Wall clock time and date at job start Sun Mar 29 2020 22:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29442 * 117.96156 * 2 1 4 4 C 1.50703 * 117.96205 * 359.50760 * 3 2 1 5 5 C 1.50066 * 124.07678 * 179.53169 * 3 2 1 6 6 C 1.53022 * 110.14873 * 17.12989 * 5 3 2 7 7 H 1.09003 * 109.63811 * 70.46137 * 6 5 3 8 8 C 1.52994 * 109.64769 * 190.88169 * 6 5 3 9 9 H 1.08998 * 109.47828 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47321 * 59.99928 * 8 6 5 11 11 N 1.46910 * 109.46784 * 300.00305 * 8 6 5 12 12 C 1.46905 * 110.99734 * 204.99987 * 11 8 6 13 13 C 1.50699 * 109.47063 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00241 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99546 * 359.97438 * 15 13 12 17 17 Si 1.86788 * 120.00092 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47325 * 90.00067 * 17 15 13 19 19 H 1.48499 * 109.47182 * 209.99791 * 17 15 13 20 20 H 1.48505 * 109.47431 * 329.99898 * 17 15 13 21 21 C 1.53394 * 108.43912 * 310.56711 * 6 5 3 22 22 C 1.50066 * 117.96597 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47150 * 5.26491 * 1 2 3 24 24 H 1.09004 * 109.47148 * 125.26294 * 1 2 3 25 25 H 1.08997 * 109.47385 * 245.26668 * 1 2 3 26 26 H 1.09008 * 109.46842 * 175.20838 * 4 3 2 27 27 H 1.08990 * 109.47638 * 295.21180 * 4 3 2 28 28 H 1.09002 * 109.46952 * 55.21494 * 4 3 2 29 29 H 1.09002 * 109.35722 * 256.92727 * 5 3 2 30 30 H 1.08997 * 109.24973 * 137.26936 * 5 3 2 31 31 H 1.09000 * 109.47518 * 180.02562 * 10 8 6 32 32 H 1.09005 * 109.47010 * 300.00170 * 10 8 6 33 33 H 1.09000 * 109.47236 * 59.99719 * 10 8 6 34 34 H 1.00892 * 111.00183 * 81.04729 * 11 8 6 35 35 H 1.09003 * 109.46931 * 299.99487 * 12 11 8 36 36 H 1.08996 * 109.47261 * 59.99905 * 12 11 8 37 37 H 0.96997 * 119.99935 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.64362 * 187.11520 * 21 6 5 39 39 H 1.08999 * 109.63932 * 307.74880 * 21 6 5 40 40 H 1.09006 * 109.35543 * 317.34403 * 22 2 1 41 41 H 1.09005 * 109.35751 * 77.05620 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2695 2.3916 -0.0114 5 6 3.6060 1.3032 0.0102 6 6 4.2793 -0.0073 -0.4031 7 1 4.1087 -0.1881 -1.4644 8 6 5.7825 0.0787 -0.1313 9 1 6.2593 -0.8558 -0.4270 10 6 6.0179 0.3220 1.3607 11 7 6.3573 1.1874 -0.9050 12 6 7.7872 0.9664 -1.1589 13 6 8.3410 2.1217 -1.9524 14 1 7.6952 2.9383 -2.2396 15 6 9.6718 2.1359 -2.3125 16 7 10.4581 1.1412 -1.9630 17 14 10.3580 3.5676 -3.2966 18 1 10.8548 4.6140 -2.3674 19 1 11.4766 3.0912 -4.1492 20 1 9.2881 4.1358 -4.1556 21 6 3.6704 -1.1473 0.4231 22 6 2.2107 -1.3254 -0.0006 23 1 -0.3633 1.0233 -0.0943 24 1 -0.3634 -0.5933 -0.8391 25 1 -0.3634 -0.4299 0.9333 26 1 1.9136 3.2667 0.0758 27 1 0.7105 2.4436 -0.9456 28 1 0.5740 2.3674 0.8275 29 1 3.9332 1.5768 1.0133 30 1 3.8878 2.0904 -0.6891 31 1 7.0888 0.3838 1.5543 32 1 5.5412 1.2568 1.6561 33 1 5.5914 -0.5005 1.9348 34 1 6.2048 2.0699 -0.4402 35 1 8.3174 0.8909 -0.2095 36 1 7.9176 0.0425 -1.7224 37 1 11.3945 1.1513 -2.2160 38 1 4.2210 -2.0693 0.2370 39 1 3.7167 -0.8968 1.4829 40 1 1.7121 -1.9995 0.6960 41 1 2.1767 -1.7521 -1.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877483573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:43 Heat of formation + Delta-G solvation = -15.741187 kcal Electronic energy + Delta-G solvation = -17239.230461 eV Core-core repulsion = 14731.897097 eV Total energy + Delta-G solvation = -2507.333363 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43669 -36.38712 -33.51792 -32.30339 -31.29592 -29.11800 -27.03975 -25.98511 -25.87567 -23.17005 -22.40563 -21.12148 -19.08823 -16.78901 -16.33205 -15.14896 -14.82908 -14.54558 -14.48755 -14.16918 -13.68599 -13.58928 -13.45424 -12.77655 -12.54256 -12.10696 -12.02397 -11.93064 -11.86352 -11.60167 -11.49387 -11.27517 -11.10494 -10.75317 -10.71549 -10.56177 -10.21103 -10.11601 -9.84976 -9.63984 -9.08192 -8.45556 -8.33127 -7.18406 -6.00110 -4.01633 2.32874 3.33420 3.39467 3.44250 4.45520 4.77426 4.86697 5.02259 5.20362 5.33049 5.35787 5.41335 5.47813 5.49716 5.57698 5.60452 5.67008 5.77684 5.80009 5.90752 5.91095 5.95913 5.99694 6.03034 6.10137 6.22033 6.29404 6.37491 6.45395 6.55554 6.63403 6.82266 6.91657 7.24033 7.33866 7.50144 7.83345 8.18410 8.47170 8.69073 9.08298 9.63155 11.11008 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037536 B = 0.004897 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.765401 B = 5716.874510 C = 6139.291760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 C -0.118 4.118 4 C -0.120 4.120 5 C -0.078 4.078 6 C -0.071 4.071 7 H 0.074 0.926 8 C 0.087 3.913 9 H 0.069 0.931 10 C -0.183 4.183 11 N -0.684 5.684 12 C 0.194 3.806 13 C -0.512 4.512 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.116 4.116 22 C -0.076 4.076 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.327 0.673 35 H -0.014 1.014 36 H 0.026 0.974 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.460 -2.534 6.191 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C -0.118 4.118 4 C -0.176 4.176 5 C -0.114 4.114 6 C -0.090 4.090 7 H 0.093 0.907 8 C -0.024 4.024 9 H 0.088 0.912 10 C -0.241 4.241 11 N -0.313 5.313 12 C 0.067 3.933 13 C -0.551 4.551 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.154 4.154 22 C -0.113 4.113 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.144 0.856 35 H 0.004 0.996 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.463 -2.848 5.543 18.542 hybrid contribution 0.910 0.842 0.369 1.294 sum -16.553 -2.006 5.912 17.691 Atomic orbital electron populations 1.21051 0.93340 1.02528 1.01330 1.20596 0.95095 0.94685 1.04019 1.20840 0.96006 0.94185 1.00726 1.20957 0.99128 0.96230 1.01295 1.20501 0.90313 0.98862 1.01748 1.21174 0.94184 0.93770 0.99853 0.90729 1.21502 0.93682 0.96540 0.90652 0.91245 1.22602 1.01713 1.01191 0.98632 1.60740 1.19142 1.02913 1.48499 1.19566 0.81303 0.97507 0.94900 1.21211 0.94065 1.05798 1.34037 0.92055 1.24986 0.97019 0.96269 0.96325 1.69965 1.05723 1.31309 1.46845 0.86504 0.78598 0.82323 0.80015 1.20776 1.21278 1.19788 1.21707 0.94749 0.98890 1.00012 1.20300 0.95285 0.94506 1.01235 0.91496 0.92325 0.92342 0.92218 0.91872 0.92128 0.91093 0.90257 0.92701 0.92736 0.92961 0.85574 0.99603 0.95607 0.92984 0.91911 0.91895 0.91863 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.63 36.00 0.35 -0.87 16 2 C -0.14 -1.71 5.84 -100.94 -0.59 -2.30 16 3 C -0.12 -1.48 5.84 -100.94 -0.59 -2.07 16 4 C -0.12 -1.27 8.35 36.01 0.30 -0.97 16 5 C -0.08 -1.09 4.39 -28.18 -0.12 -1.21 16 6 C -0.07 -1.06 2.27 -90.41 -0.21 -1.27 16 7 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 8 C 0.09 1.54 2.45 -67.71 -0.17 1.37 16 9 H 0.07 1.32 7.80 -51.93 -0.40 0.92 16 10 C -0.18 -2.90 8.47 37.16 0.31 -2.58 16 11 N -0.68 -14.60 5.84 -107.99 -0.63 -15.23 16 12 C 0.19 5.12 5.24 -4.97 -0.03 5.10 16 13 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 14 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.12 -1.47 4.68 -26.51 -0.12 -1.59 16 22 C -0.08 -0.88 5.82 -28.17 -0.16 -1.04 16 23 H 0.07 0.60 5.21 -51.93 -0.27 0.33 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.63 7.93 -51.92 -0.41 0.22 16 27 H 0.06 0.63 7.70 -51.93 -0.40 0.23 16 28 H 0.06 0.57 7.31 -51.93 -0.38 0.19 16 29 H 0.07 0.98 5.92 -51.93 -0.31 0.67 16 30 H 0.08 1.21 7.81 -51.93 -0.41 0.81 16 31 H 0.05 0.97 7.45 -51.93 -0.39 0.59 16 32 H 0.05 0.81 6.20 -51.93 -0.32 0.49 16 33 H 0.05 0.72 6.60 -51.93 -0.34 0.38 16 34 H 0.33 6.74 8.00 -39.30 -0.31 6.42 16 35 H -0.01 -0.39 7.44 -51.93 -0.39 -0.77 16 36 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.79 6.85 -51.93 -0.36 0.43 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 312.97 15.07 4.72 4.72 Total: -1.00 -29.62 312.97 -8.83 -38.45 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.19 Total: 2.54 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -1.44 Total: -20.94 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.11 Total: -41.65 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.62 -8.83 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.705 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds