 -7.203 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C 0.087 3.913 4 H 0.009 0.991 5 C -0.577 4.577 6 H 0.111 0.889 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.188 1.188 13 N -0.204 5.204 14 C -0.148 4.148 15 C -0.161 4.161 16 C -0.025 4.025 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.143 4.143 21 C -0.129 4.129 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.178 9.211 -7.145 11.859 hybrid contribution 1.620 -0.465 1.146 2.038 sum -0.557 8.746 -5.999 10.620 Atomic orbital electron populations 1.21559 0.97056 0.99505 1.00108 1.21466 0.93875 0.99001 1.00558 1.19282 0.92781 0.91428 0.87838 0.99071 1.22399 0.93471 1.31345 1.10477 0.88920 1.25610 1.01391 0.95252 0.95954 1.69970 1.35983 1.34814 1.14657 0.85821 0.81860 0.77113 0.78539 1.20526 1.21691 1.18788 1.69007 1.38191 1.04863 1.08329 1.24103 0.97968 0.97044 0.95645 1.23155 1.01222 0.95916 0.95767 1.22276 0.94792 0.90248 0.95208 1.22150 0.99818 0.96220 0.97453 1.21595 0.97617 0.94512 1.01657 1.21501 0.95586 0.99672 0.98561 1.21452 0.98887 0.94424 0.99555 1.21319 0.96072 0.95228 1.00250 0.95264 0.93793 0.92935 0.90608 0.96262 0.93357 0.89313 0.92097 0.89032 0.90281 0.95288 0.89838 0.91031 0.92794 0.90457 0.93894 0.90789 0.90944 0.91736 0.94914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 9.80 71.98 0.71 -4.68 16 2 C -0.11 -5.53 5.40 30.59 0.17 -5.37 16 3 C 0.19 9.71 1.50 44.17 0.07 9.77 16 4 H -0.01 -0.49 7.25 -2.39 -0.02 -0.51 16 5 C -0.54 -27.48 5.04 25.60 0.13 -27.35 16 6 H 0.09 4.52 3.00 -2.91 -0.01 4.51 16 7 C 0.02 0.89 5.28 84.65 0.45 1.34 16 8 N -0.91 -51.97 10.88 21.45 0.23 -51.73 16 9 Si 0.94 42.29 29.54 68.60 2.03 44.32 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 13 N -0.48 -20.50 5.58 -861.28 -4.80 -25.30 16 14 C -0.02 -0.73 7.23 83.27 0.60 -0.13 16 15 C -0.12 -3.85 7.13 30.86 0.22 -3.63 16 16 C 0.07 2.37 0.73 0.35 0.00 2.37 16 17 C -0.12 -4.58 3.28 30.58 0.10 -4.48 16 18 C -0.12 -3.45 5.83 30.62 0.18 -3.27 16 19 C -0.12 -3.03 5.87 30.57 0.18 -2.85 16 20 C -0.11 -2.62 5.84 30.63 0.18 -2.44 16 21 C -0.09 -2.91 5.39 30.58 0.16 -2.75 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 2.17 7.75 -2.38 -0.02 2.15 16 25 H 0.08 4.25 5.49 -2.38 -0.01 4.24 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.09 3.78 4.29 -2.38 -0.01 3.77 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.09 2.57 8.10 -2.38 -0.02 2.55 16 31 H 0.08 2.20 7.35 -2.39 -0.02 2.18 16 32 H 0.03 1.33 6.88 -2.39 -0.02 1.31 16 33 H 0.08 3.57 4.22 -2.39 -0.01 3.56 16 34 H 0.07 1.89 7.35 -2.39 -0.02 1.87 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 37 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.64 7.94 -2.39 -0.02 1.63 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 41 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -56.88 294.95 1.58 -55.29 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.99 Total: 20.89 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 3.14 Total: -43.46 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -4.57 Total: -77.03 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -56.88 1.58 -55.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707345790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.509 kcal (2) G-P(sol) polarization free energy of solvation -56.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds