Wall clock time and date at job start Sun Mar 29 2020 22:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99553 * 2 1 4 4 N 1.46902 * 109.46846 * 125.00188 * 3 2 1 5 5 C 1.46899 * 110.99819 * 199.62337 * 4 3 2 6 6 C 1.50694 * 109.47529 * 66.69302 * 5 4 3 7 7 H 1.08004 * 119.99972 * 5.18323 * 6 5 4 8 8 C 1.37875 * 120.00244 * 185.18097 * 6 5 4 9 9 N 1.31515 * 120.00215 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99968 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47333 * 60.00355 * 10 8 6 12 12 H 1.48500 * 109.46873 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47221 * 299.99972 * 10 8 6 14 14 C 1.46891 * 111.00327 * 75.66329 * 4 3 2 15 15 C 1.53005 * 109.47598 * 203.48120 * 14 4 3 16 16 C 1.53005 * 110.01097 * 52.21023 * 15 14 4 17 17 C 1.54267 * 110.03056 * 290.77383 * 15 14 4 18 18 C 1.54888 * 104.19410 * 217.10415 * 17 15 14 19 19 C 1.54890 * 102.75134 * 37.93896 * 18 17 15 20 20 C 1.53866 * 110.03281 * 173.60389 * 15 14 4 21 21 H 1.07995 * 120.00303 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.99846 * 179.97438 * 1 2 3 23 23 H 1.07995 * 119.99789 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47355 * 5.00064 * 3 2 1 25 25 H 1.09001 * 109.46818 * 244.99412 * 3 2 1 26 26 H 1.09000 * 109.47274 * 186.69941 * 5 4 3 27 27 H 1.09006 * 109.46837 * 306.69649 * 5 4 3 28 28 H 0.96998 * 119.99896 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.47215 * 323.48483 * 14 4 3 30 30 H 1.09003 * 109.46828 * 83.48378 * 14 4 3 31 31 H 1.09004 * 109.46561 * 63.88535 * 16 15 14 32 32 H 1.09000 * 109.46212 * 183.87917 * 16 15 14 33 33 H 1.08993 * 109.47364 * 303.88404 * 16 15 14 34 34 H 1.09000 * 110.48997 * 335.77954 * 17 15 14 35 35 H 1.09000 * 110.48791 * 98.42140 * 17 15 14 36 36 H 1.09010 * 110.75134 * 279.62784 * 18 17 15 37 37 H 1.08992 * 110.75901 * 156.26181 * 18 17 15 38 38 H 1.08995 * 110.48820 * 203.38177 * 19 18 17 39 39 H 1.09000 * 110.59362 * 80.79210 * 19 18 17 40 40 H 1.08999 * 110.03386 * 238.56721 * 20 15 14 41 41 H 1.09003 * 110.03847 * 359.95243 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.3988 2.7085 1.4526 6 6 2.2074 3.4741 1.9677 7 1 1.2681 2.9662 2.1298 8 6 2.3163 4.8229 2.2320 9 7 3.4599 5.4415 2.0342 10 14 0.8396 5.7716 2.8712 11 1 0.3972 5.1876 4.1629 12 1 1.2149 7.1941 3.0734 13 1 -0.2675 5.6877 1.8849 14 6 4.1693 0.4879 0.8717 15 6 4.7997 0.0629 2.1995 16 6 3.7367 -0.5561 3.1095 17 6 5.4452 1.2810 2.8918 18 6 6.7275 0.7103 3.5468 19 6 7.2242 -0.3107 2.4932 20 6 5.9307 -0.9491 1.9460 21 1 -0.5400 0.9352 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3585 2.1317 0.0896 25 1 2.6213 1.4026 -0.9314 26 1 4.1776 2.6924 2.2150 27 1 3.7805 3.1924 0.5535 28 1 3.5364 6.3905 2.2198 29 1 3.8624 -0.3977 0.3154 30 1 4.8977 1.0498 0.2871 31 1 3.3541 -1.4687 2.6525 32 1 4.1797 -0.7923 4.0770 33 1 2.9194 0.1517 3.2471 34 1 5.6996 2.0462 2.1585 35 1 4.7769 1.6866 3.6514 36 1 6.4919 0.2114 4.4870 37 1 7.4659 1.4971 3.7003 38 1 7.8541 -1.0667 2.9619 39 1 7.7670 0.1955 1.6949 40 1 5.7229 -1.8809 2.4720 41 1 6.0301 -1.1382 0.8771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877544927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:28 Heat of formation + Delta-G solvation = -5.774297 kcal Electronic energy + Delta-G solvation = -17928.356868 eV Core-core repulsion = 15421.455701 eV Total energy + Delta-G solvation = -2506.901166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42238 -37.76728 -34.95667 -33.99065 -32.04810 -29.84205 -29.00086 -27.60237 -25.84094 -25.13289 -22.16878 -21.47546 -20.52153 -19.48914 -18.36848 -16.86082 -16.62177 -16.44814 -15.83390 -15.35099 -15.32544 -14.53281 -14.31282 -14.04133 -13.91836 -13.77010 -13.27528 -13.11703 -12.80593 -12.68401 -12.53488 -12.31521 -12.06776 -11.92394 -11.89935 -11.59293 -11.41868 -11.32480 -11.25566 -11.05790 -10.91484 -10.48422 -10.18857 -8.87858 -8.16566 -6.24206 1.38756 1.41245 1.48699 1.50298 2.40769 3.15497 3.44914 3.75782 3.84519 3.95495 4.15760 4.37819 4.41365 4.47179 4.59179 4.61636 4.62602 4.76108 4.81821 4.89017 4.91864 4.98800 5.06607 5.08141 5.11142 5.19641 5.27499 5.30850 5.35522 5.44474 5.52762 5.54481 5.59997 5.68688 5.78173 5.80552 6.04215 6.16155 6.43439 6.74770 6.92533 7.43755 8.93523 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.008917 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.507608 B = 3139.310109 C = 4219.039890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.139 4.139 3 C 0.082 3.918 4 N -0.526 5.526 5 C 0.187 3.813 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.066 3.934 15 C -0.053 4.053 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.109 4.109 21 H 0.084 0.916 22 H 0.120 0.880 23 H 0.119 0.881 24 H 0.059 0.941 25 H 0.022 0.978 26 H 0.049 0.951 27 H -0.053 1.053 28 H 0.262 0.738 29 H 0.079 0.921 30 H 0.008 0.992 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -13.746 -0.490 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.157 4.157 3 C -0.046 4.046 4 N -0.249 5.249 5 C 0.061 3.939 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.195 1.195 14 C -0.063 4.063 15 C -0.053 4.053 16 C -0.173 4.173 17 C -0.148 4.148 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.147 4.147 21 H 0.103 0.897 22 H 0.138 0.862 23 H 0.136 0.864 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.066 0.934 27 H -0.035 1.035 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.027 0.973 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.538 -13.758 -0.076 13.990 hybrid contribution -0.221 1.687 -0.572 1.795 sum 2.317 -12.071 -0.649 12.308 Atomic orbital electron populations 1.23892 0.95596 1.02152 1.01031 1.22849 0.96147 0.97315 0.99430 1.21143 0.95614 0.96532 0.91285 1.62084 1.14349 1.11567 1.36930 1.19931 0.96435 0.83602 0.93901 1.21435 0.97836 0.93598 1.42615 0.92577 1.25810 0.98735 0.98717 0.96239 1.70077 1.26416 1.10475 1.50432 0.85579 0.79504 0.77296 0.79111 1.19457 1.20915 1.19548 1.22299 0.91185 0.96392 0.96376 1.21112 0.95269 0.94616 0.94340 1.21621 0.97927 0.99831 0.97943 1.22524 0.96873 0.96837 0.98596 1.22529 0.96176 0.98517 0.98793 1.22318 0.97122 0.98135 0.97914 1.22231 0.93311 0.97867 1.01291 0.89734 0.86162 0.86363 0.92271 0.95965 0.93358 1.03485 0.92938 0.90250 0.97338 0.92316 0.93001 0.93734 0.94349 0.93919 0.90808 0.92180 0.89800 0.92333 0.90080 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.41 14.32 67.77 0.97 -4.43 16 2 C -0.14 -4.41 9.32 25.64 0.24 -4.17 16 3 C 0.08 3.31 5.24 85.56 0.45 3.75 16 4 N -0.53 -22.74 3.20 -905.38 -2.89 -25.64 16 5 C 0.19 10.02 4.24 85.56 0.36 10.38 16 6 C -0.52 -29.70 8.13 25.60 0.21 -29.49 16 7 H 0.06 3.21 7.55 -2.91 -0.02 3.19 16 8 C 0.00 0.15 5.46 84.65 0.46 0.62 16 9 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 10 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 C 0.07 2.36 3.73 86.31 0.32 2.69 16 15 C -0.05 -1.69 0.75 -51.46 -0.04 -1.72 16 16 C -0.12 -3.60 7.97 71.98 0.57 -3.03 16 17 C -0.11 -4.07 3.96 31.67 0.13 -3.95 16 18 C -0.12 -3.44 6.91 31.88 0.22 -3.22 16 19 C -0.12 -2.75 6.83 31.67 0.22 -2.53 16 20 C -0.11 -2.65 6.11 31.32 0.19 -2.46 16 21 H 0.08 2.59 7.84 -2.91 -0.02 2.57 16 22 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 23 H 0.12 3.26 7.31 -2.91 -0.02 3.23 16 24 H 0.06 2.71 6.38 -2.39 -0.02 2.70 16 25 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 26 H 0.05 2.67 3.65 -2.39 -0.01 2.66 16 27 H -0.05 -3.17 8.12 -2.38 -0.02 -3.19 16 28 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.08 2.46 6.79 -2.39 -0.02 2.44 16 30 H 0.01 0.33 7.77 -2.39 -0.02 0.31 16 31 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.69 7.31 -2.39 -0.02 1.67 16 34 H 0.04 1.64 6.36 -2.39 -0.02 1.63 16 35 H 0.04 1.80 7.26 -2.39 -0.02 1.78 16 36 H 0.07 1.88 8.14 -2.38 -0.02 1.87 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.68 7.67 -2.39 -0.02 1.66 16 41 H 0.07 1.52 7.67 -2.39 -0.02 1.51 16 Total: -1.00 -63.36 315.19 4.68 -58.68 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.96 Total: 13.88 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 4.30 Total: -37.57 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -2.61 Total: -82.28 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -63.36 4.68 -58.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877544927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.903 kcal (2) G-P(sol) polarization free energy of solvation -63.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds