Wall clock time and date at job start Sun Mar 29 2020 21:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.30341 * 119.99988 * 2 1 4 4 N 1.37490 * 120.00060 * 185.26178 * 3 2 1 5 5 C 1.46497 * 119.99941 * 0.27328 * 4 3 2 6 6 C 1.52993 * 109.47323 * 175.06112 * 5 4 3 7 7 C 1.50704 * 115.55097 * 64.96780 * 6 5 4 8 8 H 1.07990 * 120.00192 * 273.38276 * 7 6 5 9 9 C 1.37879 * 119.99647 * 93.37800 * 7 6 5 10 10 N 1.31513 * 119.99941 * 4.53807 * 9 7 6 11 11 Si 1.86803 * 119.99927 * 184.53389 * 9 7 6 12 12 H 1.48497 * 109.46911 * 90.00391 * 11 9 7 13 13 H 1.48498 * 109.47153 * 210.00339 * 11 9 7 14 14 H 1.48499 * 109.47039 * 330.00448 * 11 9 7 15 15 C 1.52996 * 117.49960 * 279.30401 * 6 5 4 16 16 C 1.53004 * 117.49936 * 210.64039 * 6 5 4 17 17 N 1.37481 * 120.00109 * 5.25809 * 3 2 1 18 18 C 1.46505 * 120.00094 * 185.26925 * 17 3 2 19 19 C 1.53004 * 117.50001 * 228.60814 * 18 17 3 20 20 C 1.52995 * 117.49913 * 159.94969 * 18 17 3 21 21 H 1.09004 * 109.47138 * 295.02191 * 1 2 3 22 22 H 1.09000 * 109.47075 * 55.01279 * 1 2 3 23 23 H 1.08990 * 109.47287 * 175.01714 * 1 2 3 24 24 H 0.97003 * 119.99659 * 180.02562 * 4 3 2 25 25 H 1.09010 * 109.46929 * 295.06363 * 5 4 3 26 26 H 1.09003 * 109.47333 * 55.05505 * 5 4 3 27 27 H 0.97003 * 119.99935 * 185.00241 * 10 9 7 28 28 H 1.09007 * 117.49691 * 359.97438 * 15 6 5 29 29 H 1.08994 * 117.50432 * 145.02061 * 15 6 5 30 30 H 1.08996 * 117.49468 * 214.97910 * 16 6 5 31 31 H 1.09000 * 117.49690 * 359.97438 * 16 6 5 32 32 H 0.96996 * 120.00426 * 5.26582 * 17 3 2 33 33 H 1.08998 * 115.55010 * 14.28036 * 18 17 3 34 34 H 1.09007 * 117.49386 * 0.02562 * 19 18 17 35 35 H 1.09000 * 117.50177 * 145.01567 * 19 18 17 36 36 H 1.09003 * 117.49856 * 214.97617 * 20 18 17 37 37 H 1.08999 * 117.50245 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1167 1.1288 0.0000 4 7 3.4873 1.1313 -0.1092 5 6 4.2146 -0.1344 -0.2316 6 6 5.7002 0.1511 -0.4603 7 6 6.4150 0.8286 0.6804 8 1 6.4086 1.9057 0.7581 9 6 7.0772 0.0731 1.6248 10 7 7.1611 -1.2316 1.4824 11 14 7.8552 0.9029 3.1066 12 1 6.8669 0.9680 4.2130 13 1 9.0395 0.1221 3.5461 14 1 8.2777 2.2782 2.7387 15 6 6.1403 0.5082 -1.8814 16 6 6.4940 -0.8592 -1.2911 17 7 1.4337 2.3169 0.1091 18 6 2.1523 3.5883 -0.0067 19 6 1.8912 4.6477 1.0660 20 6 1.3327 4.8346 -0.3469 21 1 -0.3633 0.4347 0.9312 22 1 -0.3633 0.5893 -0.8419 23 1 -0.3633 -1.0237 -0.0893 24 1 3.9722 1.9714 -0.1088 25 1 4.0926 -0.7136 0.6839 26 1 3.8193 -0.7006 -1.0750 27 1 7.5628 -1.7709 2.1814 28 1 5.3715 0.5394 -2.6535 29 1 6.9471 1.2328 -1.9913 30 1 7.5333 -1.0335 -1.0128 31 1 5.9579 -1.7274 -1.6743 32 1 0.4759 2.3135 0.2627 33 1 3.1611 3.5227 -0.4142 34 1 1.1849 4.3984 1.8580 35 1 2.7281 5.2792 1.3640 36 1 1.8025 5.5892 -0.9779 37 1 0.2589 4.7086 -0.4850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849025942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:29 Heat of formation + Delta-G solvation = 68.253544 kcal Electronic energy + Delta-G solvation = -16991.173450 eV Core-core repulsion = 14383.942028 eV Total energy + Delta-G solvation = -2607.231422 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10568 -38.57995 -37.19320 -34.43225 -33.81905 -32.31704 -28.19801 -27.19960 -26.34909 -23.22422 -22.83360 -22.75190 -21.25281 -20.51366 -18.85207 -17.82068 -17.30478 -16.62361 -15.80976 -15.76259 -15.50613 -15.14705 -14.88185 -14.44957 -14.00632 -13.66260 -13.39753 -13.35107 -13.16595 -12.89568 -12.77242 -12.39013 -12.33852 -11.95273 -11.53505 -11.45671 -11.25180 -10.88140 -10.33401 -10.03642 -9.84173 -9.32742 -8.57569 -8.05581 -6.18698 1.43082 1.45066 1.52813 2.02365 2.07342 2.44935 2.88984 3.05169 3.21707 3.60830 3.90330 4.01262 4.11198 4.26384 4.39653 4.62221 4.65901 4.76234 4.77210 4.79428 4.83905 4.93347 5.00389 5.04986 5.06613 5.14951 5.24887 5.38122 5.66925 5.75064 5.80267 5.92933 6.16482 6.39248 6.45469 6.88309 7.14382 7.49730 7.88265 9.01028 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.007456 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.479850 B = 3754.500927 C = 4280.822528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.722 5.722 3 C 0.622 3.378 4 N -0.703 5.703 5 C 0.216 3.784 6 C -0.002 4.002 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 0.946 3.054 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.263 1.263 15 C -0.182 4.182 16 C -0.145 4.145 17 N -0.728 5.728 18 C 0.056 3.944 19 C -0.196 4.196 20 C -0.166 4.166 21 H 0.034 0.966 22 H 0.039 0.961 23 H 0.065 0.935 24 H 0.405 0.595 25 H 0.018 0.982 26 H 0.035 0.965 27 H 0.258 0.742 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.411 0.589 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 11.078 -3.341 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.469 5.469 3 C 0.258 3.742 4 N -0.345 5.345 5 C 0.091 3.909 6 C -0.003 4.003 7 C -0.538 4.538 8 H 0.078 0.922 9 C -0.176 4.176 10 N -0.545 5.545 11 Si 0.773 3.227 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.188 1.188 15 C -0.219 4.219 16 C -0.183 4.183 17 N -0.373 5.373 18 C -0.052 4.052 19 C -0.235 4.235 20 C -0.205 4.205 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.243 0.757 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.249 0.751 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.070 9.920 -3.329 14.522 hybrid contribution -0.074 0.890 1.178 1.478 sum -10.143 10.810 -2.151 14.979 Atomic orbital electron populations 1.21647 0.87727 1.01468 0.98625 1.72622 1.09263 1.21015 1.43966 1.19187 0.85101 0.82555 0.87319 1.43960 1.01060 1.09735 1.79737 1.20261 0.89672 0.83524 0.97462 1.19176 0.90694 1.00600 0.89833 1.20642 1.31597 0.92648 1.08893 0.92227 1.25667 0.96010 0.95456 1.00499 1.70137 1.45484 1.05573 1.33268 0.85739 0.77777 0.78965 0.80250 1.20894 1.21500 1.18768 1.23004 1.02927 0.98649 0.97351 1.22324 1.00297 0.91582 1.04113 1.44730 1.10194 1.02244 1.80110 1.21660 0.97760 0.80853 1.04965 1.23498 1.04369 1.02619 0.93040 1.23403 1.00500 0.98329 0.98237 0.94715 0.94281 0.91578 0.75690 0.96372 0.94663 0.93311 0.89663 0.90141 0.91474 0.91359 0.75056 0.86206 0.88806 0.87446 0.86502 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.68 9.95 127.77 1.27 2.95 16 2 N -0.72 -28.11 10.17 -370.89 -3.77 -31.88 16 3 C 0.62 22.36 8.36 260.53 2.18 24.54 16 4 N -0.70 -27.42 5.49 -349.41 -1.92 -29.34 16 5 C 0.22 9.94 5.50 86.38 0.47 10.42 16 6 C 0.00 -0.11 1.63 -52.93 -0.09 -0.19 16 7 C -0.50 -25.98 8.64 25.60 0.22 -25.76 16 8 H 0.06 2.99 7.82 -2.92 -0.02 2.97 16 9 C 0.02 1.29 5.41 84.66 0.46 1.75 16 10 N -0.91 -51.77 11.92 21.45 0.26 -51.51 16 11 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 15 C -0.18 -7.54 9.96 30.62 0.30 -7.24 16 16 C -0.14 -6.86 8.86 30.62 0.27 -6.59 16 17 N -0.73 -19.53 5.53 -328.81 -1.82 -21.35 16 18 C 0.06 1.26 6.28 44.99 0.28 1.54 16 19 C -0.20 -3.66 10.46 30.62 0.32 -3.34 16 20 C -0.17 -2.64 10.45 30.62 0.32 -2.32 16 21 H 0.03 0.93 7.88 -2.39 -0.02 0.91 16 22 H 0.04 1.01 7.99 -2.39 -0.02 1.00 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.41 14.78 6.15 -92.71 -0.57 14.21 16 25 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 27 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 28 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 29 H 0.08 3.25 8.14 -2.39 -0.02 3.24 16 30 H 0.07 3.49 7.64 -2.39 -0.02 3.48 16 31 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.41 9.55 7.16 -92.71 -0.66 8.89 16 33 H 0.12 2.88 6.36 -2.39 -0.02 2.87 16 34 H 0.09 1.76 8.14 -2.38 -0.02 1.75 16 35 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -61.02 310.14 0.62 -60.40 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.17 Total: 33.06 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.02 Total: -4.26 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -7.25 Total: -134.07 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -61.02 0.62 -60.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849025942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.654 kcal (2) G-P(sol) polarization free energy of solvation -61.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds