Wall clock time and date at job start Sun Mar 29 2020 22:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29438 * 117.95931 * 2 1 4 4 C 1.50703 * 117.96360 * 0.44984 * 3 2 1 5 5 C 1.50073 * 124.07673 * 180.46944 * 3 2 1 6 6 C 1.53022 * 110.14425 * 342.87170 * 5 3 2 7 7 H 1.08998 * 109.64332 * 289.74885 * 6 5 3 8 8 C 1.52998 * 109.63944 * 169.11762 * 6 5 3 9 9 H 1.08999 * 109.47191 * 299.99888 * 8 6 5 10 10 C 1.53007 * 109.47033 * 180.02562 * 8 6 5 11 11 N 1.46901 * 109.47153 * 60.00292 * 8 6 5 12 12 C 1.46903 * 110.99991 * 204.99815 * 11 8 6 13 13 C 1.50700 * 109.47081 * 179.97438 * 12 11 8 14 14 H 1.07999 * 120.00023 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99961 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00073 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47202 * 59.99545 * 17 15 13 19 19 H 1.48497 * 109.47500 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47035 * 299.99887 * 17 15 13 21 21 C 1.53098 * 108.37580 * 49.42714 * 6 5 3 22 22 C 1.50063 * 117.96102 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47114 * 275.23678 * 1 2 3 24 24 H 1.08994 * 109.47295 * 35.24118 * 1 2 3 25 25 H 1.09001 * 109.47170 * 155.24326 * 1 2 3 26 26 H 1.09001 * 109.47203 * 54.90788 * 4 3 2 27 27 H 1.09000 * 109.47344 * 174.91200 * 4 3 2 28 28 H 1.09002 * 109.47050 * 294.90867 * 4 3 2 29 29 H 1.08996 * 109.35639 * 103.07628 * 5 3 2 30 30 H 1.08994 * 109.35850 * 222.66655 * 5 3 2 31 31 H 1.08999 * 109.46946 * 299.99923 * 10 8 6 32 32 H 1.08995 * 109.47009 * 59.99754 * 10 8 6 33 33 H 1.08998 * 109.46935 * 180.02562 * 10 8 6 34 34 H 1.00903 * 111.00320 * 81.04439 * 11 8 6 35 35 H 1.09000 * 109.47140 * 299.99689 * 12 11 8 36 36 H 1.08998 * 109.46815 * 59.99481 * 12 11 8 37 37 H 0.96995 * 120.00075 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.48586 * 172.81177 * 21 6 5 39 39 H 1.09007 * 109.64264 * 52.28177 * 21 6 5 40 40 H 1.08997 * 109.35895 * 283.06902 * 22 2 1 41 41 H 1.08998 * 109.36264 * 42.80017 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2695 2.3915 0.0105 5 6 3.6060 1.3032 -0.0102 6 6 4.2794 -0.0073 0.4030 7 1 4.1056 -0.1901 1.4634 8 6 5.7825 0.0789 0.1311 9 1 5.9502 0.2523 -0.9318 10 6 6.4517 -1.2334 0.5450 11 7 6.3574 1.1874 0.9048 12 6 7.5860 1.6881 0.2741 13 6 8.1452 2.8224 1.0938 14 1 7.6383 3.1398 1.9931 15 6 9.3032 3.4555 0.6952 16 7 9.9202 3.0692 -0.4001 17 14 9.9960 4.8619 1.7108 18 1 10.3047 4.3782 3.0805 19 1 11.2380 5.3679 1.0734 20 1 8.9961 5.9572 1.7864 21 6 3.6704 -1.1439 -0.4223 22 6 2.2106 -1.3255 -0.0006 23 1 -0.3633 0.0938 1.0234 24 1 -0.3633 0.8393 -0.5929 25 1 -0.3633 -0.9332 -0.4304 26 1 0.5824 2.3584 0.8560 27 1 1.9144 3.2657 0.1003 28 1 0.7010 2.4534 -0.9175 29 1 3.9332 1.5769 -1.0132 30 1 3.8898 2.0909 0.6877 31 1 6.2841 -1.4073 1.6079 32 1 6.0251 -2.0557 -0.0293 33 1 7.5226 -1.1719 0.3517 34 1 6.5280 0.9114 1.8603 35 1 8.3195 0.8838 0.2182 36 1 7.3595 2.0438 -0.7310 37 1 10.7347 3.5149 -0.6808 38 1 4.2229 -2.0648 -0.2361 39 1 3.7172 -0.8930 -1.4821 40 1 2.1747 -1.7541 1.0009 41 1 1.7136 -1.9981 -0.6996 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877483572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:41 Heat of formation + Delta-G solvation = -20.250471 kcal Electronic energy + Delta-G solvation = -17219.900804 eV Core-core repulsion = 14712.371903 eV Total energy + Delta-G solvation = -2507.528900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.28160 -36.34764 -33.48168 -32.23735 -31.29767 -29.31856 -27.22807 -25.87898 -25.60881 -22.63646 -22.38880 -21.03159 -19.65312 -16.65861 -16.35721 -15.03390 -14.76188 -14.64485 -14.45957 -14.04564 -13.70569 -13.45179 -13.04945 -12.95655 -12.31572 -12.25877 -12.12131 -11.71989 -11.66714 -11.64483 -11.58717 -11.23125 -11.05668 -10.74448 -10.72683 -10.67500 -10.22504 -10.11348 -9.77271 -9.66543 -9.10107 -8.44871 -8.28984 -7.17737 -6.00059 -4.01728 2.39908 3.35197 3.38985 3.42173 4.45274 4.81643 4.89097 5.04898 5.19180 5.35595 5.37481 5.48512 5.52770 5.58507 5.61700 5.64744 5.73731 5.77500 5.89352 5.91016 5.96116 6.00729 6.04544 6.08926 6.17164 6.25914 6.34460 6.39319 6.48004 6.60601 6.75539 6.86205 6.91929 7.32816 7.33192 7.50268 7.82958 8.18321 8.46959 8.68744 9.08020 9.63086 11.10976 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.005184 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.503373 B = 5400.023598 C = 6013.327093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.151 4.151 3 C -0.115 4.115 4 C -0.120 4.120 5 C -0.066 4.066 6 C -0.069 4.069 7 H 0.065 0.935 8 C 0.087 3.913 9 H 0.069 0.931 10 C -0.180 4.180 11 N -0.683 5.683 12 C 0.196 3.804 13 C -0.513 4.513 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.118 4.118 22 C -0.073 4.073 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.327 0.673 35 H -0.014 1.014 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -7.745 0.303 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.151 4.151 3 C -0.115 4.115 4 C -0.177 4.177 5 C -0.103 4.103 6 C -0.088 4.088 7 H 0.083 0.917 8 C -0.024 4.024 9 H 0.087 0.913 10 C -0.239 4.239 11 N -0.312 5.312 12 C 0.069 3.931 13 C -0.552 4.552 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.156 4.156 22 C -0.111 4.111 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.003 0.997 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.106 -7.197 -0.114 17.641 hybrid contribution 1.132 0.037 0.648 1.305 sum -14.974 -7.160 0.534 16.607 Atomic orbital electron populations 1.20928 0.93381 1.01727 1.01379 1.20579 0.95022 0.94639 1.04907 1.20953 0.96391 0.94159 0.99962 1.20953 0.99191 0.96431 1.01094 1.20308 0.89230 0.98497 1.02253 1.21087 0.94341 0.94157 0.99243 0.91667 1.21530 0.92764 0.89530 0.98619 0.91311 1.22550 1.01377 0.99068 1.00937 1.60726 1.32999 1.32520 1.04938 1.19545 0.84438 0.93909 0.95227 1.21170 1.07854 1.16425 1.09718 0.92104 1.24978 0.96816 0.97482 0.95265 1.69953 1.18744 1.41900 1.23255 0.86568 0.78206 0.82476 0.80171 1.20322 1.21391 1.20187 1.21702 0.94822 0.99006 1.00105 1.20304 0.95266 0.94504 1.00978 0.92211 0.92011 0.92762 0.92179 0.91964 0.92052 0.91353 0.89641 0.93107 0.92890 0.92599 0.85610 0.99662 0.95637 0.92927 0.91687 0.92051 0.91620 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 8.98 36.01 0.32 -0.85 16 2 C -0.15 -1.86 5.83 -100.94 -0.59 -2.45 16 3 C -0.11 -1.54 5.83 -100.94 -0.59 -2.13 16 4 C -0.12 -1.41 8.55 36.01 0.31 -1.10 16 5 C -0.07 -1.03 4.69 -28.17 -0.13 -1.16 16 6 C -0.07 -1.04 2.00 -90.56 -0.18 -1.22 16 7 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 8 C 0.09 1.52 2.15 -67.71 -0.15 1.37 16 9 H 0.07 1.31 7.80 -51.93 -0.40 0.90 16 10 C -0.18 -2.86 8.85 37.16 0.33 -2.53 16 11 N -0.68 -14.43 5.69 -107.99 -0.61 -15.04 16 12 C 0.20 5.12 5.24 -4.97 -0.03 5.09 16 13 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.12 -1.52 5.12 -26.66 -0.14 -1.65 16 22 C -0.07 -0.85 5.78 -28.18 -0.16 -1.01 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.59 6.32 -51.93 -0.33 0.26 16 25 H 0.05 0.49 7.99 -51.93 -0.41 0.07 16 26 H 0.06 0.64 7.71 -51.93 -0.40 0.24 16 27 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 28 H 0.06 0.65 7.33 -51.93 -0.38 0.27 16 29 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 30 H 0.09 1.48 7.94 -51.93 -0.41 1.07 16 31 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 32 H 0.05 0.72 6.33 -51.93 -0.33 0.39 16 33 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 34 H 0.33 6.75 8.47 -39.29 -0.33 6.42 16 35 H -0.01 -0.40 7.44 -51.93 -0.39 -0.79 16 36 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.06 0.78 6.15 -51.93 -0.32 0.46 16 39 H 0.06 0.81 8.12 -51.92 -0.42 0.39 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -29.22 317.51 -8.96 -38.17 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.42 Total: 2.62 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -1.42 Total: -21.04 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.12 Total: -41.37 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.22 -8.96 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.922 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds