Wall clock time and date at job start Sun Mar 29 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29437 * 117.96414 * 2 1 4 4 C 1.50709 * 117.96130 * 0.51441 * 3 2 1 5 5 C 1.50163 * 124.15069 * 180.26146 * 3 2 1 6 6 C 1.53025 * 110.09271 * 343.28398 * 5 3 2 7 7 H 1.08999 * 109.63786 * 289.31740 * 6 5 3 8 8 C 1.52999 * 109.63825 * 168.90386 * 6 5 3 9 9 H 1.09000 * 109.46982 * 185.41778 * 8 6 5 10 10 C 1.52997 * 109.47280 * 305.41771 * 8 6 5 11 11 N 1.46904 * 109.47558 * 65.42225 * 8 6 5 12 12 C 1.46895 * 111.00164 * 154.99602 * 11 8 6 13 13 C 1.50698 * 109.47074 * 179.97438 * 12 11 8 14 14 H 1.08007 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00065 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47459 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46963 * 300.00056 * 17 15 13 20 20 H 1.48498 * 109.47002 * 60.00166 * 17 15 13 21 21 C 1.53388 * 108.61625 * 49.11289 * 6 5 3 22 22 C 1.50070 * 117.96285 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.47240 * 275.24484 * 1 2 3 24 24 H 1.09003 * 109.46882 * 35.24297 * 1 2 3 25 25 H 1.08997 * 109.47312 * 155.24588 * 1 2 3 26 26 H 1.08994 * 109.46937 * 54.91393 * 4 3 2 27 27 H 1.08995 * 109.46867 * 174.91679 * 4 3 2 28 28 H 1.08999 * 109.46929 * 294.91276 * 4 3 2 29 29 H 1.09003 * 109.56421 * 222.97935 * 5 3 2 30 30 H 1.09003 * 109.20826 * 103.36866 * 5 3 2 31 31 H 1.09002 * 109.47309 * 180.02562 * 10 8 6 32 32 H 1.09000 * 109.46941 * 299.99908 * 10 8 6 33 33 H 1.08992 * 109.47196 * 60.00386 * 10 8 6 34 34 H 1.00899 * 110.99802 * 278.95364 * 11 8 6 35 35 H 1.08999 * 109.47305 * 60.00121 * 12 11 8 36 36 H 1.09001 * 109.47266 * 300.00065 * 12 11 8 37 37 H 0.96998 * 119.99911 * 359.97438 * 16 15 13 38 38 H 1.09003 * 109.64304 * 52.35263 * 21 6 5 39 39 H 1.08995 * 109.64725 * 172.77212 * 21 6 5 40 40 H 1.09004 * 109.35723 * 42.63859 * 22 2 1 41 41 H 1.08996 * 109.24821 * 282.98575 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1432 0.0000 4 6 1.2696 2.3916 0.0120 5 6 3.6068 1.3051 -0.0057 6 6 4.2795 -0.0075 0.4022 7 1 4.1093 -0.1922 1.4628 8 6 5.7826 0.0786 0.1299 9 1 6.2441 -0.8883 0.3303 10 6 6.0147 0.4611 -1.3332 11 7 6.3809 1.0972 1.0031 12 6 7.8079 0.8281 1.2249 13 6 8.3860 1.8916 2.1225 14 1 7.7562 2.6876 2.4917 15 6 9.7187 1.8479 2.4733 16 7 10.4855 0.8784 2.0241 17 14 10.4352 3.1657 3.5866 18 1 11.8778 2.8938 3.8107 19 1 10.2765 4.4956 2.9450 20 1 9.7210 3.1558 4.8885 21 6 3.6702 -1.1473 -0.4240 22 6 2.2107 -1.3255 -0.0006 23 1 -0.3634 0.0939 1.0234 24 1 -0.3633 0.8393 -0.5930 25 1 -0.3634 -0.9332 -0.4303 26 1 0.5835 2.3580 0.8582 27 1 1.9147 3.2656 0.1016 28 1 0.7001 2.4539 -0.9153 29 1 3.8916 2.0900 0.6951 30 1 3.9337 1.5825 -1.0079 31 1 7.0856 0.5220 -1.5274 32 1 5.5709 -0.2948 -1.9811 33 1 5.5533 1.4279 -1.5337 34 1 6.2417 2.0230 0.6269 35 1 8.3319 0.8357 0.2691 36 1 7.9247 -0.1481 1.6955 37 1 10.1134 0.1939 1.4464 38 1 3.7161 -0.8967 -1.4839 39 1 4.2232 -2.0686 -0.2412 40 1 1.7119 -1.9991 -0.6975 41 1 2.1749 -1.7517 1.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877483570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:37 Heat of formation + Delta-G solvation = -39.334677 kcal Electronic energy + Delta-G solvation = -17262.086456 eV Core-core repulsion = 14753.730002 eV Total energy + Delta-G solvation = -2508.356454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61012 -37.93854 -35.56923 -33.86882 -32.54526 -30.51664 -28.03149 -27.52213 -27.00371 -24.52156 -24.15294 -22.81267 -20.53766 -19.01479 -17.83656 -16.39571 -16.27291 -15.88936 -15.68365 -15.60597 -15.20715 -14.87295 -14.74049 -14.24579 -14.17469 -13.50736 -13.33316 -13.20757 -13.07912 -12.97865 -12.78377 -12.57466 -12.50896 -12.45605 -12.29201 -11.92453 -11.87621 -11.43729 -11.31572 -10.96485 -10.68102 -10.61774 -9.31238 -9.16097 -8.71990 -6.42789 1.36805 1.52834 1.61798 1.81532 2.55385 3.12578 3.41087 3.73340 3.77737 4.01963 4.11855 4.22530 4.32479 4.36083 4.48688 4.60661 4.63108 4.66782 4.68583 4.73568 4.78799 4.84685 4.88242 4.97820 5.00185 5.04867 5.06667 5.13968 5.16772 5.18075 5.22473 5.31010 5.36464 5.55054 5.75415 5.88416 6.01840 6.26326 6.39000 6.56517 6.72192 7.39786 8.67560 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037882 B = 0.004865 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.968124 B = 5753.513384 C = 6131.891706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.143 4.143 3 C -0.140 4.140 4 C -0.115 4.115 5 C -0.074 4.074 6 C -0.063 4.063 7 H 0.054 0.946 8 C 0.084 3.916 9 H 0.050 0.950 10 C -0.173 4.173 11 N -0.677 5.677 12 C 0.197 3.803 13 C -0.611 4.611 14 H 0.055 0.945 15 C -0.037 4.037 16 N -0.937 5.937 17 Si 1.124 2.876 18 H -0.283 1.283 19 H -0.267 1.267 20 H -0.271 1.271 21 C -0.111 4.111 22 C -0.077 4.077 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.335 0.665 35 H -0.043 1.043 36 H -0.010 1.010 37 H 0.253 0.747 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.993 -0.937 -6.770 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.143 4.143 3 C -0.140 4.140 4 C -0.172 4.172 5 C -0.111 4.111 6 C -0.082 4.082 7 H 0.072 0.928 8 C -0.027 4.027 9 H 0.068 0.932 10 C -0.232 4.232 11 N -0.307 5.307 12 C 0.069 3.931 13 C -0.649 4.649 14 H 0.073 0.927 15 C -0.235 4.235 16 N -0.574 5.574 17 Si 0.944 3.056 18 H -0.208 1.208 19 H -0.192 1.192 20 H -0.196 1.196 21 C -0.149 4.149 22 C -0.114 4.114 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.152 0.848 35 H -0.025 1.025 36 H 0.008 0.992 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.824 -0.755 -5.449 19.612 hybrid contribution -0.514 -0.580 -1.564 1.745 sum -19.339 -1.336 -7.013 20.614 Atomic orbital electron populations 1.20964 0.91334 1.02935 1.02136 1.20885 0.96605 0.94291 1.02477 1.20870 0.94956 0.95604 1.02533 1.20927 0.99036 0.94980 1.02254 1.20461 0.92006 0.97178 1.01413 1.21039 0.91902 0.95928 0.99312 0.92785 1.21644 0.95325 0.94879 0.90806 0.93211 1.22495 1.00349 1.02871 0.97474 1.60552 1.14884 1.05332 1.49915 1.19337 0.85405 0.95408 0.92949 1.22390 0.97416 1.12317 1.32800 0.92679 1.27498 0.94675 1.01921 0.99373 1.70930 1.39050 1.13751 1.33687 0.82854 0.75369 0.72755 0.74593 1.20797 1.19198 1.19588 1.21654 0.95776 0.97623 0.99824 1.20372 0.94219 0.94997 1.01795 0.91572 0.91045 0.91413 0.91378 0.92681 0.90602 0.92200 0.90572 0.95198 0.90230 0.91214 0.84781 1.02508 0.99235 0.93825 0.91126 0.91808 0.89640 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 8.98 71.24 0.64 -1.23 16 2 C -0.14 -3.01 5.84 -15.09 -0.09 -3.10 16 3 C -0.14 -3.25 5.84 -15.06 -0.09 -3.33 16 4 C -0.12 -2.20 8.55 71.24 0.61 -1.59 16 5 C -0.07 -2.00 4.47 29.69 0.13 -1.87 16 6 C -0.06 -1.87 2.22 -10.66 -0.02 -1.89 16 7 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 8 C 0.08 3.00 2.38 44.91 0.11 3.11 16 9 H 0.05 1.96 7.80 -2.39 -0.02 1.94 16 10 C -0.17 -5.41 8.45 71.98 0.61 -4.81 16 11 N -0.68 -30.08 5.98 -495.59 -2.97 -33.05 16 12 C 0.20 10.83 4.55 85.56 0.39 11.22 16 13 C -0.61 -36.14 9.32 25.60 0.24 -35.90 16 14 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 15 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 16 N -0.94 -59.37 13.65 21.45 0.29 -59.08 16 17 Si 1.12 51.24 29.90 68.60 2.05 53.29 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 C -0.11 -2.64 4.85 30.73 0.15 -2.49 16 22 C -0.08 -1.59 5.77 29.66 0.17 -1.42 16 23 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.07 1.02 6.33 -2.39 -0.02 1.00 16 25 H 0.07 0.92 7.98 -2.39 -0.02 0.90 16 26 H 0.07 1.20 7.71 -2.39 -0.02 1.18 16 27 H 0.05 1.08 7.93 -2.39 -0.02 1.06 16 28 H 0.08 1.21 7.33 -2.39 -0.02 1.20 16 29 H 0.06 1.81 7.91 -2.39 -0.02 1.79 16 30 H 0.08 1.97 5.75 -2.39 -0.01 1.96 16 31 H 0.03 1.06 7.45 -2.39 -0.02 1.04 16 32 H 0.08 2.06 6.74 -2.39 -0.02 2.04 16 33 H 0.07 2.00 6.10 -2.39 -0.01 1.98 16 34 H 0.33 14.28 8.12 -89.69 -0.73 13.55 16 35 H -0.04 -2.46 7.30 -2.39 -0.02 -2.48 16 36 H -0.01 -0.62 7.92 -2.39 -0.02 -0.64 16 37 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 38 H 0.07 1.58 6.95 -2.39 -0.02 1.56 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.44 8.07 -2.39 -0.02 1.42 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.34 312.52 3.05 -63.29 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.36 Total: 20.59 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 3.31 Total: -45.05 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -2.67 Total: -92.12 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -66.34 3.05 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.954 kcal (2) G-P(sol) polarization free energy of solvation -66.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds