Wall clock time and date at job start Sun Mar 29 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99553 * 2 1 4 4 N 1.46902 * 109.46846 * 125.00188 * 3 2 1 5 5 C 1.46899 * 110.99819 * 199.62337 * 4 3 2 6 6 C 1.50694 * 109.47529 * 66.69302 * 5 4 3 7 7 H 1.08004 * 119.99972 * 5.18323 * 6 5 4 8 8 C 1.37875 * 120.00244 * 185.18097 * 6 5 4 9 9 N 1.31515 * 120.00215 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99968 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47333 * 60.00355 * 10 8 6 12 12 H 1.48500 * 109.46873 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47221 * 299.99972 * 10 8 6 14 14 C 1.46891 * 111.00327 * 75.66329 * 4 3 2 15 15 C 1.53005 * 109.47598 * 203.48120 * 14 4 3 16 16 C 1.53005 * 110.01097 * 52.21023 * 15 14 4 17 17 C 1.54267 * 110.03056 * 290.77383 * 15 14 4 18 18 C 1.54888 * 104.19410 * 217.10415 * 17 15 14 19 19 C 1.54890 * 102.75134 * 37.93896 * 18 17 15 20 20 C 1.53866 * 110.03281 * 173.60389 * 15 14 4 21 21 H 1.07995 * 120.00303 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.99846 * 179.97438 * 1 2 3 23 23 H 1.07995 * 119.99789 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47355 * 5.00064 * 3 2 1 25 25 H 1.09001 * 109.46818 * 244.99412 * 3 2 1 26 26 H 1.09000 * 109.47274 * 186.69941 * 5 4 3 27 27 H 1.09006 * 109.46837 * 306.69649 * 5 4 3 28 28 H 0.96998 * 119.99896 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.47215 * 323.48483 * 14 4 3 30 30 H 1.09003 * 109.46828 * 83.48378 * 14 4 3 31 31 H 1.09004 * 109.46561 * 63.88535 * 16 15 14 32 32 H 1.09000 * 109.46212 * 183.87917 * 16 15 14 33 33 H 1.08993 * 109.47364 * 303.88404 * 16 15 14 34 34 H 1.09000 * 110.48997 * 335.77954 * 17 15 14 35 35 H 1.09000 * 110.48791 * 98.42140 * 17 15 14 36 36 H 1.09010 * 110.75134 * 279.62784 * 18 17 15 37 37 H 1.08992 * 110.75901 * 156.26181 * 18 17 15 38 38 H 1.08995 * 110.48820 * 203.38177 * 19 18 17 39 39 H 1.09000 * 110.59362 * 80.79210 * 19 18 17 40 40 H 1.08999 * 110.03386 * 238.56721 * 20 15 14 41 41 H 1.09003 * 110.03847 * 359.95243 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.3988 2.7085 1.4526 6 6 2.2074 3.4741 1.9677 7 1 1.2681 2.9662 2.1298 8 6 2.3163 4.8229 2.2320 9 7 3.4599 5.4415 2.0342 10 14 0.8396 5.7716 2.8712 11 1 0.3972 5.1876 4.1629 12 1 1.2149 7.1941 3.0734 13 1 -0.2675 5.6877 1.8849 14 6 4.1693 0.4879 0.8717 15 6 4.7997 0.0629 2.1995 16 6 3.7367 -0.5561 3.1095 17 6 5.4452 1.2810 2.8918 18 6 6.7275 0.7103 3.5468 19 6 7.2242 -0.3107 2.4932 20 6 5.9307 -0.9491 1.9460 21 1 -0.5400 0.9352 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3585 2.1317 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 4.1776 2.6924 2.2150 27 1 3.7805 3.1924 0.5535 28 1 3.5364 6.3905 2.2198 29 1 3.8624 -0.3977 0.3154 30 1 4.8977 1.0498 0.2871 31 1 3.3541 -1.4687 2.6525 32 1 4.1797 -0.7923 4.0770 33 1 2.9194 0.1517 3.2471 34 1 5.6996 2.0462 2.1585 35 1 4.7769 1.6866 3.6514 36 1 6.4919 0.2114 4.4870 37 1 7.4659 1.4971 3.7003 38 1 7.8541 -1.0667 2.9619 39 1 7.7670 0.1955 1.6949 40 1 5.7229 -1.8809 2.4720 41 1 6.0301 -1.1382 0.8771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877544927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:29 Heat of formation + Delta-G solvation = 8.874847 kcal Electronic energy + Delta-G solvation = -17927.721633 eV Core-core repulsion = 15421.455701 eV Total energy + Delta-G solvation = -2506.265932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.02407 -36.24419 -33.12483 -32.34142 -30.62342 -28.50725 -27.14002 -26.16803 -24.33953 -23.37924 -20.58294 -20.13860 -19.15044 -18.10584 -16.25103 -15.31558 -15.22991 -14.74701 -14.40415 -13.75440 -13.74243 -13.24897 -12.88283 -12.50635 -12.25317 -12.05222 -11.76159 -11.66393 -11.21667 -11.00460 -10.80136 -10.75833 -10.73690 -10.50943 -10.19924 -10.10577 -9.97509 -9.92168 -9.89172 -9.58029 -9.05257 -8.79959 -8.33376 -7.11837 -5.98296 -3.98096 2.79836 3.35031 3.39265 3.42402 4.46116 4.89161 5.05128 5.07564 5.26795 5.36760 5.50993 5.69104 5.72229 5.77660 5.85181 5.93955 5.99185 6.06563 6.11453 6.15879 6.19915 6.23772 6.32444 6.34735 6.42082 6.55725 6.63604 6.68874 6.72450 6.89840 6.95631 7.10262 7.15086 7.33350 7.43020 7.44646 7.87774 8.19589 8.28327 8.63875 9.10072 9.65173 11.12121 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.008917 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.507608 B = 3139.310109 C = 4219.039890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C 0.082 3.918 4 N -0.527 5.527 5 C 0.172 3.828 6 C -0.504 4.504 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.066 3.934 15 C -0.053 4.053 16 C -0.124 4.124 17 C -0.110 4.110 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.116 4.116 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.025 0.975 26 H 0.057 0.943 27 H -0.012 1.012 28 H 0.260 0.740 29 H 0.054 0.946 30 H 0.025 0.975 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -11.312 -0.906 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.145 4.145 3 C -0.046 4.046 4 N -0.250 5.250 5 C 0.047 3.953 6 C -0.543 4.543 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.063 4.063 15 C -0.054 4.054 16 C -0.181 4.181 17 C -0.147 4.147 18 C -0.165 4.165 19 C -0.160 4.160 20 C -0.154 4.154 21 H 0.113 0.887 22 H 0.106 0.894 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.006 0.994 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.964 -11.303 -0.485 11.695 hybrid contribution -0.330 0.922 -0.413 1.063 sum 2.634 -10.381 -0.899 10.747 Atomic orbital electron populations 1.23674 0.95996 1.01063 1.03586 1.22996 0.95784 0.98516 0.97182 1.21178 0.96210 0.95306 0.91898 1.62093 1.13017 1.13970 1.35961 1.20244 0.97444 0.81466 0.96112 1.21156 0.97449 0.92944 1.42759 0.92088 1.24957 0.95873 0.97685 0.96037 1.69944 1.24347 1.10187 1.49396 0.86639 0.82993 0.78728 0.79499 1.20241 1.21465 1.20414 1.22178 0.92596 0.96503 0.95024 1.21072 0.94200 0.94522 0.95578 1.21722 0.99148 1.00147 0.97071 1.22668 0.95385 0.96761 0.99910 1.22555 0.98103 0.97974 0.97903 1.22326 0.97039 0.98145 0.98503 1.22271 0.94651 0.98197 1.00259 0.88692 0.89447 0.88563 0.89202 0.95695 0.92525 0.99384 0.93015 0.92733 0.95716 0.94236 0.94386 0.90244 0.90936 0.90666 0.92130 0.92197 0.92586 0.92111 0.92188 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.16 14.32 29.01 0.42 -2.74 16 2 C -0.13 -2.10 9.32 -36.03 -0.34 -2.43 16 3 C 0.08 1.61 5.24 -4.97 -0.03 1.59 16 4 N -0.53 -11.02 3.20 -237.52 -0.76 -11.78 16 5 C 0.17 4.33 4.24 -4.98 -0.02 4.31 16 6 C -0.50 -13.91 8.13 -34.44 -0.28 -14.19 16 7 H 0.06 1.69 7.55 -52.48 -0.40 1.29 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 10 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.07 1.18 3.73 -3.83 -0.01 1.17 16 15 C -0.05 -0.87 0.75 -153.39 -0.11 -0.98 16 16 C -0.12 -2.01 7.97 37.16 0.30 -1.72 16 17 C -0.11 -1.96 3.96 -25.07 -0.10 -2.06 16 18 C -0.13 -1.86 6.91 -24.74 -0.17 -2.03 16 19 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 20 C -0.12 -1.58 6.11 -25.62 -0.16 -1.74 16 21 H 0.09 1.50 7.84 -52.49 -0.41 1.09 16 22 H 0.09 1.15 8.06 -52.49 -0.42 0.72 16 23 H 0.10 1.48 7.31 -52.49 -0.38 1.09 16 24 H 0.09 1.97 6.38 -51.93 -0.33 1.64 16 25 H 0.03 0.48 8.00 -51.93 -0.42 0.07 16 26 H 0.06 1.46 3.65 -51.93 -0.19 1.27 16 27 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.05 0.89 6.79 -51.93 -0.35 0.54 16 30 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.52 7.31 -51.93 -0.38 1.14 16 34 H 0.07 1.45 6.36 -51.93 -0.33 1.12 16 35 H 0.07 1.50 7.26 -51.93 -0.38 1.12 16 36 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 41 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -28.11 315.19 -8.35 -36.46 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.28 Total: 0.74 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -0.78 Total: -21.14 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.02 Total: -37.46 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.11 -8.35 -36.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877544927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.333 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds