Wall clock time and date at job start Sun Mar 29 2020 22:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29172 * 117.75472 * 2 1 4 4 C 1.50699 * 118.04635 * 359.55085 * 3 2 1 5 5 C 1.50070 * 123.99416 * 179.61892 * 3 2 1 6 6 C 1.53019 * 110.14796 * 17.08522 * 5 3 2 7 7 H 1.09000 * 109.64655 * 70.24857 * 6 5 3 8 8 C 1.52998 * 109.82060 * 190.78072 * 6 5 3 9 9 H 1.09002 * 109.47222 * 59.04803 * 8 6 5 10 10 C 1.52995 * 109.47542 * 179.05391 * 8 6 5 11 11 N 1.46905 * 109.46797 * 299.05074 * 8 6 5 12 12 C 1.46901 * 110.99897 * 154.99656 * 11 8 6 13 13 C 1.50705 * 109.47018 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00034 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99895 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00084 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99842 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47094 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46947 * 119.99943 * 17 15 13 20 20 H 1.48498 * 109.47225 * 239.99383 * 17 15 13 21 21 C 1.53395 * 108.43924 * 310.56608 * 6 5 3 22 22 C 1.50070 * 117.96329 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47509 * 269.99483 * 1 2 3 24 24 H 1.09004 * 109.47156 * 29.99925 * 1 2 3 25 25 H 1.09004 * 109.47233 * 149.99647 * 1 2 3 26 26 H 1.08994 * 109.47486 * 270.06686 * 4 3 2 27 27 H 1.09006 * 109.46926 * 30.06293 * 4 3 2 28 28 H 1.08998 * 109.47256 * 150.05900 * 4 3 2 29 29 H 1.09002 * 109.35816 * 256.88395 * 5 3 2 30 30 H 1.08997 * 109.36315 * 137.29615 * 5 3 2 31 31 H 1.09004 * 109.47569 * 180.02562 * 10 8 6 32 32 H 1.09004 * 109.46961 * 299.99881 * 10 8 6 33 33 H 1.09002 * 109.47342 * 59.99485 * 10 8 6 34 34 H 1.00897 * 111.00242 * 278.94881 * 11 8 6 35 35 H 1.08996 * 109.47682 * 300.00104 * 12 11 8 36 36 H 1.09002 * 109.46954 * 60.00697 * 12 11 8 37 37 H 0.97000 * 120.00022 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.64572 * 307.74619 * 21 6 5 39 39 H 1.08999 * 109.81658 * 187.21792 * 21 6 5 40 40 H 1.09002 * 109.35777 * 76.90305 * 22 2 1 41 41 H 1.08998 * 109.35386 * 317.18002 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1085 1.1431 0.0000 4 6 1.2615 2.3895 -0.0104 5 6 3.6003 1.3062 0.0083 6 6 4.2759 -0.0028 -0.4058 7 1 4.1012 -0.1861 -1.4659 8 6 5.7801 0.0831 -0.1398 9 1 5.9515 0.2737 0.9196 10 6 6.4441 -1.2376 -0.5344 11 7 6.3560 1.1769 -0.9335 12 6 7.5880 1.6842 -0.3149 13 6 8.1489 2.8021 -1.1557 14 1 7.6407 3.1057 -2.0590 15 6 9.3108 3.4373 -0.7716 16 7 9.9294 3.0680 0.3286 17 14 10.0055 4.8235 -1.8134 18 1 9.1275 5.0462 -2.9902 19 1 10.0714 6.0663 -1.0033 20 1 11.3696 4.4604 -2.2744 21 6 3.6705 -1.1440 0.4213 22 6 2.2106 -1.3255 -0.0006 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 1.0634 2.6856 -1.0405 27 1 0.3180 2.1919 0.4986 28 1 1.7902 3.1924 0.5032 29 1 3.9282 1.5806 1.0109 30 1 3.8815 2.0945 -0.6899 31 1 7.5157 -1.1766 -0.3445 32 1 6.0168 -2.0493 0.0545 33 1 6.2727 -1.4282 -1.5938 34 1 6.5229 0.8845 -1.8847 35 1 7.3657 2.0573 0.6848 36 1 8.3193 0.8786 -0.2478 37 1 10.7470 3.5147 0.5986 38 1 3.7176 -0.8936 1.4810 39 1 4.2220 -2.0662 0.2380 40 1 2.1742 -1.7534 -1.0024 41 1 1.7138 -1.9986 0.6981 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877483571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:39 Heat of formation + Delta-G solvation = -34.044383 kcal Electronic energy + Delta-G solvation = -17218.883741 eV Core-core repulsion = 14710.756691 eV Total energy + Delta-G solvation = -2508.127049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43414 -37.83169 -35.26859 -33.86130 -32.42597 -30.88604 -28.32872 -27.72293 -26.70075 -24.21580 -23.64422 -22.64167 -21.00985 -18.51096 -17.69921 -16.76206 -16.15146 -15.95240 -15.66645 -15.40675 -15.18531 -14.56886 -14.45822 -14.18404 -14.02214 -13.66917 -13.31345 -13.22869 -12.97357 -12.83275 -12.65181 -12.61939 -12.47727 -12.36283 -12.25453 -12.03736 -11.95290 -11.45038 -11.41952 -10.95786 -10.82283 -10.65535 -9.28171 -8.98806 -8.22371 -6.33345 1.40006 1.40870 1.41540 1.54811 2.39748 3.10862 3.53401 3.74984 3.89617 4.09389 4.26366 4.32885 4.38080 4.49872 4.58849 4.64248 4.67467 4.70016 4.79147 4.83961 4.89683 4.95554 5.00534 5.06270 5.10615 5.11477 5.19814 5.21606 5.24432 5.26310 5.32885 5.41589 5.50852 5.59502 5.65050 5.91500 6.04957 6.32323 6.50648 6.77424 6.93561 7.37912 8.89388 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032891 B = 0.005172 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.101377 B = 5412.364395 C = 6021.377985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 C -0.142 4.142 4 C -0.121 4.121 5 C -0.062 4.062 6 C -0.059 4.059 7 H 0.067 0.933 8 C 0.085 3.915 9 H 0.046 0.954 10 C -0.172 4.172 11 N -0.680 5.680 12 C 0.213 3.787 13 C -0.533 4.533 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.277 1.277 21 C -0.114 4.114 22 C -0.075 4.075 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.332 0.668 35 H -0.007 1.007 36 H -0.039 1.039 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.622 -8.577 -1.206 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C -0.142 4.142 4 C -0.178 4.178 5 C -0.099 4.099 6 C -0.078 4.078 7 H 0.086 0.914 8 C -0.026 4.026 9 H 0.065 0.935 10 C -0.231 4.231 11 N -0.310 5.310 12 C 0.085 3.915 13 C -0.571 4.571 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.205 1.205 20 H -0.202 1.202 21 C -0.152 4.152 22 C -0.112 4.112 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.011 0.989 36 H -0.022 1.022 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.888 -8.038 -0.810 19.628 hybrid contribution 1.655 0.220 -0.249 1.688 sum -16.233 -7.819 -1.060 18.049 Atomic orbital electron populations 1.21016 0.91438 1.02888 1.02296 1.20862 0.96620 0.94405 1.02157 1.20812 0.94977 0.95681 1.02740 1.21016 0.99330 0.95359 1.02085 1.20136 0.91571 0.98014 1.00192 1.21025 0.91983 0.95015 0.99810 0.91424 1.21625 0.94777 0.89461 0.96712 0.93535 1.22448 0.99624 0.98671 1.02322 1.60609 1.30098 1.35068 1.05190 1.19152 0.85615 0.92872 0.93845 1.21598 1.08112 1.17989 1.09428 0.91860 1.25949 0.97109 1.00140 0.96519 1.70105 1.19004 1.43479 1.25000 0.85292 0.78096 0.78268 0.78676 1.18663 1.20454 1.20239 1.21723 0.96098 0.98214 0.99158 1.20367 0.94010 0.94582 1.02194 0.91185 0.91327 0.91232 0.91433 0.90205 0.93117 0.93589 0.92331 0.95094 0.90040 0.91697 0.85042 0.98916 1.02165 0.92684 0.92748 0.90217 0.90399 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 8.83 71.23 0.63 -1.36 16 2 C -0.14 -3.11 5.82 -14.84 -0.09 -3.19 16 3 C -0.14 -3.71 5.83 -14.84 -0.09 -3.80 16 4 C -0.12 -2.75 8.83 71.24 0.63 -2.12 16 5 C -0.06 -1.98 4.81 29.66 0.14 -1.84 16 6 C -0.06 -1.76 2.00 -10.66 -0.02 -1.78 16 7 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 8 C 0.08 3.04 2.16 44.91 0.10 3.14 16 9 H 0.05 1.87 7.80 -2.39 -0.02 1.85 16 10 C -0.17 -5.36 8.83 71.98 0.64 -4.73 16 11 N -0.68 -29.86 5.74 -495.57 -2.85 -32.71 16 12 C 0.21 11.73 5.24 85.56 0.45 12.17 16 13 C -0.53 -31.10 9.32 25.60 0.24 -30.86 16 14 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 15 C 0.00 0.04 5.46 84.65 0.46 0.50 16 16 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 17 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C -0.11 -2.70 5.12 30.74 0.16 -2.54 16 22 C -0.07 -1.49 5.78 29.66 0.17 -1.31 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 1.09 6.12 -2.39 -0.01 1.08 16 25 H 0.07 0.97 8.08 -2.38 -0.02 0.95 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.48 6.14 -2.38 -0.01 1.46 16 28 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 29 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 30 H 0.06 2.13 7.97 -2.39 -0.02 2.11 16 31 H 0.03 1.10 7.45 -2.38 -0.02 1.08 16 32 H 0.08 2.07 6.30 -2.39 -0.02 2.05 16 33 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 34 H 0.33 13.98 8.46 -89.70 -0.76 13.22 16 35 H -0.01 -0.44 8.05 -2.39 -0.02 -0.46 16 36 H -0.04 -2.32 7.44 -2.39 -0.02 -2.33 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.05 1.37 8.12 -2.39 -0.02 1.35 16 39 H 0.08 1.66 6.13 -2.39 -0.01 1.65 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -64.49 317.11 3.10 -61.38 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.22 Total: 19.28 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 3.42 Total: -37.71 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.56 Total: -90.07 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.49 3.10 -61.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.337 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds