Wall clock time and date at job start Sun Mar 29 2020 21:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.30341 * 119.99988 * 2 1 4 4 N 1.37490 * 120.00060 * 185.26178 * 3 2 1 5 5 C 1.46497 * 119.99941 * 0.27328 * 4 3 2 6 6 C 1.52993 * 109.47323 * 175.06112 * 5 4 3 7 7 C 1.50704 * 115.55097 * 64.96780 * 6 5 4 8 8 H 1.07990 * 120.00192 * 273.38276 * 7 6 5 9 9 C 1.37879 * 119.99647 * 93.37800 * 7 6 5 10 10 N 1.31513 * 119.99941 * 4.53807 * 9 7 6 11 11 Si 1.86803 * 119.99927 * 184.53389 * 9 7 6 12 12 H 1.48497 * 109.46911 * 90.00391 * 11 9 7 13 13 H 1.48498 * 109.47153 * 210.00339 * 11 9 7 14 14 H 1.48499 * 109.47039 * 330.00448 * 11 9 7 15 15 C 1.52996 * 117.49960 * 279.30401 * 6 5 4 16 16 C 1.53004 * 117.49936 * 210.64039 * 6 5 4 17 17 N 1.37481 * 120.00109 * 5.25809 * 3 2 1 18 18 C 1.46505 * 120.00094 * 185.26925 * 17 3 2 19 19 C 1.53004 * 117.50001 * 228.60814 * 18 17 3 20 20 C 1.52995 * 117.49913 * 159.94969 * 18 17 3 21 21 H 1.09004 * 109.47138 * 295.02191 * 1 2 3 22 22 H 1.09000 * 109.47075 * 55.01279 * 1 2 3 23 23 H 1.08990 * 109.47287 * 175.01714 * 1 2 3 24 24 H 0.97003 * 119.99659 * 180.02562 * 4 3 2 25 25 H 1.09010 * 109.46929 * 295.06363 * 5 4 3 26 26 H 1.09003 * 109.47333 * 55.05505 * 5 4 3 27 27 H 0.97003 * 119.99935 * 185.00241 * 10 9 7 28 28 H 1.09007 * 117.49691 * 359.97438 * 15 6 5 29 29 H 1.08994 * 117.50432 * 145.02061 * 15 6 5 30 30 H 1.08996 * 117.49468 * 214.97910 * 16 6 5 31 31 H 1.09000 * 117.49690 * 359.97438 * 16 6 5 32 32 H 0.96996 * 120.00426 * 5.26582 * 17 3 2 33 33 H 1.08998 * 115.55010 * 14.28036 * 18 17 3 34 34 H 1.09007 * 117.49386 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.50177 * 145.01567 * 19 18 17 36 36 H 1.09003 * 117.49856 * 214.97617 * 20 18 17 37 37 H 1.08999 * 117.50245 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1167 1.1288 0.0000 4 7 3.4873 1.1313 -0.1092 5 6 4.2146 -0.1344 -0.2316 6 6 5.7002 0.1511 -0.4603 7 6 6.4150 0.8286 0.6804 8 1 6.4086 1.9057 0.7581 9 6 7.0772 0.0731 1.6248 10 7 7.1611 -1.2316 1.4824 11 14 7.8552 0.9029 3.1066 12 1 6.8669 0.9680 4.2130 13 1 9.0395 0.1221 3.5461 14 1 8.2777 2.2782 2.7387 15 6 6.1403 0.5082 -1.8814 16 6 6.4940 -0.8592 -1.2911 17 7 1.4337 2.3169 0.1091 18 6 2.1523 3.5883 -0.0067 19 6 1.8912 4.6477 1.0660 20 6 1.3327 4.8346 -0.3469 21 1 -0.3633 0.4347 0.9312 22 1 -0.3633 0.5893 -0.8419 23 1 -0.3633 -1.0237 -0.0893 24 1 3.9722 1.9714 -0.1088 25 1 4.0926 -0.7136 0.6839 26 1 3.8193 -0.7006 -1.0750 27 1 7.5628 -1.7709 2.1814 28 1 5.3715 0.5394 -2.6535 29 1 6.9471 1.2328 -1.9913 30 1 7.5333 -1.0335 -1.0128 31 1 5.9579 -1.7274 -1.6743 32 1 0.4759 2.3135 0.2627 33 1 3.1611 3.5227 -0.4142 34 1 1.1849 4.3984 1.8580 35 1 2.7281 5.2792 1.3640 36 1 1.8025 5.5892 -0.9779 37 1 0.2589 4.7086 -0.4850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849025942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:30 Heat of formation + Delta-G solvation = 84.017898 kcal Electronic energy + Delta-G solvation = -16990.489856 eV Core-core repulsion = 14383.942028 eV Total energy + Delta-G solvation = -2606.547828 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.84983 -36.98543 -35.92323 -32.85528 -31.84626 -31.13004 -26.53549 -25.45872 -24.70714 -22.44339 -21.76374 -21.01543 -19.53438 -18.99857 -17.39449 -16.33227 -15.81454 -14.74557 -14.62602 -14.24136 -14.04024 -13.89381 -13.25953 -12.85178 -12.44460 -12.31416 -12.28231 -11.90550 -11.63234 -11.45492 -11.00986 -10.84985 -10.59508 -10.50516 -10.25247 -10.10333 -9.38301 -8.97879 -8.56980 -8.36313 -8.13871 -8.01207 -7.13172 -6.01897 -4.10826 3.29331 3.31587 3.36694 3.36926 3.37649 3.93790 4.21258 4.40511 4.80092 4.87297 4.93371 5.24627 5.43324 5.52882 5.57627 5.69414 5.82587 5.95626 5.99432 6.03011 6.16823 6.22586 6.46644 6.60728 6.74969 6.78880 6.85495 7.23394 7.28510 7.37350 7.53207 7.69361 7.84670 7.91801 8.41215 8.53937 8.89956 9.25182 9.55444 11.05003 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.007456 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.479850 B = 3754.500927 C = 4280.822528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.678 5.678 3 C 0.626 3.374 4 N -0.701 5.701 5 C 0.192 3.808 6 C 0.017 3.983 7 C -0.495 4.495 8 H 0.057 0.943 9 C 0.073 3.927 10 N -0.875 5.875 11 Si 0.887 3.113 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.275 1.275 15 C -0.215 4.215 16 C -0.133 4.133 17 N -0.740 5.740 18 C 0.086 3.914 19 C -0.199 4.199 20 C -0.193 4.193 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.065 0.935 24 H 0.401 0.599 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.260 0.740 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.403 0.597 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 8.903 -2.992 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.423 5.423 3 C 0.263 3.737 4 N -0.342 5.342 5 C 0.069 3.931 6 C 0.016 3.984 7 C -0.533 4.533 8 H 0.075 0.925 9 C -0.130 4.130 10 N -0.511 5.511 11 Si 0.715 3.285 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.252 4.252 16 C -0.171 4.171 17 N -0.385 5.385 18 C -0.023 4.023 19 C -0.238 4.238 20 C -0.231 4.231 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.084 0.916 24 H 0.237 0.763 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.240 0.760 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.068 7.690 -2.975 12.256 hybrid contribution -0.313 1.536 1.089 1.909 sum -9.381 9.226 -1.886 13.293 Atomic orbital electron populations 1.21618 0.89825 1.00888 0.97366 1.72726 1.06819 1.19303 1.43463 1.19310 0.85650 0.81275 0.87425 1.44201 1.00320 1.10786 1.78876 1.20806 0.89895 0.82625 0.99819 1.19132 0.90369 0.99930 0.88954 1.20330 1.32162 0.92418 1.08353 0.92501 1.24959 0.95177 0.94948 0.97926 1.70013 1.44189 1.04370 1.32564 0.86679 0.78915 0.79499 0.83421 1.20671 1.21286 1.19944 1.23051 1.02995 1.00553 0.98618 1.22427 1.01603 0.90218 1.02901 1.44899 1.09988 1.02690 1.80902 1.21500 0.97375 0.80947 1.02450 1.23454 1.04041 1.03757 0.92573 1.23326 1.00145 1.00528 0.99135 0.95968 0.95913 0.91642 0.76252 0.92219 0.94285 0.92973 0.91902 0.90644 0.89022 0.91944 0.76034 0.85447 0.88804 0.88124 0.88122 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.85 9.95 59.85 0.60 1.45 16 2 N -0.68 -13.32 10.17 -68.58 -0.70 -14.02 16 3 C 0.63 11.48 8.36 -320.08 -2.68 8.80 16 4 N -0.70 -13.77 5.49 -61.79 -0.34 -14.10 16 5 C 0.19 4.37 5.50 -4.05 -0.02 4.34 16 6 C 0.02 0.40 1.63 -155.66 -0.25 0.15 16 7 C -0.49 -12.87 8.64 -34.44 -0.30 -13.17 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.07 1.97 5.41 -17.82 -0.10 1.87 16 10 N -0.87 -24.45 11.92 55.43 0.66 -23.79 16 11 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 C -0.21 -4.59 9.96 -26.69 -0.27 -4.86 16 16 C -0.13 -3.14 8.86 -26.69 -0.24 -3.37 16 17 N -0.74 -10.55 5.53 -55.28 -0.31 -10.85 16 18 C 0.09 1.06 6.28 -67.93 -0.43 0.64 16 19 C -0.20 -2.11 10.46 -26.69 -0.28 -2.39 16 20 C -0.19 -1.85 10.45 -26.70 -0.28 -2.13 16 21 H 0.02 0.31 7.88 -51.93 -0.41 -0.10 16 22 H 0.02 0.32 7.99 -51.93 -0.42 -0.10 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.40 7.43 6.15 -40.82 -0.25 7.18 16 25 H 0.06 1.54 8.14 -51.92 -0.42 1.12 16 26 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 27 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.09 2.34 7.64 -51.93 -0.40 1.94 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.40 5.11 7.16 -40.82 -0.29 4.82 16 33 H 0.13 1.63 6.36 -51.93 -0.33 1.30 16 34 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -28.49 310.14 -11.13 -39.62 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.87 Total: 11.37 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -4.24 Total: -8.67 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.68 Total: -62.76 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.49 -11.13 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849025942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.639 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds