Wall clock time and date at job start Sun Mar 29 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 H 1.09002 * 115.55976 * 29.31588 * 3 2 1 5 5 C 1.52998 * 117.50159 * 243.62248 * 3 2 1 6 6 C 1.52999 * 117.49758 * 174.99803 * 3 2 1 7 7 H 1.09000 * 117.50020 * 359.97438 * 6 3 2 8 8 C 1.53004 * 117.49906 * 214.98473 * 6 3 2 9 9 N 1.46903 * 109.47161 * 175.00492 * 8 6 3 10 10 C 1.46845 * 111.00314 * 66.04371 * 9 8 6 11 11 C 1.53038 * 109.52402 * 174.16101 * 10 9 8 12 12 C 1.53126 * 109.27454 * 59.18091 * 11 10 9 13 13 C 1.53116 * 109.16104 * 302.34100 * 12 11 10 14 14 H 1.08996 * 109.50806 * 297.68176 * 13 12 11 15 15 C 1.50701 * 109.50439 * 177.59914 * 13 12 11 16 16 H 1.08000 * 119.99661 * 245.43414 * 15 13 12 17 17 C 1.37873 * 120.00106 * 65.43289 * 15 13 12 18 18 N 1.31519 * 119.99768 * 5.15176 * 17 15 13 19 19 Si 1.86798 * 120.00199 * 185.14886 * 17 15 13 20 20 H 1.48500 * 109.46914 * 84.99927 * 19 17 15 21 21 H 1.48505 * 109.46745 * 324.99831 * 19 17 15 22 22 H 1.48501 * 109.47094 * 205.00440 * 19 17 15 23 23 C 1.46850 * 110.99049 * 301.79232 * 9 8 6 24 24 H 1.08999 * 109.46877 * 300.00092 * 1 2 3 25 25 H 1.09002 * 109.47148 * 59.99575 * 1 2 3 26 26 H 1.08998 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47162 * 240.00616 * 2 1 3 28 28 H 1.09002 * 109.47148 * 120.00425 * 2 1 3 29 29 H 1.09002 * 117.49975 * 145.02763 * 5 3 2 30 30 H 1.09001 * 117.49640 * 359.97438 * 5 3 2 31 31 H 1.08989 * 109.47486 * 54.99890 * 8 6 3 32 32 H 1.09002 * 109.46824 * 294.99703 * 8 6 3 33 33 H 1.09001 * 109.46238 * 54.14400 * 10 9 8 34 34 H 1.09007 * 109.46277 * 294.17611 * 10 9 8 35 35 H 1.08991 * 109.50219 * 299.23849 * 11 10 9 36 36 H 1.08999 * 109.50095 * 179.11811 * 11 10 9 37 37 H 1.09001 * 109.51858 * 182.44208 * 12 11 10 38 38 H 1.08998 * 109.52458 * 62.25169 * 12 11 10 39 39 H 0.96997 * 120.00115 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.43331 * 65.81000 * 23 9 8 41 41 H 1.09002 * 109.49823 * 305.83613 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6578 0.1183 7 1 4.1802 0.7719 0.1966 8 6 4.0301 2.8803 0.9034 9 7 5.4951 2.8510 1.0076 10 6 6.1200 3.0153 -0.3110 11 6 7.6376 3.1258 -0.1477 12 6 8.1660 1.8607 0.5343 13 6 7.4642 1.6868 1.8839 14 1 7.6997 2.5336 2.5284 15 6 7.9354 0.4123 2.5355 16 1 7.2437 -0.4024 2.6912 17 6 9.2496 0.2862 2.9329 18 7 10.0670 1.3121 2.8367 19 14 9.8693 -1.3415 3.6081 20 1 10.2738 -2.2222 2.4830 21 1 8.7885 -1.9979 4.3868 22 1 11.0380 -1.0983 4.4914 23 6 5.9514 1.6184 1.6626 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 2.7213 2.9428 -1.5342 30 1 3.0099 1.1858 -2.0155 31 1 3.5943 2.8646 1.9023 32 1 3.7207 3.7885 0.3862 33 1 5.7386 3.9206 -0.7834 34 1 5.8837 2.1532 -0.9349 35 1 7.8752 3.9956 0.4646 36 1 8.1023 3.2320 -1.1279 37 1 9.2406 1.9537 0.6918 38 1 7.9629 0.9951 -0.0962 39 1 10.9916 1.2234 3.1159 40 1 5.7153 0.7628 1.0299 41 1 5.4483 1.5092 2.6234 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723124395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:51 Heat of formation + Delta-G solvation = -13.802428 kcal Electronic energy + Delta-G solvation = -17399.636089 eV Core-core repulsion = 14892.386797 eV Total energy + Delta-G solvation = -2507.249292 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37244 -38.43563 -35.46314 -33.75070 -32.45581 -31.66308 -27.55561 -26.90176 -24.68961 -23.98942 -23.01850 -21.73603 -21.37795 -19.86835 -18.44572 -16.93332 -16.37326 -15.88726 -15.81978 -15.58446 -15.12009 -14.89676 -14.46802 -14.05557 -14.02619 -13.60939 -13.26019 -12.93498 -12.90206 -12.81948 -12.58190 -12.56322 -12.41955 -12.10560 -11.89462 -11.85619 -11.67581 -11.40311 -10.87827 -10.78783 -10.66372 -10.52788 -10.39847 -9.02875 -8.10831 -6.21777 1.40563 1.40863 1.50699 2.42683 2.83609 3.18873 3.23275 3.66345 3.94375 4.05445 4.22646 4.27905 4.30642 4.35427 4.44166 4.50208 4.56875 4.66763 4.71454 4.84311 4.85219 4.92374 4.94046 4.96573 5.01416 5.13477 5.15632 5.17567 5.23323 5.27768 5.35994 5.40986 5.48685 5.52620 5.63077 5.96396 6.08128 6.19576 6.41977 6.48225 6.91654 7.45506 8.97211 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026101 B = 0.005974 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.509314 B = 4685.484532 C = 5464.707193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.135 4.135 4 H 0.113 0.887 5 C -0.162 4.162 6 C -0.201 4.201 7 H 0.082 0.918 8 C 0.090 3.910 9 N -0.546 5.546 10 C 0.072 3.928 11 C -0.113 4.113 12 C -0.098 4.098 13 C 0.050 3.950 14 H -0.002 1.002 15 C -0.536 4.536 16 H 0.049 0.951 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.952 3.048 20 H -0.274 1.274 21 H -0.269 1.269 22 H -0.283 1.283 23 C 0.085 3.915 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.028 0.972 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.026 0.974 39 H 0.260 0.740 40 H 0.020 0.980 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 1.227 -8.081 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.154 4.154 4 H 0.131 0.869 5 C -0.199 4.199 6 C -0.221 4.221 7 H 0.100 0.900 8 C -0.038 4.038 9 N -0.269 5.269 10 C -0.056 4.056 11 C -0.151 4.151 12 C -0.136 4.136 13 C 0.031 3.969 14 H 0.017 0.983 15 C -0.575 4.575 16 H 0.068 0.932 17 C -0.184 4.184 18 N -0.557 5.557 19 Si 0.777 3.223 20 H -0.200 1.200 21 H -0.193 1.193 22 H -0.209 1.209 23 C -0.043 4.043 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.321 1.691 -7.746 17.251 hybrid contribution 0.707 -1.601 0.119 1.754 sum -14.615 0.090 -7.627 16.485 Atomic orbital electron populations 1.21703 0.94089 1.02027 1.02234 1.21142 0.97070 0.93939 1.01366 1.22478 0.92369 0.98391 1.02175 0.86864 1.23200 1.03230 1.02686 0.90815 1.23124 0.95922 1.01131 1.01925 0.90028 1.21835 0.86539 0.95852 0.99565 1.62166 1.06518 1.37107 1.21132 1.21943 0.93991 1.00378 0.89305 1.21614 0.95559 0.98075 0.99853 1.21396 1.00282 0.95159 0.96768 1.18611 0.90314 0.94947 0.93006 0.98349 1.21491 0.95335 1.01147 1.39478 0.93231 1.25713 0.97250 0.99491 0.95903 1.70084 1.05588 1.31220 1.48787 0.85668 0.77914 0.80306 0.78369 1.20016 1.19323 1.20855 1.21926 0.96738 0.89158 0.96436 0.92361 0.92090 0.92232 0.92309 0.92768 0.87702 0.89165 0.91084 0.89397 0.89569 0.95356 0.93186 0.91139 0.93979 0.95555 0.93063 0.96215 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.87 71.98 0.71 -1.54 16 2 C -0.10 -1.96 6.22 30.59 0.19 -1.77 16 3 C -0.14 -2.85 5.46 -10.79 -0.06 -2.91 16 4 H 0.11 2.14 8.08 -2.39 -0.02 2.12 16 5 C -0.16 -3.43 9.82 30.59 0.30 -3.13 16 6 C -0.20 -5.35 4.24 -10.79 -0.05 -5.39 16 7 H 0.08 2.65 6.00 -2.39 -0.01 2.64 16 8 C 0.09 2.57 5.64 86.30 0.49 3.05 16 9 N -0.55 -20.01 4.86 -896.33 -4.35 -24.36 16 10 C 0.07 2.42 5.15 86.33 0.44 2.86 16 11 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 12 C -0.10 -4.77 5.09 30.68 0.16 -4.62 16 13 C 0.05 2.63 2.13 -11.49 -0.02 2.61 16 14 H 0.00 -0.10 8.12 -2.39 -0.02 -0.12 16 15 C -0.54 -30.54 8.49 25.60 0.22 -30.33 16 16 H 0.05 2.77 7.75 -2.91 -0.02 2.75 16 17 C 0.02 0.87 5.28 84.65 0.45 1.32 16 18 N -0.92 -54.81 11.97 21.45 0.26 -54.55 16 19 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 C 0.09 3.72 4.24 86.33 0.37 4.08 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 1.19 7.87 -2.39 -0.02 1.17 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.93 8.03 -2.39 -0.02 1.91 16 30 H 0.09 1.87 8.03 -2.39 -0.02 1.85 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 2.13 7.79 -2.39 -0.02 2.12 16 33 H 0.09 2.43 8.06 -2.39 -0.02 2.41 16 34 H 0.03 0.96 7.47 -2.38 -0.02 0.94 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.04 2.31 6.79 -2.39 -0.02 2.29 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.02 0.87 6.19 -2.39 -0.01 0.85 16 41 H 0.05 2.20 8.12 -2.39 -0.02 2.18 16 Total: -1.00 -61.64 317.19 2.26 -59.38 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.96 Total: 12.93 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 3.38 Total: -39.99 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -4.10 Total: -78.91 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -61.64 2.26 -59.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723124395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.577 kcal (2) G-P(sol) polarization free energy of solvation -61.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds