Wall clock time and date at job start Sun Mar 29 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 H 1.09002 * 115.55976 * 29.31588 * 3 2 1 5 5 C 1.52998 * 117.50159 * 243.62248 * 3 2 1 6 6 C 1.52999 * 117.49758 * 174.99803 * 3 2 1 7 7 H 1.09000 * 117.50020 * 359.97438 * 6 3 2 8 8 C 1.53004 * 117.49906 * 214.98473 * 6 3 2 9 9 N 1.46903 * 109.47161 * 175.00492 * 8 6 3 10 10 C 1.46845 * 111.00314 * 66.04371 * 9 8 6 11 11 C 1.53038 * 109.52402 * 174.16101 * 10 9 8 12 12 C 1.53126 * 109.27454 * 59.18091 * 11 10 9 13 13 C 1.53116 * 109.16104 * 302.34100 * 12 11 10 14 14 H 1.08996 * 109.50806 * 297.68176 * 13 12 11 15 15 C 1.50701 * 109.50439 * 177.59914 * 13 12 11 16 16 H 1.08000 * 119.99661 * 245.43414 * 15 13 12 17 17 C 1.37873 * 120.00106 * 65.43289 * 15 13 12 18 18 N 1.31519 * 119.99768 * 5.15176 * 17 15 13 19 19 Si 1.86798 * 120.00199 * 185.14886 * 17 15 13 20 20 H 1.48500 * 109.46914 * 84.99927 * 19 17 15 21 21 H 1.48505 * 109.46745 * 324.99831 * 19 17 15 22 22 H 1.48501 * 109.47094 * 205.00440 * 19 17 15 23 23 C 1.46850 * 110.99049 * 301.79232 * 9 8 6 24 24 H 1.08999 * 109.46877 * 300.00092 * 1 2 3 25 25 H 1.09002 * 109.47148 * 59.99575 * 1 2 3 26 26 H 1.08998 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47162 * 240.00616 * 2 1 3 28 28 H 1.09002 * 109.47148 * 120.00425 * 2 1 3 29 29 H 1.09002 * 117.49975 * 145.02763 * 5 3 2 30 30 H 1.09001 * 117.49640 * 359.97438 * 5 3 2 31 31 H 1.08989 * 109.47486 * 54.99890 * 8 6 3 32 32 H 1.09002 * 109.46824 * 294.99703 * 8 6 3 33 33 H 1.09001 * 109.46238 * 54.14400 * 10 9 8 34 34 H 1.09007 * 109.46277 * 294.17611 * 10 9 8 35 35 H 1.08991 * 109.50219 * 299.23849 * 11 10 9 36 36 H 1.08999 * 109.50095 * 179.11811 * 11 10 9 37 37 H 1.09001 * 109.51858 * 182.44208 * 12 11 10 38 38 H 1.08998 * 109.52458 * 62.25169 * 12 11 10 39 39 H 0.96997 * 120.00115 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.43331 * 65.81000 * 23 9 8 41 41 H 1.09002 * 109.49823 * 305.83613 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6578 0.1183 7 1 4.1802 0.7719 0.1966 8 6 4.0301 2.8803 0.9034 9 7 5.4951 2.8510 1.0076 10 6 6.1200 3.0153 -0.3110 11 6 7.6376 3.1258 -0.1477 12 6 8.1660 1.8607 0.5343 13 6 7.4642 1.6868 1.8839 14 1 7.6997 2.5336 2.5284 15 6 7.9354 0.4123 2.5355 16 1 7.2437 -0.4024 2.6912 17 6 9.2496 0.2862 2.9329 18 7 10.0670 1.3121 2.8367 19 14 9.8693 -1.3415 3.6081 20 1 10.2738 -2.2222 2.4830 21 1 8.7885 -1.9979 4.3868 22 1 11.0380 -1.0983 4.4914 23 6 5.9514 1.6184 1.6626 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 2.7213 2.9428 -1.5342 30 1 3.0099 1.1858 -2.0155 31 1 3.5943 2.8646 1.9023 32 1 3.7207 3.7885 0.3862 33 1 5.7386 3.9206 -0.7834 34 1 5.8837 2.1532 -0.9349 35 1 7.8752 3.9956 0.4646 36 1 8.1023 3.2320 -1.1279 37 1 9.2406 1.9537 0.6918 38 1 7.9629 0.9951 -0.0962 39 1 10.9916 1.2234 3.1159 40 1 5.7153 0.7628 1.0299 41 1 5.4483 1.5092 2.6234 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723124395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:51 Heat of formation + Delta-G solvation = 1.083447 kcal Electronic energy + Delta-G solvation = -17398.990589 eV Core-core repulsion = 14892.386797 eV Total energy + Delta-G solvation = -2506.603792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.02574 -37.12939 -33.68985 -32.27931 -31.20522 -29.80604 -26.18815 -24.88536 -23.83780 -22.48823 -21.26903 -20.48115 -20.34525 -18.22555 -16.40031 -15.40529 -14.93078 -14.56282 -14.40821 -14.26631 -13.92630 -13.27409 -13.00625 -12.58322 -12.32326 -12.19191 -12.09780 -11.71587 -11.55791 -11.34284 -11.21409 -11.04287 -10.90659 -10.67678 -10.64308 -10.11275 -9.89432 -9.79473 -9.56898 -9.35813 -8.94955 -8.68864 -8.27330 -7.55058 -5.95766 -3.99050 3.33368 3.39764 3.42302 3.83141 4.44434 4.59536 4.69483 4.91956 5.03580 5.14474 5.30027 5.36257 5.39860 5.55641 5.69219 5.75259 5.84791 5.85737 5.89001 5.91312 6.00671 6.07439 6.08731 6.15487 6.28548 6.32976 6.43294 6.52978 6.59767 6.75121 6.79859 7.02069 7.24519 7.39923 7.72889 7.79388 7.88452 8.08013 8.17180 8.52302 9.05821 9.64454 11.12896 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026101 B = 0.005974 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.509314 B = 4685.484532 C = 5464.707193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.148 4.148 4 H 0.101 0.899 5 C -0.176 4.176 6 C -0.182 4.182 7 H 0.109 0.891 8 C 0.086 3.914 9 N -0.534 5.534 10 C 0.065 3.935 11 C -0.119 4.119 12 C -0.105 4.105 13 C 0.053 3.947 14 H 0.039 0.961 15 C -0.515 4.515 16 H 0.052 0.948 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.275 1.275 22 H -0.287 1.287 23 C 0.067 3.933 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.259 0.741 40 H 0.022 0.978 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 1.245 -6.946 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.167 4.167 4 H 0.119 0.881 5 C -0.213 4.213 6 C -0.202 4.202 7 H 0.127 0.873 8 C -0.043 4.043 9 N -0.256 5.256 10 C -0.063 4.063 11 C -0.157 4.157 12 C -0.143 4.143 13 C 0.034 3.966 14 H 0.057 0.943 15 C -0.554 4.554 16 H 0.071 0.929 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.200 1.200 22 H -0.213 1.213 23 C -0.060 4.060 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.522 1.707 -6.604 15.145 hybrid contribution 0.167 -1.628 -0.241 1.654 sum -13.356 0.080 -6.845 15.008 Atomic orbital electron populations 1.21735 0.95738 1.01309 1.01684 1.21115 0.95629 0.94525 1.01972 1.22386 0.93997 0.97664 1.02673 0.88077 1.23129 1.04862 1.01711 0.91549 1.23386 0.94511 1.02572 0.99683 0.87284 1.21813 0.89125 0.94353 0.98977 1.62249 1.03982 1.38964 1.20447 1.21966 0.95774 0.98851 0.89664 1.21684 0.93621 1.01026 0.99348 1.21587 1.02435 0.93115 0.97208 1.18683 0.87333 0.97505 0.93105 0.94275 1.21121 0.94918 1.00272 1.39044 0.92948 1.24929 0.97077 0.96153 0.95565 1.69951 1.05382 1.29300 1.48003 0.86691 0.78425 0.84474 0.78874 1.20724 1.20037 1.21310 1.22321 0.99606 0.87638 0.96422 0.92743 0.92849 0.92941 0.92137 0.91610 0.89216 0.89424 0.90881 0.91614 0.92700 0.95581 0.92072 0.93643 0.90600 0.95088 0.93086 0.96022 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.87 37.16 0.37 -0.97 16 2 C -0.09 -1.03 6.22 -26.73 -0.17 -1.20 16 3 C -0.15 -1.74 5.46 -90.62 -0.49 -2.24 16 4 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 5 C -0.18 -2.11 9.82 -26.73 -0.26 -2.38 16 6 C -0.18 -2.56 4.24 -90.62 -0.38 -2.95 16 7 H 0.11 1.79 6.00 -51.93 -0.31 1.48 16 8 C 0.09 1.31 5.64 -3.82 -0.02 1.29 16 9 N -0.53 -10.00 4.86 -234.66 -1.14 -11.14 16 10 C 0.07 1.17 5.15 -3.83 -0.02 1.15 16 11 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 12 C -0.11 -2.50 5.09 -26.61 -0.14 -2.64 16 13 C 0.05 1.33 2.13 -91.69 -0.20 1.14 16 14 H 0.04 1.11 8.12 -51.93 -0.42 0.69 16 15 C -0.51 -14.25 8.49 -34.44 -0.29 -14.54 16 16 H 0.05 1.43 7.75 -52.49 -0.41 1.03 16 17 C 0.06 1.80 5.28 -17.82 -0.09 1.70 16 18 N -0.89 -25.75 11.97 55.43 0.66 -25.08 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.07 1.44 4.24 -3.83 -0.02 1.42 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 30 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 31 H 0.07 1.10 8.14 -51.94 -0.42 0.68 16 32 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 33 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.03 0.47 7.47 -51.93 -0.39 0.08 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 2.01 6.79 -51.93 -0.35 1.66 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.02 0.47 6.19 -51.93 -0.32 0.15 16 41 H 0.06 1.27 8.12 -51.93 -0.42 0.84 16 LS Contribution 317.19 15.07 4.78 4.78 Total: -1.00 -28.03 317.19 -10.22 -38.25 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.63 Total: -0.49 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.88 Total: -22.73 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.48 Total: -36.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.03 -10.22 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723124395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.334 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds