Wall clock time and date at job start Sun Mar 29 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29437 * 117.96414 * 2 1 4 4 C 1.50709 * 117.96130 * 0.51441 * 3 2 1 5 5 C 1.50163 * 124.15069 * 180.26146 * 3 2 1 6 6 C 1.53025 * 110.09271 * 343.28398 * 5 3 2 7 7 H 1.08999 * 109.63786 * 289.31740 * 6 5 3 8 8 C 1.52999 * 109.63825 * 168.90386 * 6 5 3 9 9 H 1.09000 * 109.46982 * 185.41778 * 8 6 5 10 10 C 1.52997 * 109.47280 * 305.41771 * 8 6 5 11 11 N 1.46904 * 109.47558 * 65.42225 * 8 6 5 12 12 C 1.46895 * 111.00164 * 154.99602 * 11 8 6 13 13 C 1.50698 * 109.47074 * 179.97438 * 12 11 8 14 14 H 1.08007 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00065 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47459 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46963 * 300.00056 * 17 15 13 20 20 H 1.48498 * 109.47002 * 60.00166 * 17 15 13 21 21 C 1.53388 * 108.61625 * 49.11289 * 6 5 3 22 22 C 1.50070 * 117.96285 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.47240 * 275.24484 * 1 2 3 24 24 H 1.09003 * 109.46882 * 35.24297 * 1 2 3 25 25 H 1.08997 * 109.47312 * 155.24588 * 1 2 3 26 26 H 1.08994 * 109.46937 * 54.91393 * 4 3 2 27 27 H 1.08995 * 109.46867 * 174.91679 * 4 3 2 28 28 H 1.08999 * 109.46929 * 294.91276 * 4 3 2 29 29 H 1.09003 * 109.56421 * 222.97935 * 5 3 2 30 30 H 1.09003 * 109.20826 * 103.36866 * 5 3 2 31 31 H 1.09002 * 109.47309 * 180.02562 * 10 8 6 32 32 H 1.09000 * 109.46941 * 299.99908 * 10 8 6 33 33 H 1.08992 * 109.47196 * 60.00386 * 10 8 6 34 34 H 1.00899 * 110.99802 * 278.95364 * 11 8 6 35 35 H 1.08999 * 109.47305 * 60.00121 * 12 11 8 36 36 H 1.09001 * 109.47266 * 300.00065 * 12 11 8 37 37 H 0.96998 * 119.99911 * 359.97438 * 16 15 13 38 38 H 1.09003 * 109.64304 * 52.35263 * 21 6 5 39 39 H 1.08995 * 109.64725 * 172.77212 * 21 6 5 40 40 H 1.09004 * 109.35723 * 42.63859 * 22 2 1 41 41 H 1.08996 * 109.24821 * 282.98575 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1432 0.0000 4 6 1.2696 2.3916 0.0120 5 6 3.6068 1.3051 -0.0057 6 6 4.2795 -0.0075 0.4022 7 1 4.1093 -0.1922 1.4628 8 6 5.7826 0.0786 0.1299 9 1 6.2441 -0.8883 0.3303 10 6 6.0147 0.4611 -1.3332 11 7 6.3809 1.0972 1.0031 12 6 7.8079 0.8281 1.2249 13 6 8.3860 1.8916 2.1225 14 1 7.7562 2.6876 2.4917 15 6 9.7187 1.8479 2.4733 16 7 10.4855 0.8784 2.0241 17 14 10.4352 3.1657 3.5866 18 1 11.8778 2.8938 3.8107 19 1 10.2765 4.4956 2.9450 20 1 9.7210 3.1558 4.8885 21 6 3.6702 -1.1473 -0.4240 22 6 2.2107 -1.3255 -0.0006 23 1 -0.3634 0.0939 1.0234 24 1 -0.3633 0.8393 -0.5930 25 1 -0.3634 -0.9332 -0.4303 26 1 0.5835 2.3580 0.8582 27 1 1.9147 3.2656 0.1016 28 1 0.7001 2.4539 -0.9153 29 1 3.8916 2.0900 0.6951 30 1 3.9337 1.5825 -1.0079 31 1 7.0856 0.5220 -1.5274 32 1 5.5709 -0.2948 -1.9811 33 1 5.5533 1.4279 -1.5337 34 1 6.2417 2.0230 0.6269 35 1 8.3319 0.8357 0.2691 36 1 7.9247 -0.1481 1.6955 37 1 10.1134 0.1939 1.4464 38 1 3.7161 -0.8967 -1.4839 39 1 4.2232 -2.0686 -0.2412 40 1 1.7119 -1.9991 -0.6975 41 1 2.1749 -1.7517 1.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877483570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:37 Heat of formation + Delta-G solvation = -21.602528 kcal Electronic energy + Delta-G solvation = -17261.317532 eV Core-core repulsion = 14753.730002 eV Total energy + Delta-G solvation = -2507.587530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.48976 -36.49307 -33.73628 -32.39806 -31.35240 -29.06384 -27.06257 -26.03736 -25.45549 -23.24146 -22.47489 -21.36830 -19.19257 -16.97935 -16.68637 -15.12262 -14.89737 -14.68158 -14.28627 -14.03291 -13.70619 -13.66168 -13.58442 -12.79574 -12.53951 -12.39186 -12.11459 -12.10418 -11.81501 -11.67032 -11.55391 -11.41162 -11.14823 -10.74499 -10.67177 -10.53374 -10.20531 -10.13567 -10.01929 -9.78166 -8.58970 -8.39634 -8.38253 -7.32101 -6.35151 -4.03659 2.28361 3.45980 3.48713 3.67139 4.54911 4.71229 4.81080 4.93622 5.11390 5.26004 5.35533 5.40981 5.42505 5.44697 5.51225 5.53203 5.63073 5.70191 5.73430 5.81820 5.85144 5.89855 5.93469 5.96917 6.03779 6.15648 6.22357 6.26457 6.36058 6.45561 6.54842 6.74761 6.83566 7.03010 7.18085 7.22561 7.84689 8.20412 8.52643 8.61422 8.90273 9.68147 11.04677 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037882 B = 0.004865 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.968124 B = 5753.513384 C = 6131.891706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.143 4.143 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.079 4.079 6 C -0.071 4.071 7 H 0.076 0.924 8 C 0.086 3.914 9 H 0.068 0.932 10 C -0.183 4.183 11 N -0.677 5.677 12 C 0.184 3.816 13 C -0.594 4.594 14 H 0.055 0.945 15 C 0.014 3.986 16 N -0.915 5.915 17 Si 1.073 2.927 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.287 1.287 21 C -0.115 4.115 22 C -0.076 4.076 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.330 0.670 35 H -0.024 1.024 36 H 0.016 0.984 37 H 0.267 0.733 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.102 -1.581 -6.409 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.143 4.143 3 C -0.119 4.119 4 C -0.176 4.176 5 C -0.115 4.115 6 C -0.090 4.090 7 H 0.094 0.906 8 C -0.025 4.025 9 H 0.086 0.914 10 C -0.242 4.242 11 N -0.306 5.306 12 C 0.057 3.943 13 C -0.633 4.633 14 H 0.073 0.927 15 C -0.190 4.190 16 N -0.551 5.551 17 Si 0.901 3.099 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.153 4.153 22 C -0.113 4.113 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.147 0.853 35 H -0.007 1.007 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.893 -1.389 -5.067 17.691 hybrid contribution -1.059 -0.307 -1.653 1.987 sum -17.951 -1.696 -6.720 19.243 Atomic orbital electron populations 1.20944 0.93212 1.01824 1.01556 1.20609 0.95132 0.94637 1.03904 1.20822 0.95878 0.94278 1.00949 1.20945 0.99206 0.96172 1.01253 1.20559 0.90509 0.98676 1.01803 1.21172 0.93933 0.93859 1.00052 0.90578 1.21540 0.93837 0.97032 0.90109 0.91365 1.22610 1.01596 1.01314 0.98659 1.60644 1.17939 1.04079 1.47938 1.19665 0.82793 0.97346 0.94503 1.22017 0.96903 1.11855 1.32499 0.92682 1.25855 0.93845 1.00647 0.98621 1.70794 1.38658 1.12981 1.32693 0.83487 0.76058 0.74645 0.75695 1.20851 1.21507 1.21385 1.21685 0.94866 0.98819 0.99951 1.20329 0.95198 0.94474 1.01294 0.92008 0.91969 0.92619 0.92021 0.92207 0.92022 0.90454 0.90962 0.92875 0.92866 0.92478 0.85289 1.00652 0.96593 0.92327 0.91973 0.91894 0.91755 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 8.98 36.01 0.32 -0.81 16 2 C -0.14 -1.68 5.84 -100.94 -0.59 -2.27 16 3 C -0.12 -1.49 5.84 -100.89 -0.59 -2.08 16 4 C -0.12 -1.26 8.55 36.01 0.31 -0.95 16 5 C -0.08 -1.10 4.47 -28.13 -0.13 -1.22 16 6 C -0.07 -1.07 2.22 -90.41 -0.20 -1.27 16 7 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 8 C 0.09 1.51 2.38 -67.71 -0.16 1.35 16 9 H 0.07 1.29 7.80 -51.93 -0.40 0.89 16 10 C -0.18 -2.89 8.45 37.16 0.31 -2.58 16 11 N -0.68 -14.63 5.98 -108.00 -0.65 -15.28 16 12 C 0.18 4.86 4.55 -4.98 -0.02 4.84 16 13 C -0.59 -17.27 9.32 -34.44 -0.32 -17.60 16 14 H 0.05 1.59 7.81 -52.48 -0.41 1.18 16 15 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 16 N -0.91 -28.40 13.65 55.43 0.76 -27.64 16 17 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.12 -1.46 4.85 -26.52 -0.13 -1.59 16 22 C -0.08 -0.87 5.77 -28.18 -0.16 -1.03 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.55 6.33 -51.93 -0.33 0.22 16 25 H 0.05 0.48 7.98 -51.93 -0.41 0.06 16 26 H 0.06 0.61 7.71 -51.93 -0.40 0.21 16 27 H 0.06 0.63 7.93 -51.93 -0.41 0.22 16 28 H 0.06 0.58 7.33 -51.93 -0.38 0.20 16 29 H 0.08 1.17 7.91 -51.93 -0.41 0.76 16 30 H 0.07 0.99 5.75 -51.93 -0.30 0.69 16 31 H 0.05 0.93 7.45 -51.93 -0.39 0.55 16 32 H 0.05 0.73 6.74 -51.93 -0.35 0.38 16 33 H 0.06 0.85 6.10 -51.93 -0.32 0.53 16 34 H 0.33 6.93 8.12 -39.29 -0.32 6.61 16 35 H -0.02 -0.66 7.30 -51.93 -0.38 -1.04 16 36 H 0.02 0.45 7.92 -51.93 -0.41 0.04 16 37 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 38 H 0.06 0.77 6.95 -51.93 -0.36 0.41 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.52 15.07 4.71 4.71 Total: -1.00 -30.53 312.52 -8.90 -39.43 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.18 Total: 3.06 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -1.45 Total: -24.90 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.11 Total: -42.92 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.53 -8.90 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.827 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds