Wall clock time and date at job start Sun Mar 29 2020 22:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 5 5 C 1.50699 * 109.46866 * 299.99792 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47141 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47494 * 119.99680 * 9 7 5 12 12 H 1.48505 * 109.47047 * 239.99860 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 14 14 N 1.46906 * 109.46897 * 60.00033 * 13 2 1 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 2 16 16 C 1.53007 * 109.46764 * 180.02562 * 15 14 13 17 17 H 1.08998 * 110.34412 * 307.28778 * 16 15 14 18 18 C 1.51104 * 110.38807 * 69.69789 * 16 15 14 19 19 C 1.30521 * 111.10328 * 135.24470 * 18 16 15 20 20 C 1.51103 * 111.10622 * 0.02562 * 19 18 16 21 21 C 1.54635 * 104.72604 * 343.56304 * 20 19 18 22 22 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 23 23 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 24 24 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 27 27 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 30 30 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 13 2 1 33 33 H 1.00896 * 111.00031 * 56.04700 * 14 13 2 34 34 H 1.08997 * 109.47334 * 299.99788 * 15 14 13 35 35 H 1.09004 * 109.47141 * 60.00372 * 15 14 13 36 36 H 1.08001 * 124.44706 * 315.22754 * 18 16 15 37 37 H 1.08004 * 124.44901 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.38561 * 224.74558 * 20 19 18 39 39 H 1.08999 * 110.48166 * 102.42364 * 20 19 18 40 40 H 1.09001 * 111.03226 * 266.60125 * 21 20 19 41 41 H 1.08997 * 111.07275 * 142.68073 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8675 2.3806 7 6 1.8711 -0.4815 3.7320 8 7 2.6272 -1.5509 3.8527 9 14 1.2479 0.3986 5.2572 10 1 0.4225 1.5651 4.8530 11 1 0.4236 -0.5353 6.0656 12 1 2.4027 0.8662 6.0654 13 6 2.0400 -0.7213 -1.2492 14 7 1.5503 -0.0288 -2.4487 15 6 2.0209 -0.6954 -3.6702 16 6 1.4923 0.0533 -4.8955 17 1 0.4112 0.1747 -4.8281 18 6 2.1687 1.3985 -5.0227 19 6 2.5309 1.6276 -6.2556 20 6 2.1559 0.4738 -7.1563 21 6 1.8690 -0.7005 -6.1919 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7489 1.2492 29 1 3.1300 -0.7217 1.2490 30 1 2.8615 -1.8822 4.7337 31 1 3.1300 -0.7217 -1.2490 32 1 1.6766 -1.7490 -1.2492 33 1 1.8198 0.9435 -2.4402 34 1 3.1107 -0.6955 -3.6873 35 1 1.6570 -1.7227 -3.6868 36 1 2.3308 2.0808 -4.2015 37 1 3.0327 2.5243 -6.5883 38 1 2.9839 0.2261 -7.8206 39 1 1.2649 0.7160 -7.7354 40 1 2.7593 -1.3118 -6.0441 41 1 1.0360 -1.3061 -6.5488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711664332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:55 Heat of formation + Delta-G solvation = -25.491032 kcal Electronic energy + Delta-G solvation = -16974.283085 eV Core-core repulsion = 14466.526937 eV Total energy + Delta-G solvation = -2507.756148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99802 -38.85036 -35.63014 -34.13865 -30.57450 -29.69951 -28.80802 -27.89803 -26.66610 -24.85426 -23.45395 -21.41035 -19.52663 -19.39947 -18.33764 -17.12764 -16.89560 -16.56970 -15.72095 -15.53901 -15.12949 -14.76282 -14.20951 -13.96434 -13.79103 -13.61796 -13.03371 -12.76176 -12.74188 -12.69833 -12.64439 -12.43297 -12.26023 -12.17836 -12.05775 -11.99150 -11.73205 -11.62246 -11.37278 -10.85875 -10.70010 -10.51269 -9.76317 -9.28303 -8.14136 -6.21265 1.40340 1.41076 1.41258 1.53640 2.43855 3.19775 3.28743 3.75200 3.82670 4.08329 4.17147 4.23283 4.37451 4.38149 4.49090 4.62192 4.66276 4.77697 4.81957 4.85286 4.95323 5.01952 5.03196 5.07444 5.10780 5.20194 5.21342 5.28150 5.44226 5.51297 5.53579 5.58176 5.65158 5.67391 5.87003 5.92674 6.01988 6.12943 6.37198 6.55282 6.94071 7.46174 8.98567 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.060031 B = 0.004147 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.316488 B = 6750.211635 C = 6893.666231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.081 3.919 14 N -0.682 5.682 15 C 0.069 3.931 16 C -0.062 4.062 17 H 0.084 0.916 18 C -0.176 4.176 19 C -0.170 4.170 20 C -0.100 4.100 21 C -0.120 4.120 22 H 0.039 0.961 23 H 0.067 0.933 24 H 0.030 0.970 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.048 0.952 28 H -0.016 1.016 29 H -0.017 1.017 30 H 0.260 0.740 31 H 0.014 0.986 32 H 0.056 0.944 33 H 0.342 0.658 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 5.189 -20.269 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.048 4.048 14 N -0.315 5.315 15 C -0.061 4.061 16 C -0.081 4.081 17 H 0.102 0.898 18 C -0.195 4.195 19 C -0.188 4.188 20 C -0.137 4.137 21 C -0.158 4.158 22 H 0.058 0.942 23 H 0.086 0.914 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.002 0.998 29 H 0.001 0.999 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.151 0.849 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.099 4.754 -20.157 20.816 hybrid contribution 1.027 0.229 1.396 1.748 sum -1.072 4.984 -18.761 19.441 Atomic orbital electron populations 1.21497 0.94234 1.00111 1.00528 1.20503 0.96373 0.95605 0.93164 1.21684 0.99408 0.95657 1.01194 1.19015 0.93915 0.94123 0.92774 1.21654 1.30139 1.11921 0.91425 0.91539 1.25938 0.95705 0.95925 1.02629 1.70120 1.38932 1.24985 1.23984 0.85505 0.78127 0.78808 0.79276 1.18412 1.20820 1.20791 1.21820 0.95646 0.97584 0.89765 1.60539 1.63467 1.06602 1.00842 1.21984 0.96608 0.98322 0.89138 1.21034 1.00261 0.92813 0.93990 0.89805 1.23379 1.00060 0.97965 0.98047 1.23508 1.00028 0.99977 0.95300 1.21388 1.01903 0.92777 0.97593 1.22525 1.02013 0.97423 0.93815 0.94217 0.91408 0.95088 0.94531 0.91499 0.93328 0.99777 0.99857 0.93163 0.96756 0.92578 0.83770 0.95922 0.91345 0.86279 0.84881 0.90321 0.89913 0.91163 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 2 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16 3 C -0.12 -4.50 7.89 71.98 0.57 -3.93 16 4 C 0.04 2.08 4.04 29.85 0.12 2.20 16 5 C -0.51 -28.77 7.65 25.60 0.20 -28.58 16 6 H 0.07 3.57 5.68 -2.91 -0.02 3.56 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.08 2.88 4.65 86.30 0.40 3.28 16 14 N -0.68 -19.41 5.71 -513.87 -2.94 -22.35 16 15 C 0.07 1.67 5.07 86.31 0.44 2.10 16 16 C -0.06 -1.26 3.14 -10.86 -0.03 -1.29 16 17 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 18 C -0.18 -3.45 9.63 26.27 0.25 -3.20 16 19 C -0.17 -2.85 10.77 26.27 0.28 -2.57 16 20 C -0.10 -1.43 6.81 30.53 0.21 -1.23 16 21 C -0.12 -1.94 6.71 31.70 0.21 -1.72 16 22 H 0.04 1.63 6.62 -2.39 -0.02 1.62 16 23 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 2.00 6.57 -2.39 -0.02 1.98 16 27 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 28 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.34 9.15 5.68 -89.70 -0.51 8.64 16 34 H 0.02 0.57 8.13 -2.39 -0.02 0.55 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.12 2.33 7.43 -2.91 -0.02 2.31 16 37 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.15 7.91 -2.39 -0.02 1.13 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -62.88 318.50 3.49 -59.39 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.46 Total: 14.45 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.66 Total: -40.64 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.65 Total: -80.06 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.88 3.49 -59.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711664332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.895 kcal (2) G-P(sol) polarization free energy of solvation -62.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds