Wall clock time and date at job start Sun Mar 29 2020 21:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99882 * 2 1 4 4 H 1.48498 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47475 * 300.00300 * 3 2 1 6 6 H 1.48506 * 109.47455 * 60.00062 * 3 2 1 7 7 C 1.37869 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46880 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99620 * 190.00363 * 10 9 7 12 12 C 1.53002 * 109.47178 * 71.94056 * 11 10 9 13 13 C 1.53000 * 109.46722 * 174.78782 * 12 11 10 14 14 C 1.52998 * 109.46990 * 179.97438 * 13 12 11 15 15 C 1.52998 * 117.50245 * 243.75058 * 14 13 12 16 16 C 1.52999 * 117.50125 * 175.08812 * 14 13 12 17 17 C 1.46890 * 111.00314 * 66.04743 * 10 9 7 18 18 C 1.53009 * 109.47203 * 199.41660 * 17 10 9 19 19 C 1.53003 * 117.49625 * 243.51185 * 18 17 10 20 20 C 1.52994 * 117.49750 * 174.89168 * 18 17 10 21 21 H 0.97002 * 120.00276 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47062 * 60.00427 * 9 7 2 23 23 H 1.09004 * 109.47096 * 300.00347 * 9 7 2 24 24 H 1.09003 * 109.46984 * 191.93850 * 11 10 9 25 25 H 1.09000 * 109.47353 * 311.93966 * 11 10 9 26 26 H 1.08993 * 109.47390 * 294.79027 * 12 11 10 27 27 H 1.09002 * 109.47155 * 54.79568 * 12 11 10 28 28 H 1.08997 * 109.47776 * 299.99961 * 13 12 11 29 29 H 1.09000 * 109.47174 * 60.00544 * 13 12 11 30 30 H 1.09005 * 115.55148 * 29.41975 * 14 13 12 31 31 H 1.08997 * 117.49894 * 359.97438 * 15 14 13 32 32 H 1.08998 * 117.50096 * 145.02400 * 15 14 13 33 33 H 1.09005 * 117.50203 * 214.98069 * 16 14 13 34 34 H 1.09003 * 117.49754 * 0.02562 * 16 14 13 35 35 H 1.08993 * 109.47333 * 79.41378 * 17 10 9 36 36 H 1.09001 * 109.46979 * 319.40991 * 17 10 9 37 37 H 1.08992 * 115.54688 * 29.21564 * 18 17 10 38 38 H 1.09004 * 117.49961 * 359.97438 * 19 18 17 39 39 H 1.08998 * 117.49653 * 145.01387 * 19 18 17 40 40 H 1.09003 * 117.49622 * 214.97234 * 20 18 17 41 41 H 1.08996 * 117.50333 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5211 -4.8935 -0.2388 12 6 1.0732 -4.9675 -1.6999 13 6 0.4770 -6.3482 -1.9812 14 6 0.0286 -6.4221 -3.4421 15 6 -1.4653 -6.6096 -3.7140 16 6 -0.4921 -7.7665 -3.9542 17 6 2.9709 -3.6540 1.2527 18 6 4.2446 -4.4766 1.0475 19 6 4.3936 -5.7632 1.8621 20 6 5.2410 -4.5369 2.2069 21 1 -0.4851 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6245 -2.5570 0.8897 24 1 2.2034 -5.7164 -0.0258 25 1 0.6499 -4.9659 0.4123 26 1 0.3211 -4.2016 -1.8887 27 1 1.9312 -4.8027 -2.3517 28 1 1.2292 -7.1142 -1.7925 29 1 -0.3810 -6.5131 -1.3295 30 1 0.5931 -5.8025 -4.1391 31 1 -2.1286 -6.6808 -2.8521 32 1 -1.8835 -6.1139 -4.5900 33 1 -0.2705 -8.0313 -4.9881 34 1 -0.5156 -8.5983 -3.2501 35 1 2.3649 -4.1116 2.0346 36 1 3.2374 -2.6389 1.5468 37 1 4.6495 -4.4715 0.0356 38 1 3.5844 -6.0234 2.5445 39 1 4.8965 -6.6049 1.3860 40 1 6.3016 -4.5719 1.9578 41 1 4.9894 -3.9903 3.1158 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:35 Heat of formation + Delta-G solvation = 17.081763 kcal Electronic energy + Delta-G solvation = -16848.012399 eV Core-core repulsion = 14342.102346 eV Total energy + Delta-G solvation = -2505.910053 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.49073 -38.47841 -37.04539 -34.82424 -33.29175 -29.43218 -28.20170 -25.81826 -23.70800 -23.18709 -23.08406 -21.66826 -21.37951 -20.92208 -18.61111 -16.94679 -16.77632 -16.40555 -15.92257 -15.69332 -15.28983 -15.06206 -14.88858 -14.33161 -13.65491 -13.48950 -13.20314 -12.90088 -12.82557 -12.71086 -12.42186 -12.34772 -12.29523 -12.13997 -12.00446 -11.79767 -11.56181 -11.28775 -11.09317 -10.94521 -10.73422 -10.63083 -10.55660 -8.99323 -8.20224 -6.29733 1.39823 1.40599 1.54436 2.40271 2.93559 2.97974 3.11800 3.26428 3.77676 4.01837 4.04002 4.08829 4.13760 4.16513 4.27340 4.34280 4.46058 4.50690 4.73869 4.79666 4.80865 4.82150 4.86839 4.87220 4.98109 4.99754 5.07582 5.11059 5.20068 5.28345 5.31102 5.31678 5.34249 5.41135 5.45220 5.52353 5.67452 6.08801 6.40464 6.69586 6.87667 7.39882 8.91260 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.006892 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.878844 B = 4061.916232 C = 5779.829938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.061 3.939 12 C -0.101 4.101 13 C -0.075 4.075 14 C -0.166 4.166 15 C -0.191 4.191 16 C -0.166 4.166 17 C 0.095 3.905 18 C -0.153 4.153 19 C -0.170 4.170 20 C -0.174 4.174 21 H 0.264 0.736 22 H 0.010 0.990 23 H -0.046 1.046 24 H 0.086 0.914 25 H 0.009 0.991 26 H 0.033 0.967 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 -14.545 -2.005 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.264 5.264 11 C -0.067 4.067 12 C -0.139 4.139 13 C -0.113 4.113 14 C -0.184 4.184 15 C -0.228 4.228 16 C -0.202 4.202 17 C -0.033 4.033 18 C -0.172 4.172 19 C -0.207 4.207 20 C -0.211 4.211 21 H 0.073 0.927 22 H 0.028 0.972 23 H -0.029 1.029 24 H 0.104 0.896 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.556 -14.357 -2.384 15.250 hybrid contribution -0.766 1.188 0.683 1.570 sum 3.790 -13.169 -1.701 13.809 Atomic orbital electron populations 1.70100 1.07747 1.27756 1.52049 1.25906 0.95714 1.03165 0.94895 0.85355 0.79018 0.78656 0.77735 1.18707 1.20376 1.20384 1.21505 0.93559 0.91152 1.49627 0.92010 1.19390 0.90159 0.89013 0.93262 1.62015 1.26903 1.03121 1.34319 1.22106 0.96204 0.92142 0.96284 1.21429 0.99788 0.96965 0.95728 1.21047 1.00342 0.96139 0.93768 1.22341 0.97198 1.01357 0.97506 1.23109 0.92516 1.03671 1.03527 1.23043 1.02919 0.91566 1.02716 1.21502 0.92989 0.99164 0.89694 1.22187 0.97367 1.00516 0.97108 1.23090 1.02811 0.91827 1.02965 1.23004 0.97395 1.01799 0.98942 0.92748 0.97221 1.02865 0.89564 0.97314 0.94787 0.91902 0.90272 0.92339 0.88476 0.89047 0.88699 0.87783 0.87962 0.96384 0.92289 0.87998 0.89192 0.87248 0.87340 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 13.29 21.44 0.28 -57.26 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.52 -30.25 8.24 25.60 0.21 -30.04 16 8 H 0.06 3.55 7.30 -2.91 -0.02 3.53 16 9 C 0.21 11.47 4.57 85.56 0.39 11.86 16 10 N -0.54 -24.06 4.38 -900.77 -3.95 -28.01 16 11 C 0.06 2.24 4.79 86.30 0.41 2.65 16 12 C -0.10 -3.49 5.13 30.60 0.16 -3.33 16 13 C -0.08 -1.98 5.50 30.59 0.17 -1.81 16 14 C -0.17 -4.04 5.73 -10.79 -0.06 -4.10 16 15 C -0.19 -4.28 10.18 30.62 0.31 -3.97 16 16 C -0.17 -3.16 10.25 30.62 0.31 -2.85 16 17 C 0.09 3.80 5.09 86.31 0.44 4.24 16 18 C -0.15 -4.80 5.15 -10.79 -0.06 -4.85 16 19 C -0.17 -4.11 10.15 30.59 0.31 -3.80 16 20 C -0.17 -4.40 10.25 30.59 0.31 -4.08 16 21 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 22 H 0.01 0.58 6.49 -2.39 -0.02 0.56 16 23 H -0.05 -2.80 8.12 -2.38 -0.02 -2.82 16 24 H 0.09 2.73 7.32 -2.39 -0.02 2.71 16 25 H 0.01 0.34 8.05 -2.39 -0.02 0.32 16 26 H 0.03 1.37 6.80 -2.39 -0.02 1.36 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.54 7.87 -2.39 -0.02 1.52 16 30 H 0.10 2.49 8.08 -2.38 -0.02 2.47 16 31 H 0.09 2.05 8.03 -2.39 -0.02 2.03 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.02 0.71 7.74 -2.39 -0.02 0.69 16 36 H 0.06 2.68 6.58 -2.39 -0.02 2.67 16 37 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.09 2.15 8.03 -2.39 -0.02 2.13 16 39 H 0.11 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -64.26 331.02 2.69 -61.57 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.96 Total: 16.09 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 3.37 Total: -39.57 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -3.66 Total: -85.27 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.26 2.69 -61.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.651 kcal (2) G-P(sol) polarization free energy of solvation -64.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds