Wall clock time and date at job start Sun Mar 29 2020 21:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99882 * 2 1 4 4 H 1.48498 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47475 * 300.00300 * 3 2 1 6 6 H 1.48506 * 109.47455 * 60.00062 * 3 2 1 7 7 C 1.37869 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46880 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99620 * 190.00363 * 10 9 7 12 12 C 1.53002 * 109.47178 * 71.94056 * 11 10 9 13 13 C 1.53000 * 109.46722 * 174.78782 * 12 11 10 14 14 C 1.52998 * 109.46990 * 179.97438 * 13 12 11 15 15 C 1.52998 * 117.50245 * 243.75058 * 14 13 12 16 16 C 1.52999 * 117.50125 * 175.08812 * 14 13 12 17 17 C 1.46890 * 111.00314 * 66.04743 * 10 9 7 18 18 C 1.53009 * 109.47203 * 199.41660 * 17 10 9 19 19 C 1.53003 * 117.49625 * 243.51185 * 18 17 10 20 20 C 1.52994 * 117.49750 * 174.89168 * 18 17 10 21 21 H 0.97002 * 120.00276 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47062 * 60.00427 * 9 7 2 23 23 H 1.09004 * 109.47096 * 300.00347 * 9 7 2 24 24 H 1.09003 * 109.46984 * 191.93850 * 11 10 9 25 25 H 1.09000 * 109.47353 * 311.93966 * 11 10 9 26 26 H 1.08993 * 109.47390 * 294.79027 * 12 11 10 27 27 H 1.09002 * 109.47155 * 54.79568 * 12 11 10 28 28 H 1.08997 * 109.47776 * 299.99961 * 13 12 11 29 29 H 1.09000 * 109.47174 * 60.00544 * 13 12 11 30 30 H 1.09005 * 115.55148 * 29.41975 * 14 13 12 31 31 H 1.08997 * 117.49894 * 359.97438 * 15 14 13 32 32 H 1.08998 * 117.50096 * 145.02400 * 15 14 13 33 33 H 1.09005 * 117.50203 * 214.98069 * 16 14 13 34 34 H 1.09003 * 117.49754 * 0.02562 * 16 14 13 35 35 H 1.08993 * 109.47333 * 79.41378 * 17 10 9 36 36 H 1.09001 * 109.46979 * 319.40991 * 17 10 9 37 37 H 1.08992 * 115.54688 * 29.21564 * 18 17 10 38 38 H 1.09004 * 117.49961 * 359.97438 * 19 18 17 39 39 H 1.08998 * 117.49653 * 145.01387 * 19 18 17 40 40 H 1.09003 * 117.49622 * 214.97234 * 20 18 17 41 41 H 1.08996 * 117.50333 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5211 -4.8935 -0.2388 12 6 1.0732 -4.9675 -1.6999 13 6 0.4770 -6.3482 -1.9812 14 6 0.0286 -6.4221 -3.4421 15 6 -1.4653 -6.6096 -3.7140 16 6 -0.4921 -7.7665 -3.9542 17 6 2.9709 -3.6540 1.2527 18 6 4.2446 -4.4766 1.0475 19 6 4.3936 -5.7632 1.8621 20 6 5.2410 -4.5369 2.2069 21 1 -0.4851 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6245 -2.5570 0.8897 24 1 2.2034 -5.7164 -0.0258 25 1 0.6499 -4.9659 0.4123 26 1 0.3211 -4.2016 -1.8887 27 1 1.9312 -4.8027 -2.3517 28 1 1.2292 -7.1142 -1.7925 29 1 -0.3810 -6.5131 -1.3295 30 1 0.5931 -5.8025 -4.1391 31 1 -2.1286 -6.6808 -2.8521 32 1 -1.8835 -6.1139 -4.5900 33 1 -0.2705 -8.0313 -4.9881 34 1 -0.5156 -8.5983 -3.2501 35 1 2.3649 -4.1116 2.0346 36 1 3.2374 -2.6389 1.5468 37 1 4.6495 -4.4715 0.0356 38 1 3.5844 -6.0234 2.5445 39 1 4.8965 -6.6049 1.3860 40 1 6.3016 -4.5719 1.9578 41 1 4.9894 -3.9903 3.1158 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878159415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:36 Heat of formation + Delta-G solvation = 32.021092 kcal Electronic energy + Delta-G solvation = -16847.364581 eV Core-core repulsion = 14342.102346 eV Total energy + Delta-G solvation = -2505.262235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.06122 -37.41727 -35.61318 -32.83567 -31.74411 -27.41024 -26.81568 -24.04589 -22.37465 -22.18969 -21.76504 -20.32891 -20.14575 -19.45552 -16.50774 -15.59754 -15.27372 -14.98726 -14.37642 -14.31146 -13.94611 -13.55638 -13.51501 -12.61681 -11.95028 -11.75551 -11.67364 -11.57088 -11.45558 -11.38632 -11.20500 -10.91117 -10.67778 -10.60452 -10.50161 -10.24290 -10.11756 -9.95888 -9.71476 -9.51400 -9.40171 -9.06474 -8.39869 -7.17715 -5.99635 -4.00308 3.32649 3.40199 3.45366 3.87463 4.16793 4.45162 4.66623 4.91067 5.01507 5.02908 5.23210 5.30599 5.36170 5.43605 5.51061 5.61528 5.64313 5.74441 5.84925 5.90764 5.92923 6.06439 6.12498 6.15085 6.17162 6.18470 6.28981 6.36360 6.41469 6.42973 6.56304 6.75120 6.86201 6.90786 7.37700 7.41065 7.86269 8.16667 8.28874 8.61873 9.08513 9.63820 11.11295 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.006892 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.878844 B = 4061.916232 C = 5779.829938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.191 3.809 10 N -0.535 5.535 11 C 0.058 3.942 12 C -0.109 4.109 13 C -0.086 4.086 14 C -0.145 4.145 15 C -0.182 4.182 16 C -0.187 4.187 17 C 0.091 3.909 18 C -0.130 4.130 19 C -0.192 4.192 20 C -0.185 4.185 21 H 0.260 0.740 22 H 0.035 0.965 23 H -0.013 1.013 24 H 0.059 0.941 25 H 0.019 0.981 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.019 0.981 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -13.156 -1.941 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.259 5.259 11 C -0.070 4.070 12 C -0.147 4.147 13 C -0.124 4.124 14 C -0.163 4.163 15 C -0.219 4.219 16 C -0.224 4.224 17 C -0.037 4.037 18 C -0.149 4.149 19 C -0.229 4.229 20 C -0.222 4.222 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.005 0.995 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.037 0.963 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.970 -12.946 -2.323 13.484 hybrid contribution -0.257 0.793 0.645 1.054 sum 2.713 -12.153 -1.679 12.564 Atomic orbital electron populations 1.69972 1.06051 1.26561 1.51318 1.24983 0.94829 0.99257 0.95569 0.86484 0.80158 0.83589 0.77459 1.19631 1.21059 1.21184 1.21237 0.93567 0.90008 1.49572 0.91776 1.19767 0.90152 0.87381 0.96108 1.62033 1.27847 1.02906 1.33097 1.22017 0.96263 0.93138 0.95622 1.21525 1.00846 0.95571 0.96794 1.21162 1.00123 0.98229 0.92907 1.22385 0.96440 0.99243 0.98262 1.23023 0.92983 1.02638 1.03283 1.22958 1.05359 0.92396 1.01733 1.21566 0.91542 0.99977 0.90662 1.22460 0.98103 0.98066 0.96267 1.23010 1.03118 0.92176 1.04575 1.22893 0.96763 1.02057 1.00526 0.93058 0.94738 0.99472 0.92220 0.96310 0.91501 0.91433 0.92041 0.92344 0.87774 0.88918 0.89117 0.89241 0.89124 0.96293 0.89266 0.87400 0.89463 0.89577 0.89353 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.21 8.24 -34.44 -0.28 -14.49 16 8 H 0.06 1.80 7.30 -52.49 -0.38 1.41 16 9 C 0.19 4.99 4.57 -4.97 -0.02 4.96 16 10 N -0.53 -11.54 4.38 -236.06 -1.04 -12.57 16 11 C 0.06 1.06 4.79 -3.82 -0.02 1.04 16 12 C -0.11 -1.84 5.13 -26.73 -0.14 -1.98 16 13 C -0.09 -1.17 5.50 -26.73 -0.15 -1.32 16 14 C -0.15 -1.83 5.73 -90.62 -0.52 -2.35 16 15 C -0.18 -2.12 10.18 -26.69 -0.27 -2.40 16 16 C -0.19 -2.01 10.25 -26.69 -0.27 -2.28 16 17 C 0.09 1.79 5.09 -3.82 -0.02 1.77 16 18 C -0.13 -2.12 5.15 -90.62 -0.47 -2.59 16 19 C -0.19 -2.61 10.15 -26.73 -0.27 -2.88 16 20 C -0.18 -2.56 10.25 -26.74 -0.27 -2.84 16 21 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.03 0.96 6.49 -51.93 -0.34 0.62 16 23 H -0.01 -0.35 8.12 -51.93 -0.42 -0.78 16 24 H 0.06 0.99 7.32 -51.93 -0.38 0.61 16 25 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 26 H 0.07 1.28 6.80 -51.93 -0.35 0.92 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 30 H 0.10 1.34 8.08 -51.93 -0.42 0.92 16 31 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 36 H 0.09 1.96 6.58 -51.93 -0.34 1.61 16 37 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 38 H 0.09 1.17 8.03 -51.93 -0.42 0.75 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -29.01 331.02 -10.77 -39.79 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.64 Total: 1.08 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -2.80 Total: -23.88 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.30 Total: -38.70 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.01 -10.77 -39.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.807 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds