Wall clock time and date at job start Sun Mar 29 2020 22:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29438 * 117.95931 * 2 1 4 4 C 1.50703 * 117.96360 * 0.44984 * 3 2 1 5 5 C 1.50073 * 124.07673 * 180.46944 * 3 2 1 6 6 C 1.53022 * 110.14425 * 342.87170 * 5 3 2 7 7 H 1.08998 * 109.64332 * 289.74885 * 6 5 3 8 8 C 1.52998 * 109.63944 * 169.11762 * 6 5 3 9 9 H 1.08999 * 109.47191 * 299.99888 * 8 6 5 10 10 C 1.53007 * 109.47033 * 180.02562 * 8 6 5 11 11 N 1.46901 * 109.47153 * 60.00292 * 8 6 5 12 12 C 1.46903 * 110.99991 * 204.99815 * 11 8 6 13 13 C 1.50700 * 109.47081 * 179.97438 * 12 11 8 14 14 H 1.07999 * 120.00023 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99961 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00073 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47202 * 59.99545 * 17 15 13 19 19 H 1.48497 * 109.47500 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47035 * 299.99887 * 17 15 13 21 21 C 1.53098 * 108.37580 * 49.42714 * 6 5 3 22 22 C 1.50063 * 117.96102 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47114 * 275.23678 * 1 2 3 24 24 H 1.08994 * 109.47295 * 35.24118 * 1 2 3 25 25 H 1.09001 * 109.47170 * 155.24326 * 1 2 3 26 26 H 1.09001 * 109.47203 * 54.90788 * 4 3 2 27 27 H 1.09000 * 109.47344 * 174.91200 * 4 3 2 28 28 H 1.09002 * 109.47050 * 294.90867 * 4 3 2 29 29 H 1.08996 * 109.35639 * 103.07628 * 5 3 2 30 30 H 1.08994 * 109.35850 * 222.66655 * 5 3 2 31 31 H 1.08999 * 109.46946 * 299.99923 * 10 8 6 32 32 H 1.08995 * 109.47009 * 59.99754 * 10 8 6 33 33 H 1.08998 * 109.46935 * 180.02562 * 10 8 6 34 34 H 1.00903 * 111.00320 * 81.04439 * 11 8 6 35 35 H 1.09000 * 109.47140 * 299.99689 * 12 11 8 36 36 H 1.08998 * 109.46815 * 59.99481 * 12 11 8 37 37 H 0.96995 * 120.00075 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.48586 * 172.81177 * 21 6 5 39 39 H 1.09007 * 109.64264 * 52.28177 * 21 6 5 40 40 H 1.08997 * 109.35895 * 283.06902 * 22 2 1 41 41 H 1.08998 * 109.36264 * 42.80017 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2695 2.3915 0.0105 5 6 3.6060 1.3032 -0.0102 6 6 4.2794 -0.0073 0.4030 7 1 4.1056 -0.1901 1.4634 8 6 5.7825 0.0789 0.1311 9 1 5.9502 0.2523 -0.9318 10 6 6.4517 -1.2334 0.5450 11 7 6.3574 1.1874 0.9048 12 6 7.5860 1.6881 0.2741 13 6 8.1452 2.8224 1.0938 14 1 7.6383 3.1398 1.9931 15 6 9.3032 3.4555 0.6952 16 7 9.9202 3.0692 -0.4001 17 14 9.9960 4.8619 1.7108 18 1 10.3047 4.3782 3.0805 19 1 11.2380 5.3679 1.0734 20 1 8.9961 5.9572 1.7864 21 6 3.6704 -1.1439 -0.4223 22 6 2.2106 -1.3255 -0.0006 23 1 -0.3633 0.0938 1.0234 24 1 -0.3633 0.8393 -0.5929 25 1 -0.3633 -0.9332 -0.4304 26 1 0.5824 2.3584 0.8560 27 1 1.9144 3.2657 0.1003 28 1 0.7010 2.4534 -0.9175 29 1 3.9332 1.5769 -1.0132 30 1 3.8898 2.0909 0.6877 31 1 6.2841 -1.4073 1.6079 32 1 6.0251 -2.0557 -0.0293 33 1 7.5226 -1.1719 0.3517 34 1 6.5280 0.9114 1.8603 35 1 8.3195 0.8838 0.2182 36 1 7.3595 2.0438 -0.7310 37 1 10.7347 3.5149 -0.6808 38 1 4.2229 -2.0648 -0.2361 39 1 3.7172 -0.8930 -1.4821 40 1 2.1747 -1.7541 1.0009 41 1 1.7136 -1.9981 -0.6996 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877483572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:41 Heat of formation + Delta-G solvation = -36.691242 kcal Electronic energy + Delta-G solvation = -17220.613729 eV Core-core repulsion = 14712.371903 eV Total energy + Delta-G solvation = -2508.241826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42391 -37.80785 -35.25435 -33.84135 -32.44195 -30.87214 -28.34635 -27.73202 -26.65353 -24.20959 -23.65160 -22.63448 -21.01596 -18.50264 -17.71108 -16.76021 -16.14116 -15.90960 -15.68347 -15.45758 -15.13790 -14.57117 -14.45264 -14.18455 -13.99055 -13.66602 -13.29793 -13.12659 -12.93476 -12.81518 -12.71208 -12.61573 -12.55068 -12.43685 -12.26207 -12.02386 -11.93860 -11.46727 -11.44102 -10.96464 -10.83221 -10.64050 -9.28269 -8.98721 -8.21744 -6.32937 1.40326 1.40903 1.44015 1.51987 2.40060 3.11301 3.53434 3.75541 3.90107 4.08774 4.25676 4.33231 4.37428 4.50143 4.58237 4.65781 4.69495 4.71089 4.78500 4.81588 4.88953 4.94357 5.05032 5.06018 5.11067 5.12182 5.18915 5.20619 5.24855 5.26919 5.32304 5.41948 5.51278 5.59991 5.64956 5.91886 6.05190 6.31639 6.50901 6.77296 6.93570 7.38190 8.89590 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.005184 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.503373 B = 5400.023598 C = 6013.327093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.142 4.142 3 C -0.142 4.142 4 C -0.116 4.116 5 C -0.061 4.061 6 C -0.060 4.060 7 H 0.068 0.932 8 C 0.085 3.915 9 H 0.046 0.954 10 C -0.172 4.172 11 N -0.680 5.680 12 C 0.214 3.786 13 C -0.535 4.535 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.114 4.114 22 C -0.075 4.075 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.332 0.668 35 H -0.039 1.039 36 H -0.008 1.008 37 H 0.265 0.735 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.553 -8.542 1.386 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.142 4.142 3 C -0.142 4.142 4 C -0.172 4.172 5 C -0.099 4.099 6 C -0.079 4.079 7 H 0.086 0.914 8 C -0.026 4.026 9 H 0.065 0.935 10 C -0.231 4.231 11 N -0.309 5.309 12 C 0.086 3.914 13 C -0.573 4.573 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.796 3.204 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.152 4.152 22 C -0.111 4.111 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.150 0.850 35 H -0.022 1.022 36 H 0.011 0.989 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.814 -8.012 0.977 19.557 hybrid contribution 1.624 0.225 0.270 1.662 sum -16.189 -7.787 1.246 18.008 Atomic orbital electron populations 1.20963 0.91348 1.02819 1.02223 1.20922 0.96594 0.94383 1.02264 1.20892 0.94975 0.95634 1.02722 1.20924 0.98975 0.95130 1.02195 1.20165 0.91480 0.98009 1.00201 1.20985 0.92006 0.95056 0.99825 0.91382 1.21626 0.94766 0.89335 0.96842 0.93520 1.22445 0.99615 0.98748 1.02254 1.60611 1.30288 1.34790 1.05254 1.19141 0.85632 0.92902 0.93743 1.21538 1.08444 1.17242 1.10098 0.91851 1.25945 0.97065 1.00265 0.96392 1.70090 1.19217 1.43320 1.24929 0.85399 0.77477 0.78789 0.78705 1.19055 1.20783 1.19401 1.21671 0.96091 0.98255 0.99165 1.20380 0.94019 0.94557 1.02189 0.91265 0.91511 0.91259 0.90927 0.93360 0.90932 0.93596 0.92296 0.91714 0.90057 0.95092 0.85044 1.02183 0.98940 0.92675 0.90275 0.92741 0.90432 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 8.98 71.24 0.64 -1.31 16 2 C -0.14 -3.13 5.83 -15.09 -0.09 -3.22 16 3 C -0.14 -3.72 5.83 -15.09 -0.09 -3.80 16 4 C -0.12 -2.62 8.55 71.24 0.61 -2.01 16 5 C -0.06 -1.96 4.69 29.66 0.14 -1.82 16 6 C -0.06 -1.77 2.00 -10.75 -0.02 -1.79 16 7 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 8 C 0.08 3.04 2.15 44.92 0.10 3.14 16 9 H 0.05 1.87 7.80 -2.39 -0.02 1.86 16 10 C -0.17 -5.37 8.85 71.98 0.64 -4.73 16 11 N -0.68 -29.83 5.69 -495.56 -2.82 -32.65 16 12 C 0.21 11.76 5.24 85.56 0.45 12.21 16 13 C -0.54 -31.19 9.32 25.60 0.24 -30.95 16 14 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 17 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C -0.11 -2.70 5.12 30.64 0.16 -2.54 16 22 C -0.07 -1.49 5.78 29.66 0.17 -1.32 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.06 6.32 -2.39 -0.02 1.05 16 25 H 0.07 0.96 7.99 -2.39 -0.02 0.95 16 26 H 0.07 1.43 7.71 -2.39 -0.02 1.41 16 27 H 0.05 1.19 7.93 -2.39 -0.02 1.17 16 28 H 0.07 1.44 7.33 -2.39 -0.02 1.42 16 29 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 30 H 0.06 2.15 7.94 -2.39 -0.02 2.13 16 31 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 32 H 0.08 2.07 6.33 -2.39 -0.02 2.05 16 33 H 0.03 1.10 7.45 -2.39 -0.02 1.09 16 34 H 0.33 13.97 8.47 -89.69 -0.76 13.21 16 35 H -0.04 -2.33 7.44 -2.39 -0.02 -2.35 16 36 H -0.01 -0.46 8.05 -2.39 -0.02 -0.48 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.08 1.66 6.15 -2.39 -0.01 1.64 16 39 H 0.05 1.37 8.12 -2.38 -0.02 1.35 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 Total: -1.00 -64.32 317.51 3.11 -61.21 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.22 Total: 19.36 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 3.40 Total: -37.61 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -2.54 Total: -90.03 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.32 3.11 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.518 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds