Wall clock time and date at job start Sun Mar 29 2020 22:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46757 * 60.00769 * 9 7 5 11 11 H 1.48495 * 109.46824 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47105 * 300.00477 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.34860 * 52.70835 * 16 15 14 18 18 C 1.51109 * 110.38849 * 290.30430 * 16 15 14 19 19 C 1.30526 * 111.10265 * 224.75586 * 18 16 15 20 20 C 1.51100 * 111.10500 * 359.97438 * 19 18 16 21 21 C 1.54624 * 104.72657 * 16.43769 * 20 19 18 22 22 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 23 23 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 27 27 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 28 28 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 30 30 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 32 32 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 35 35 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 36 36 H 1.07996 * 124.44937 * 44.72650 * 18 16 15 37 37 H 1.08002 * 124.44440 * 179.97438 * 19 18 16 38 38 H 1.09004 * 110.38640 * 257.62039 * 20 19 18 39 39 H 1.09002 * 110.48167 * 135.30133 * 20 19 18 40 40 H 1.08997 * 111.03889 * 217.33292 * 21 20 19 41 41 H 1.09003 * 111.06991 * 93.41640 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 1.7443 1.7991 -5.2568 11 1 1.7441 -0.3011 -6.4696 12 1 -0.2358 0.3992 -5.2577 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 1 0.4109 0.1735 4.8282 18 6 2.1666 1.3997 5.0226 19 6 2.5286 1.6295 6.2555 20 6 2.1553 0.4751 7.1562 21 6 1.8701 -0.6995 6.1920 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 -0.7218 -1.2489 29 1 1.6767 -1.7491 -1.2491 30 1 2.8618 -1.8826 -4.7335 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 1.8198 0.9437 2.4401 34 1 1.6586 -1.7220 3.6874 35 1 3.1116 -0.6939 3.6870 36 1 2.3284 2.0819 4.2012 37 1 3.0291 2.5269 6.5881 38 1 1.2633 0.7174 7.7341 39 1 2.9823 0.2279 7.8218 40 1 1.0377 -1.3058 6.5494 41 1 2.7608 -1.3101 6.0440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711664320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:53 Heat of formation + Delta-G solvation = -9.555023 kcal Electronic energy + Delta-G solvation = -16973.360150 eV Core-core repulsion = 14466.295039 eV Total energy + Delta-G solvation = -2507.065111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.09548 -37.36733 -34.15869 -32.17331 -29.54798 -28.83583 -26.88265 -26.29561 -25.20729 -23.34749 -21.94329 -20.62533 -18.63947 -17.84152 -16.25010 -16.18477 -15.82736 -14.71051 -14.65048 -14.07717 -13.63056 -13.26881 -12.64883 -12.54487 -12.36627 -11.99584 -11.96187 -11.91463 -11.59514 -11.34155 -11.09485 -10.91461 -10.88757 -10.77828 -10.67688 -10.44788 -10.20846 -10.09292 -9.64543 -9.03649 -8.95660 -8.79467 -8.29023 -8.02318 -5.93676 -3.93827 2.17162 3.36424 3.40912 3.43214 4.37325 4.50970 4.53096 4.64795 4.95257 5.14645 5.32711 5.41901 5.42721 5.49991 5.58023 5.72740 5.75262 5.80980 5.85188 5.91638 6.00568 6.06838 6.22241 6.30255 6.38089 6.43036 6.55018 6.70075 6.78581 6.82999 6.86191 7.24201 7.27723 7.29827 7.46246 7.71894 7.76091 7.89240 8.06731 8.51298 9.11406 9.68772 11.18001 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.060028 B = 0.004147 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.340141 B = 6750.031278 C = 6893.772285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.069 3.931 14 N -0.687 5.687 15 C 0.067 3.933 16 C -0.068 4.068 17 H 0.090 0.910 18 C -0.152 4.152 19 C -0.178 4.178 20 C -0.099 4.099 21 C -0.121 4.121 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.337 0.663 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 3.760 18.795 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.319 5.319 15 C -0.063 4.063 16 C -0.086 4.086 17 H 0.108 0.892 18 C -0.170 4.170 19 C -0.196 4.196 20 C -0.136 4.136 21 C -0.159 4.159 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.360 3.303 18.657 18.996 hybrid contribution 0.764 0.715 -1.006 1.452 sum -0.596 4.018 17.651 18.112 Atomic orbital electron populations 1.21596 0.95017 1.00558 1.00125 1.20628 0.95858 0.94968 0.94459 1.21768 0.99661 0.96823 1.00364 1.19118 0.95862 0.95199 0.90189 1.21211 1.30768 1.11927 0.90641 0.92346 1.25017 0.95408 0.95128 0.99033 1.69957 1.37280 1.23208 1.23374 0.86725 0.79207 0.79767 0.82695 1.20364 1.21454 1.20303 1.22107 0.96258 0.98122 0.89445 1.60606 1.63632 1.06403 1.01237 1.21937 0.96727 0.98236 0.89375 1.21096 1.00754 0.92514 0.94238 0.89153 1.23349 0.98498 0.97801 0.97401 1.23234 1.01467 0.99415 0.95526 1.21334 1.00987 0.93585 0.97701 1.22503 1.01613 0.97142 0.94627 0.93891 0.92741 0.94199 0.94147 0.91725 0.94861 0.96958 0.96697 0.93123 0.96004 0.91638 0.84393 0.91187 0.95643 0.86059 0.86204 0.90962 0.91517 0.90926 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 2 C -0.06 -1.20 0.60 -154.51 -0.09 -1.29 16 3 C -0.13 -2.44 7.89 37.16 0.29 -2.15 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -14.03 7.65 -34.44 -0.26 -14.29 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.23 4.65 -3.82 -0.02 1.22 16 14 N -0.69 -10.25 5.71 -113.78 -0.65 -10.90 16 15 C 0.07 0.85 5.06 -3.82 -0.02 0.83 16 16 C -0.07 -0.74 3.14 -90.72 -0.28 -1.02 16 17 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.15 -1.64 9.63 -35.69 -0.34 -1.98 16 19 C -0.18 -1.72 10.77 -35.70 -0.38 -2.10 16 20 C -0.10 -0.85 6.81 -26.83 -0.18 -1.03 16 21 C -0.12 -1.11 6.71 -25.03 -0.17 -1.28 16 22 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 23 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 27 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.34 4.84 5.68 -39.29 -0.22 4.62 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.33 8.13 -51.93 -0.42 -0.09 16 36 H 0.12 1.29 7.42 -52.49 -0.39 0.90 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -29.13 318.50 -8.88 -38.01 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.38 Total: 0.59 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -1.37 Total: -22.87 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.09 Total: -37.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.13 -8.88 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711664320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.459 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds