Wall clock time and date at job start Sun Mar 29 2020 21:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99890 * 2 1 4 4 H 1.48508 * 109.47135 * 240.27695 * 3 2 1 5 5 H 1.48503 * 109.47227 * 0.27074 * 3 2 1 6 6 H 1.48492 * 109.47413 * 120.27606 * 3 2 1 7 7 C 1.38809 * 120.00088 * 180.27277 * 2 1 3 8 8 H 1.08000 * 119.99887 * 162.37517 * 7 2 1 9 9 N 1.36943 * 119.99995 * 342.38232 * 7 2 1 10 10 C 1.46921 * 120.62889 * 152.18109 * 9 7 2 11 11 C 1.53627 * 108.54361 * 126.36551 * 10 9 7 12 12 C 1.53045 * 109.23837 * 54.85222 * 11 10 9 13 13 C 1.53003 * 109.44482 * 178.49597 * 12 11 10 14 14 C 1.52995 * 109.47391 * 300.06236 * 13 12 11 15 15 C 1.53003 * 109.47391 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46902 * 59.99733 * 15 14 13 17 17 C 1.52995 * 109.47316 * 300.00313 * 16 15 14 18 18 C 1.53003 * 109.46902 * 180.02562 * 13 12 11 19 19 C 1.53034 * 109.53949 * 298.50923 * 12 11 10 20 20 C 1.46923 * 120.62670 * 332.45308 * 9 7 2 21 21 H 0.97001 * 119.99936 * 359.72950 * 1 2 3 22 22 H 1.08995 * 109.58331 * 246.19503 * 10 9 7 23 23 H 1.09003 * 109.59217 * 6.62530 * 10 9 7 24 24 H 1.09002 * 109.63593 * 294.86313 * 11 10 9 25 25 H 1.09002 * 109.46062 * 174.73794 * 11 10 9 26 26 H 1.08997 * 109.46111 * 58.53694 * 12 11 10 27 27 H 1.09006 * 109.47035 * 60.06390 * 13 12 11 28 28 H 1.08997 * 109.47314 * 299.99830 * 14 13 12 29 29 H 1.09007 * 109.47170 * 60.00153 * 14 13 12 30 30 H 1.09006 * 109.47035 * 300.00154 * 15 14 13 31 31 H 1.08994 * 109.47428 * 180.02562 * 15 14 13 32 32 H 1.08995 * 109.46728 * 180.02562 * 16 15 14 33 33 H 1.08995 * 109.46550 * 60.00634 * 16 15 14 34 34 H 1.09006 * 109.47157 * 299.99907 * 17 16 15 35 35 H 1.08997 * 109.47146 * 179.97438 * 17 16 15 36 36 H 1.08990 * 109.47217 * 300.00089 * 18 13 12 37 37 H 1.08997 * 109.47057 * 60.00627 * 18 13 12 38 38 H 1.09001 * 109.50018 * 301.41540 * 19 12 11 39 39 H 1.08998 * 109.49937 * 181.31873 * 19 12 11 40 40 H 1.08999 * 109.58861 * 353.38088 * 20 9 7 41 41 H 1.08998 * 109.58089 * 113.66351 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.0988 1.6994 -1.2159 5 1 1.2851 2.7465 0.0066 6 1 3.1089 1.6936 1.2090 7 6 2.0102 -1.2021 -0.0057 8 1 3.0522 -1.2227 -0.2890 9 7 1.3737 -2.3620 0.3477 10 6 1.8168 -3.6539 -0.1938 11 6 2.0782 -4.6113 0.9789 12 6 0.8242 -4.6930 1.8524 13 6 1.0666 -5.6743 3.0010 14 6 1.3840 -7.0582 2.4311 15 6 1.6270 -8.0394 3.5796 16 6 0.3735 -8.1227 4.4530 17 6 0.0561 -6.7388 5.0229 18 6 -0.1870 -5.7569 3.8743 19 6 0.5067 -3.3089 2.4228 20 6 0.2310 -2.3373 1.2709 21 1 -0.4850 0.8401 0.0040 22 1 1.0404 -4.0652 -0.8388 23 1 2.7343 -3.5152 -0.7656 24 1 2.9130 -4.2417 1.5744 25 1 2.3175 -5.6020 0.5924 26 1 -0.0159 -5.0391 1.2503 27 1 1.9064 -5.3281 3.6036 28 1 0.5443 -7.4044 1.8286 29 1 2.2774 -6.9989 1.8092 30 1 2.4671 -7.6930 4.1818 31 1 1.8536 -9.0252 3.1736 32 1 0.5468 -8.8213 5.2715 33 1 -0.4663 -8.4691 3.8508 34 1 0.8961 -6.3924 5.6251 35 1 -0.8372 -6.7981 5.6447 36 1 -0.4125 -4.7709 4.2803 37 1 -1.0271 -6.1028 3.2722 38 1 1.3563 -2.9515 3.0047 39 1 -0.3728 -3.3724 3.0635 40 1 0.1020 -1.3295 1.6658 41 1 -0.6724 -2.6411 0.7422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708763359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:57 Heat of formation + Delta-G solvation = -34.706162 kcal Electronic energy + Delta-G solvation = -17805.419318 eV Core-core repulsion = 15297.263571 eV Total energy + Delta-G solvation = -2508.155746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39810 -38.25289 -35.22255 -33.02694 -32.05774 -31.04143 -30.14652 -26.84106 -24.36059 -24.22010 -22.57488 -21.93738 -20.65071 -20.43242 -18.65823 -16.93059 -16.36696 -15.71944 -15.33391 -15.27406 -15.00153 -14.88263 -14.40249 -14.29084 -14.11530 -13.57161 -13.26766 -13.04357 -12.83550 -12.75736 -12.47616 -12.32032 -12.12070 -12.00069 -11.87599 -11.76270 -11.56522 -11.37401 -11.22196 -11.14812 -10.62128 -10.53946 -10.46282 -8.67045 -7.86858 -5.32246 1.45306 1.48094 1.55075 2.51258 3.26452 3.70778 3.78752 3.84258 3.95291 4.12796 4.27567 4.35653 4.49548 4.52439 4.59978 4.63953 4.72732 4.73884 4.81036 4.83303 4.85021 4.96988 5.00664 5.11256 5.14299 5.24961 5.30607 5.34063 5.36728 5.38746 5.40738 5.47375 5.53295 5.56385 5.61448 5.65880 5.71217 5.83655 6.39226 7.15142 7.87821 8.39776 9.18882 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048693 B = 0.005537 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.894005 B = 5055.251799 C = 5306.494975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.612 5.612 10 C 0.138 3.862 11 C -0.115 4.115 12 C -0.067 4.067 13 C -0.072 4.072 14 C -0.113 4.113 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.121 4.121 20 C 0.176 3.824 21 H 0.250 0.750 22 H 0.010 0.990 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.049 0.951 41 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 -15.686 8.874 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.396 4.396 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.013 3.987 11 C -0.154 4.154 12 C -0.085 4.085 13 C -0.090 4.090 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.160 4.160 20 C 0.051 3.949 21 H 0.059 0.941 22 H 0.028 0.972 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 1.561 -15.557 8.850 17.966 hybrid contribution 0.078 1.382 -0.368 1.432 sum 1.639 -14.175 8.482 16.600 Atomic orbital electron populations 1.70200 1.06746 1.25890 1.55433 1.25799 0.96031 1.01532 1.01331 0.85339 0.77598 0.79153 0.78367 1.20012 1.21867 1.20445 1.19512 0.93052 0.86271 1.40764 0.91766 1.44350 1.36218 1.02298 1.50672 1.21180 0.96813 0.86251 0.94489 1.22030 0.97443 0.98896 0.96982 1.20990 0.97259 0.94114 0.96171 1.21102 0.97910 0.94715 0.95320 1.21613 1.01494 0.94024 0.97928 1.21526 0.97978 0.99135 0.96751 1.21530 0.97934 0.96674 0.99321 1.21531 1.01490 0.95210 0.97155 1.21630 0.97348 0.99308 0.97052 1.22063 1.00284 0.95907 0.97732 1.20592 0.87537 0.97642 0.89174 0.94133 0.97234 0.93174 0.93170 0.90090 0.92848 0.92167 0.92314 0.91737 0.92211 0.91200 0.91155 0.92137 0.92244 0.91545 0.92599 0.92442 0.93743 0.91603 0.93246 0.99131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 11.19 21.65 0.24 -57.03 16 2 C -0.05 -2.99 4.90 84.86 0.42 -2.57 16 3 Si 0.97 46.04 29.59 68.60 2.03 48.07 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.27 -15.25 9.59 84.03 0.81 -14.45 16 8 H 0.06 3.59 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -32.30 2.99 -698.27 -2.09 -34.38 16 10 C 0.14 6.01 6.54 86.51 0.57 6.57 16 11 C -0.11 -3.94 5.06 30.82 0.16 -3.79 16 12 C -0.07 -2.20 1.74 -10.77 -0.02 -2.22 16 13 C -0.07 -1.85 1.77 -10.79 -0.02 -1.87 16 14 C -0.11 -2.46 4.85 30.59 0.15 -2.31 16 15 C -0.12 -2.08 5.92 30.60 0.18 -1.89 16 16 C -0.12 -1.98 5.92 30.59 0.18 -1.80 16 17 C -0.12 -2.22 5.92 30.61 0.18 -2.04 16 18 C -0.12 -2.74 4.86 30.61 0.15 -2.59 16 19 C -0.12 -4.74 5.04 30.67 0.15 -4.58 16 20 C 0.18 8.95 5.31 86.36 0.46 9.41 16 21 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 22 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 23 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.08 2.30 6.36 -2.39 -0.02 2.29 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.40 6.40 -2.38 -0.02 1.38 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.42 6.40 -2.39 -0.02 1.41 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 2.33 6.36 -2.39 -0.02 2.32 16 40 H 0.05 2.83 6.03 -2.39 -0.01 2.82 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 Total: -1.00 -63.50 302.19 4.51 -59.00 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.96 Total: 8.48 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 3.36 Total: -24.14 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -1.84 Total: -91.41 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -63.50 4.51 -59.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708763359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.291 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds