Wall clock time and date at job start Sun Mar 29 2020 22:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46757 * 60.00769 * 9 7 5 11 11 H 1.48495 * 109.46824 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47105 * 300.00477 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.34860 * 52.70835 * 16 15 14 18 18 C 1.51109 * 110.38849 * 290.30430 * 16 15 14 19 19 C 1.30526 * 111.10265 * 224.75586 * 18 16 15 20 20 C 1.51100 * 111.10500 * 359.97438 * 19 18 16 21 21 C 1.54624 * 104.72657 * 16.43769 * 20 19 18 22 22 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 23 23 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 27 27 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 28 28 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 29 29 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 30 30 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 32 32 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 35 35 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 36 36 H 1.07996 * 124.44937 * 44.72650 * 18 16 15 37 37 H 1.08002 * 124.44440 * 179.97438 * 19 18 16 38 38 H 1.09004 * 110.38640 * 257.62039 * 20 19 18 39 39 H 1.09002 * 110.48167 * 135.30133 * 20 19 18 40 40 H 1.08997 * 111.03889 * 217.33292 * 21 20 19 41 41 H 1.09003 * 111.06991 * 93.41640 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 1.7443 1.7991 -5.2568 11 1 1.7441 -0.3011 -6.4696 12 1 -0.2358 0.3992 -5.2577 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 1 0.4109 0.1735 4.8282 18 6 2.1666 1.3997 5.0226 19 6 2.5286 1.6295 6.2555 20 6 2.1553 0.4751 7.1562 21 6 1.8701 -0.6995 6.1920 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 3.1300 -0.7218 -1.2489 29 1 1.6767 -1.7491 -1.2491 30 1 2.8618 -1.8826 -4.7335 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2494 33 1 1.8198 0.9437 2.4401 34 1 1.6586 -1.7220 3.6874 35 1 3.1116 -0.6939 3.6870 36 1 2.3284 2.0819 4.2012 37 1 3.0291 2.5269 6.5881 38 1 1.2633 0.7174 7.7341 39 1 2.9823 0.2279 7.8218 40 1 1.0377 -1.3058 6.5494 41 1 2.7608 -1.3101 6.0440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711664320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:53 Heat of formation + Delta-G solvation = -25.393016 kcal Electronic energy + Delta-G solvation = -16974.046937 eV Core-core repulsion = 14466.295039 eV Total energy + Delta-G solvation = -2507.751898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.99890 -38.85099 -35.63010 -34.13842 -30.57517 -29.69961 -28.80689 -27.89891 -26.66513 -24.85197 -23.45306 -21.41037 -19.52621 -19.39997 -18.33135 -17.12747 -16.89506 -16.57277 -15.72420 -15.54280 -15.12463 -14.76043 -14.20925 -13.95294 -13.79256 -13.61810 -13.02115 -12.74429 -12.74067 -12.72175 -12.64415 -12.43222 -12.25055 -12.17150 -12.05771 -12.01243 -11.75726 -11.62173 -11.37014 -10.86086 -10.70879 -10.49912 -9.76300 -9.28467 -8.13692 -6.21090 1.41035 1.41181 1.43665 1.50936 2.44112 3.19974 3.28702 3.75138 3.82711 4.08310 4.17099 4.23229 4.37394 4.38061 4.49003 4.62173 4.66296 4.77577 4.81903 4.85223 4.95229 5.01968 5.03096 5.07371 5.10798 5.20123 5.21215 5.28109 5.44186 5.51117 5.53391 5.58077 5.65069 5.67356 5.87002 5.92511 6.01966 6.12852 6.37174 6.55093 6.93801 7.46260 8.98577 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.060028 B = 0.004147 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.340141 B = 6750.031278 C = 6893.772285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.081 3.919 14 N -0.682 5.682 15 C 0.069 3.931 16 C -0.062 4.062 17 H 0.084 0.916 18 C -0.177 4.177 19 C -0.170 4.170 20 C -0.100 4.100 21 C -0.120 4.120 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.066 0.934 28 H -0.017 1.017 29 H -0.016 1.016 30 H 0.260 0.740 31 H 0.014 0.986 32 H 0.056 0.944 33 H 0.342 0.658 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 5.188 20.234 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.048 4.048 14 N -0.314 5.314 15 C -0.061 4.061 16 C -0.081 4.081 17 H 0.102 0.898 18 C -0.195 4.195 19 C -0.188 4.188 20 C -0.137 4.137 21 C -0.158 4.158 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.137 0.863 37 H 0.151 0.849 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.084 4.747 20.117 20.774 hybrid contribution 1.012 0.247 -1.382 1.731 sum -1.071 4.993 18.735 19.419 Atomic orbital electron populations 1.21498 0.94232 1.00105 1.00532 1.20503 0.96371 0.95606 0.93164 1.21683 0.99398 0.95657 1.01201 1.19003 0.93896 0.94104 0.92753 1.21598 1.30334 1.12016 0.91453 0.91551 1.25937 0.95664 0.95903 1.02615 1.70105 1.38819 1.24953 1.24122 0.85617 0.78946 0.78793 0.78409 1.19218 1.21335 1.19295 1.21822 0.95643 0.97586 0.89769 1.60554 1.63439 1.06607 1.00844 1.21984 0.96603 0.98334 0.89145 1.21032 1.00263 0.92810 0.93988 0.89805 1.23381 1.00070 0.97960 0.98045 1.23508 1.00026 0.99976 0.95299 1.21387 1.01916 0.92764 0.97593 1.22523 1.02014 0.97426 0.93811 0.91405 0.94201 0.95111 0.94550 0.93318 0.91488 0.99877 0.99803 0.93142 0.96757 0.92571 0.83777 0.91354 0.95910 0.86280 0.84882 0.89928 0.90303 0.89870 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 2 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16 3 C -0.12 -4.50 7.89 71.98 0.57 -3.93 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.52 -28.94 7.65 25.60 0.20 -28.75 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.54 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 9 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.08 2.88 4.65 86.30 0.40 3.28 16 14 N -0.68 -19.43 5.71 -513.88 -2.94 -22.36 16 15 C 0.07 1.67 5.06 86.30 0.44 2.10 16 16 C -0.06 -1.26 3.14 -10.86 -0.03 -1.29 16 17 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 18 C -0.18 -3.45 9.63 26.26 0.25 -3.20 16 19 C -0.17 -2.85 10.77 26.26 0.28 -2.57 16 20 C -0.10 -1.43 6.81 30.53 0.21 -1.23 16 21 C -0.12 -1.94 6.71 31.70 0.21 -1.73 16 22 H 0.07 2.28 7.60 -2.39 -0.02 2.27 16 23 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 24 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 27 H 0.07 2.00 6.57 -2.39 -0.02 1.99 16 28 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 29 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.34 9.16 5.68 -89.69 -0.51 8.65 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.02 0.57 8.13 -2.39 -0.02 0.55 16 36 H 0.12 2.33 7.42 -2.91 -0.02 2.31 16 37 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.15 7.91 -2.39 -0.02 1.13 16 Total: -1.00 -62.85 318.50 3.49 -59.36 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.46 Total: 14.70 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 3.66 Total: -40.73 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.65 Total: -80.14 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.85 3.49 -59.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711664320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.964 kcal (2) G-P(sol) polarization free energy of solvation -62.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds