Wall clock time and date at job start Sun Mar 29 2020 22:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29442 * 117.96156 * 2 1 4 4 C 1.50703 * 117.96205 * 359.50760 * 3 2 1 5 5 C 1.50066 * 124.07678 * 179.53169 * 3 2 1 6 6 C 1.53022 * 110.14873 * 17.12989 * 5 3 2 7 7 H 1.09003 * 109.63811 * 70.46137 * 6 5 3 8 8 C 1.52994 * 109.64769 * 190.88169 * 6 5 3 9 9 H 1.08998 * 109.47828 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47321 * 59.99928 * 8 6 5 11 11 N 1.46910 * 109.46784 * 300.00305 * 8 6 5 12 12 C 1.46905 * 110.99734 * 204.99987 * 11 8 6 13 13 C 1.50699 * 109.47063 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00241 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99546 * 359.97438 * 15 13 12 17 17 Si 1.86788 * 120.00092 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47325 * 90.00067 * 17 15 13 19 19 H 1.48499 * 109.47182 * 209.99791 * 17 15 13 20 20 H 1.48505 * 109.47431 * 329.99898 * 17 15 13 21 21 C 1.53394 * 108.43912 * 310.56711 * 6 5 3 22 22 C 1.50066 * 117.96597 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47150 * 5.26491 * 1 2 3 24 24 H 1.09004 * 109.47148 * 125.26294 * 1 2 3 25 25 H 1.08997 * 109.47385 * 245.26668 * 1 2 3 26 26 H 1.09008 * 109.46842 * 175.20838 * 4 3 2 27 27 H 1.08990 * 109.47638 * 295.21180 * 4 3 2 28 28 H 1.09002 * 109.46952 * 55.21494 * 4 3 2 29 29 H 1.09002 * 109.35722 * 256.92727 * 5 3 2 30 30 H 1.08997 * 109.24973 * 137.26936 * 5 3 2 31 31 H 1.09000 * 109.47518 * 180.02562 * 10 8 6 32 32 H 1.09005 * 109.47010 * 300.00170 * 10 8 6 33 33 H 1.09000 * 109.47236 * 59.99719 * 10 8 6 34 34 H 1.00892 * 111.00183 * 81.04729 * 11 8 6 35 35 H 1.09003 * 109.46931 * 299.99487 * 12 11 8 36 36 H 1.08996 * 109.47261 * 59.99905 * 12 11 8 37 37 H 0.96997 * 119.99935 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.64362 * 187.11520 * 21 6 5 39 39 H 1.08999 * 109.63932 * 307.74880 * 21 6 5 40 40 H 1.09006 * 109.35543 * 317.34403 * 22 2 1 41 41 H 1.09005 * 109.35751 * 77.05620 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2695 2.3916 -0.0114 5 6 3.6060 1.3032 0.0102 6 6 4.2793 -0.0073 -0.4031 7 1 4.1087 -0.1881 -1.4644 8 6 5.7825 0.0787 -0.1313 9 1 6.2593 -0.8558 -0.4270 10 6 6.0179 0.3220 1.3607 11 7 6.3573 1.1874 -0.9050 12 6 7.7872 0.9664 -1.1589 13 6 8.3410 2.1217 -1.9524 14 1 7.6952 2.9383 -2.2396 15 6 9.6718 2.1359 -2.3125 16 7 10.4581 1.1412 -1.9630 17 14 10.3580 3.5676 -3.2966 18 1 10.8548 4.6140 -2.3674 19 1 11.4766 3.0912 -4.1492 20 1 9.2881 4.1358 -4.1556 21 6 3.6704 -1.1473 0.4231 22 6 2.2107 -1.3254 -0.0006 23 1 -0.3633 1.0233 -0.0943 24 1 -0.3634 -0.5933 -0.8391 25 1 -0.3634 -0.4299 0.9333 26 1 1.9136 3.2667 0.0758 27 1 0.7105 2.4436 -0.9456 28 1 0.5740 2.3674 0.8275 29 1 3.9332 1.5768 1.0133 30 1 3.8878 2.0904 -0.6891 31 1 7.0888 0.3838 1.5543 32 1 5.5412 1.2568 1.6561 33 1 5.5914 -0.5005 1.9348 34 1 6.2048 2.0699 -0.4402 35 1 8.3174 0.8909 -0.2095 36 1 7.9176 0.0425 -1.7224 37 1 11.3945 1.1513 -2.2160 38 1 4.2210 -2.0693 0.2370 39 1 3.7167 -0.8968 1.4829 40 1 1.7121 -1.9995 0.6960 41 1 2.1767 -1.7521 -1.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877483573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:43 Heat of formation + Delta-G solvation = -32.594431 kcal Electronic energy + Delta-G solvation = -17239.961272 eV Core-core repulsion = 14731.897097 eV Total energy + Delta-G solvation = -2508.064175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55392 -37.80407 -35.28288 -33.85917 -32.49008 -30.59060 -28.11064 -27.78393 -26.97534 -24.39021 -23.97860 -22.67602 -20.42820 -18.51684 -17.79295 -16.78989 -16.09120 -15.91523 -15.75766 -15.46953 -15.06836 -14.75404 -14.66460 -14.34985 -13.70525 -13.50559 -13.36059 -13.21798 -13.09059 -12.93213 -12.66360 -12.60472 -12.51842 -12.38658 -12.24950 -11.96826 -11.82252 -11.47994 -11.37040 -11.02880 -10.77479 -10.66111 -9.25683 -9.01084 -8.22174 -6.33324 1.40371 1.40542 1.42338 1.54163 2.40060 3.10928 3.54845 3.81118 3.84468 4.08593 4.21763 4.29145 4.41076 4.45571 4.54366 4.62510 4.68623 4.72129 4.75082 4.86505 4.89915 4.96661 5.01640 5.04541 5.09010 5.13676 5.16609 5.20059 5.23290 5.27287 5.32397 5.41407 5.43216 5.60521 5.65960 5.92457 6.04947 6.30802 6.50204 6.77126 6.93284 7.37798 8.89421 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.037536 B = 0.004897 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.765401 B = 5716.874510 C = 6139.291760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.143 4.143 3 C -0.138 4.138 4 C -0.116 4.116 5 C -0.072 4.072 6 C -0.062 4.062 7 H 0.054 0.946 8 C 0.085 3.915 9 H 0.049 0.951 10 C -0.173 4.173 11 N -0.682 5.682 12 C 0.211 3.789 13 C -0.535 4.535 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.265 1.265 21 C -0.111 4.111 22 C -0.077 4.077 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.333 0.667 35 H -0.038 1.038 36 H -0.006 1.006 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.187 -1.887 6.552 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C -0.138 4.138 4 C -0.172 4.172 5 C -0.109 4.109 6 C -0.081 4.081 7 H 0.072 0.928 8 C -0.025 4.025 9 H 0.067 0.933 10 C -0.231 4.231 11 N -0.312 5.312 12 C 0.083 3.917 13 C -0.573 4.573 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.189 1.189 21 C -0.149 4.149 22 C -0.114 4.114 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.151 0.849 35 H -0.021 1.021 36 H 0.012 0.988 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.216 -2.203 5.917 20.227 hybrid contribution 1.426 0.562 0.272 1.557 sum -17.790 -1.640 6.189 18.908 Atomic orbital electron populations 1.21077 0.91487 1.03321 1.02252 1.20875 0.96557 0.94362 1.02552 1.20883 0.95080 0.95514 1.02346 1.20940 0.99052 0.95083 1.02174 1.20398 0.91823 0.97405 1.01294 1.21039 0.92110 0.95790 0.99211 0.92770 1.21597 0.95234 0.94176 0.91535 0.93270 1.22483 1.00384 1.02951 0.97312 1.60631 1.15954 1.04427 1.50168 1.19183 0.83943 0.95597 0.93000 1.21567 0.94735 1.06395 1.34626 0.91867 1.25958 0.97300 0.99211 0.97258 1.70097 1.06187 1.33387 1.47866 0.85330 0.77867 0.78622 0.78457 1.19599 1.20710 1.18929 1.21672 0.95655 0.97734 0.99838 1.20340 0.94312 0.94988 1.01766 0.90809 0.91668 0.91085 0.92612 0.91355 0.90660 0.90807 0.92048 0.95121 0.91416 0.90374 0.84920 1.02053 0.98821 0.92657 0.91730 0.91122 0.89805 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.63 71.23 0.69 -1.35 16 2 C -0.14 -3.07 5.84 -15.10 -0.09 -3.16 16 3 C -0.14 -3.26 5.84 -15.10 -0.09 -3.34 16 4 C -0.12 -2.24 8.35 71.24 0.60 -1.65 16 5 C -0.07 -1.99 4.39 29.66 0.13 -1.86 16 6 C -0.06 -1.86 2.27 -10.66 -0.02 -1.89 16 7 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 8 C 0.08 3.06 2.45 44.91 0.11 3.17 16 9 H 0.05 1.96 7.80 -2.39 -0.02 1.94 16 10 C -0.17 -5.45 8.47 71.98 0.61 -4.84 16 11 N -0.68 -30.11 5.84 -495.56 -2.89 -33.00 16 12 C 0.21 11.63 5.24 85.56 0.45 12.08 16 13 C -0.54 -31.27 9.32 25.60 0.24 -31.03 16 14 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 15 C 0.00 0.04 5.46 84.66 0.46 0.50 16 16 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 17 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 21 C -0.11 -2.65 4.68 30.74 0.14 -2.51 16 22 C -0.08 -1.60 5.82 29.66 0.17 -1.43 16 23 H 0.07 1.10 5.21 -2.39 -0.01 1.09 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 1.10 7.93 -2.38 -0.02 1.08 16 27 H 0.07 1.24 7.70 -2.39 -0.02 1.22 16 28 H 0.07 1.22 7.31 -2.39 -0.02 1.20 16 29 H 0.07 1.95 5.92 -2.39 -0.01 1.94 16 30 H 0.06 1.88 7.81 -2.39 -0.02 1.86 16 31 H 0.03 1.10 7.45 -2.39 -0.02 1.08 16 32 H 0.07 1.95 6.20 -2.38 -0.01 1.94 16 33 H 0.08 2.05 6.60 -2.39 -0.02 2.04 16 34 H 0.33 14.02 8.00 -89.70 -0.72 13.30 16 35 H -0.04 -2.25 7.44 -2.39 -0.02 -2.27 16 36 H -0.01 -0.38 8.05 -2.39 -0.02 -0.40 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.59 6.85 -2.39 -0.02 1.58 16 40 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -64.34 312.97 3.09 -61.26 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.27 Total: 19.30 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 3.40 Total: -37.30 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -2.61 Total: -90.32 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.34 3.09 -61.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877483573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.662 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds