Wall clock time and date at job start Sun Mar 29 2020 21:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99890 * 2 1 4 4 H 1.48508 * 109.47135 * 240.27695 * 3 2 1 5 5 H 1.48503 * 109.47227 * 0.27074 * 3 2 1 6 6 H 1.48492 * 109.47413 * 120.27606 * 3 2 1 7 7 C 1.38809 * 120.00088 * 180.27277 * 2 1 3 8 8 H 1.08000 * 119.99887 * 162.37517 * 7 2 1 9 9 N 1.36943 * 119.99995 * 342.38232 * 7 2 1 10 10 C 1.46921 * 120.62889 * 152.18109 * 9 7 2 11 11 C 1.53627 * 108.54361 * 126.36551 * 10 9 7 12 12 C 1.53045 * 109.23837 * 54.85222 * 11 10 9 13 13 C 1.53003 * 109.44482 * 178.49597 * 12 11 10 14 14 C 1.52995 * 109.47391 * 300.06236 * 13 12 11 15 15 C 1.53003 * 109.47391 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46902 * 59.99733 * 15 14 13 17 17 C 1.52995 * 109.47316 * 300.00313 * 16 15 14 18 18 C 1.53003 * 109.46902 * 180.02562 * 13 12 11 19 19 C 1.53034 * 109.53949 * 298.50923 * 12 11 10 20 20 C 1.46923 * 120.62670 * 332.45308 * 9 7 2 21 21 H 0.97001 * 119.99936 * 359.72950 * 1 2 3 22 22 H 1.08995 * 109.58331 * 246.19503 * 10 9 7 23 23 H 1.09003 * 109.59217 * 6.62530 * 10 9 7 24 24 H 1.09002 * 109.63593 * 294.86313 * 11 10 9 25 25 H 1.09002 * 109.46062 * 174.73794 * 11 10 9 26 26 H 1.08997 * 109.46111 * 58.53694 * 12 11 10 27 27 H 1.09006 * 109.47035 * 60.06390 * 13 12 11 28 28 H 1.08997 * 109.47314 * 299.99830 * 14 13 12 29 29 H 1.09007 * 109.47170 * 60.00153 * 14 13 12 30 30 H 1.09006 * 109.47035 * 300.00154 * 15 14 13 31 31 H 1.08994 * 109.47428 * 180.02562 * 15 14 13 32 32 H 1.08995 * 109.46728 * 180.02562 * 16 15 14 33 33 H 1.08995 * 109.46550 * 60.00634 * 16 15 14 34 34 H 1.09006 * 109.47157 * 299.99907 * 17 16 15 35 35 H 1.08997 * 109.47146 * 179.97438 * 17 16 15 36 36 H 1.08990 * 109.47217 * 300.00089 * 18 13 12 37 37 H 1.08997 * 109.47057 * 60.00627 * 18 13 12 38 38 H 1.09001 * 109.50018 * 301.41540 * 19 12 11 39 39 H 1.08998 * 109.49937 * 181.31873 * 19 12 11 40 40 H 1.08999 * 109.58861 * 353.38088 * 20 9 7 41 41 H 1.08998 * 109.58089 * 113.66351 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.0988 1.6994 -1.2159 5 1 1.2851 2.7465 0.0066 6 1 3.1089 1.6936 1.2090 7 6 2.0102 -1.2021 -0.0057 8 1 3.0522 -1.2227 -0.2890 9 7 1.3737 -2.3620 0.3477 10 6 1.8168 -3.6539 -0.1938 11 6 2.0782 -4.6113 0.9789 12 6 0.8242 -4.6930 1.8524 13 6 1.0666 -5.6743 3.0010 14 6 1.3840 -7.0582 2.4311 15 6 1.6270 -8.0394 3.5796 16 6 0.3735 -8.1227 4.4530 17 6 0.0561 -6.7388 5.0229 18 6 -0.1870 -5.7569 3.8743 19 6 0.5067 -3.3089 2.4228 20 6 0.2310 -2.3373 1.2709 21 1 -0.4850 0.8401 0.0040 22 1 1.0404 -4.0652 -0.8388 23 1 2.7343 -3.5152 -0.7656 24 1 2.9130 -4.2417 1.5744 25 1 2.3175 -5.6020 0.5924 26 1 -0.0159 -5.0391 1.2503 27 1 1.9064 -5.3281 3.6036 28 1 0.5443 -7.4044 1.8286 29 1 2.2774 -6.9989 1.8092 30 1 2.4671 -7.6930 4.1818 31 1 1.8536 -9.0252 3.1736 32 1 0.5468 -8.8213 5.2715 33 1 -0.4663 -8.4691 3.8508 34 1 0.8961 -6.3924 5.6251 35 1 -0.8372 -6.7981 5.6447 36 1 -0.4125 -4.7709 4.2803 37 1 -1.0271 -6.1028 3.2722 38 1 1.3563 -2.9515 3.0047 39 1 -0.3728 -3.3724 3.0635 40 1 0.1020 -1.3295 1.6658 41 1 -0.6724 -2.6411 0.7422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708763359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:57 Heat of formation + Delta-G solvation = -20.284586 kcal Electronic energy + Delta-G solvation = -17804.793951 eV Core-core repulsion = 15297.263571 eV Total energy + Delta-G solvation = -2507.530380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.16285 -36.74934 -33.53164 -31.27325 -30.87213 -29.55828 -28.64710 -25.00651 -23.03039 -22.69899 -21.24776 -20.57471 -19.52528 -18.91630 -16.64289 -15.48845 -14.70288 -14.37889 -14.04448 -13.95377 -13.51247 -13.38343 -12.93816 -12.87123 -12.64614 -12.18714 -11.96361 -11.71643 -11.18732 -11.09030 -11.00435 -10.95458 -10.65131 -10.61183 -10.32287 -10.22367 -10.04624 -10.00761 -9.86478 -9.70791 -9.17417 -9.13471 -8.38796 -6.57972 -5.71678 -3.13100 3.42108 3.47543 3.49202 4.55633 4.77050 4.84033 4.87590 5.26208 5.31524 5.43472 5.51976 5.54371 5.58149 5.63538 5.63653 5.74916 5.82154 5.97534 6.02760 6.07730 6.14768 6.19990 6.25765 6.27763 6.34112 6.39806 6.47798 6.50540 6.62451 6.69237 6.79505 6.88047 6.96171 7.03125 7.13170 7.49419 7.75602 7.85836 8.52835 9.29274 9.93690 10.51014 11.36451 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048693 B = 0.005537 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.894005 B = 5055.251799 C = 5306.494975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.145 3.855 11 C -0.128 4.128 12 C -0.072 4.072 13 C -0.081 4.081 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.135 4.135 20 C 0.170 3.830 21 H 0.253 0.747 22 H 0.015 0.985 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 -13.993 7.873 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.316 5.316 10 C 0.018 3.982 11 C -0.167 4.167 12 C -0.091 4.091 13 C -0.099 4.099 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.174 4.174 20 C 0.045 3.955 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 0.617 -13.833 7.848 15.916 hybrid contribution 0.388 0.872 -0.006 0.954 sum 1.004 -12.961 7.842 15.182 Atomic orbital electron populations 1.70038 1.05246 1.25452 1.54139 1.25009 0.95243 0.98298 1.01196 0.86396 0.78926 0.83518 0.78088 1.20943 1.21668 1.21110 1.19163 0.92728 0.84989 1.41125 0.91874 1.44065 1.36143 1.01410 1.49938 1.20990 0.97219 0.87070 0.92895 1.22167 0.97331 0.98584 0.98586 1.21052 0.97912 0.94958 0.95185 1.21218 0.97462 0.94613 0.96631 1.21639 1.01537 0.94853 0.97224 1.21542 0.97701 0.99021 0.97382 1.21525 0.98147 0.97013 0.98885 1.21551 1.00929 0.95273 0.97906 1.21645 0.98043 0.99121 0.96495 1.22258 0.99852 0.95615 0.99688 1.20765 0.88464 0.98253 0.88048 0.93700 0.96748 0.93165 0.92659 0.93212 0.92283 0.91784 0.92329 0.91749 0.92312 0.92602 0.92710 0.92254 0.92304 0.92554 0.91552 0.92316 0.93014 0.93303 0.89745 0.96752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 11.19 55.49 0.62 -26.21 16 2 C 0.00 0.02 4.90 -17.43 -0.09 -0.06 16 3 Si 0.90 22.10 29.59 -169.99 -5.03 17.07 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 8 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -15.34 2.99 -172.06 -0.51 -15.86 16 10 C 0.14 3.15 6.54 -3.49 -0.02 3.13 16 11 C -0.13 -2.28 5.06 -26.38 -0.13 -2.42 16 12 C -0.07 -1.23 1.74 -90.58 -0.16 -1.39 16 13 C -0.08 -1.12 1.77 -90.62 -0.16 -1.28 16 14 C -0.12 -1.42 4.85 -26.73 -0.13 -1.54 16 15 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 16 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 17 C -0.12 -1.30 5.92 -26.71 -0.16 -1.46 16 18 C -0.12 -1.48 4.86 -26.70 -0.13 -1.61 16 19 C -0.14 -2.64 5.04 -26.61 -0.13 -2.78 16 20 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 21 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.77 6.36 -51.93 -0.33 0.44 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.80 6.40 -51.92 -0.33 0.47 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.89 6.40 -51.93 -0.33 0.56 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.87 6.36 -51.93 -0.33 0.54 16 40 H 0.08 2.32 6.03 -51.93 -0.31 2.01 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 302.19 15.07 4.55 4.55 Total: -1.00 -29.18 302.19 -9.48 -38.66 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.52 Total: -2.99 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.59 Total: -15.23 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.11 Total: -42.06 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.18 -9.48 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708763359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.376 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds