Wall clock time and date at job start Sun Mar 29 2020 21:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47275 * 2 1 4 4 N 1.46900 * 109.47021 * 120.00127 * 2 1 3 5 5 C 1.46899 * 110.99990 * 279.57074 * 4 2 1 6 6 H 1.09001 * 109.47160 * 350.95309 * 5 4 2 7 7 C 1.52994 * 109.47153 * 110.94987 * 5 4 2 8 8 C 1.52998 * 109.47442 * 230.95288 * 5 4 2 9 9 C 1.50698 * 109.46962 * 64.99781 * 8 5 4 10 10 H 1.07994 * 120.00246 * 0.02562 * 9 8 5 11 11 C 1.37884 * 119.99764 * 180.02562 * 9 8 5 12 12 N 1.31512 * 119.99743 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99989 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47490 * 59.99642 * 13 11 9 15 15 H 1.48500 * 109.47459 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47354 * 300.00041 * 13 11 9 17 17 C 1.50701 * 109.46509 * 239.99541 * 2 1 3 18 18 C 1.35322 * 126.12822 * 234.99721 * 17 2 1 19 19 C 1.39863 * 107.92198 * 180.02562 * 18 17 2 20 20 N 1.30840 * 108.20108 * 0.02562 * 19 18 17 21 21 N 1.34949 * 126.12712 * 55.00674 * 17 2 1 22 22 C 1.46500 * 126.03785 * 0.25484 * 21 17 2 23 23 H 1.08996 * 109.47380 * 57.67101 * 1 2 3 24 24 H 1.08997 * 109.47439 * 177.67792 * 1 2 3 25 25 H 1.09002 * 109.46715 * 297.67427 * 1 2 3 26 26 H 1.00905 * 110.99862 * 155.61973 * 4 2 1 27 27 H 1.09004 * 109.47223 * 304.95715 * 7 5 4 28 28 H 1.09001 * 109.47616 * 64.95447 * 7 5 4 29 29 H 1.09001 * 109.47572 * 184.95734 * 7 5 4 30 30 H 1.08996 * 109.47348 * 185.00066 * 8 5 4 31 31 H 1.08999 * 109.46843 * 305.00073 * 8 5 4 32 32 H 0.97005 * 119.99305 * 179.97438 * 12 11 9 33 33 H 1.08004 * 126.03616 * 0.02877 * 18 17 2 34 34 H 1.08002 * 125.90066 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.47357 * 269.71868 * 22 21 17 36 36 H 1.09001 * 109.46546 * 29.71829 * 22 21 17 37 37 H 1.08998 * 109.46982 * 149.71280 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.9802 0.1924 2.3713 6 1 1.7478 1.2083 2.0517 7 6 0.9035 -0.2954 3.3427 8 6 3.3417 0.1761 3.0689 9 6 4.3816 0.7712 2.1548 10 1 4.0995 1.1259 1.1746 11 6 5.6933 0.8627 2.5700 12 7 6.0366 0.4312 3.7639 13 14 6.9821 1.6009 1.4373 14 1 6.6107 3.0011 1.1107 15 1 8.3040 1.5839 2.1138 16 1 7.0566 0.8040 0.1863 17 6 2.0322 -0.7105 -1.2305 18 6 2.8892 -1.7576 -1.2533 19 6 3.0961 -2.1154 -2.5894 20 7 2.3891 -1.3117 -3.3419 21 7 1.7080 -0.4166 -2.5070 22 6 0.8085 0.6544 -2.9430 23 1 -0.3634 0.5495 -0.8683 24 1 -0.3634 -1.0268 -0.0416 25 1 -0.3633 0.4773 0.9101 26 1 2.9492 -1.0567 1.0525 27 1 -0.0508 -0.3676 2.8210 28 1 1.1808 -1.2758 3.7301 29 1 0.8133 0.4096 4.1691 30 1 3.2868 0.7616 3.9866 31 1 3.6145 -0.8514 3.3093 32 1 6.9595 0.4953 4.0559 33 1 3.3347 -2.2329 -0.3918 34 1 3.7305 -2.9162 -2.9396 35 1 -0.2103 0.2715 -3.0028 36 1 0.8468 1.4751 -2.2267 37 1 1.1198 1.0135 -3.9239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879686805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:45 Heat of formation + Delta-G solvation = 67.327689 kcal Electronic energy + Delta-G solvation = -17308.841286 eV Core-core repulsion = 14701.569716 eV Total energy + Delta-G solvation = -2607.271570 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02732 -37.13260 -33.78944 -32.91344 -31.84938 -28.94028 -28.06570 -27.28582 -26.60373 -23.16253 -22.45214 -20.87084 -19.49614 -19.24179 -16.63990 -16.29849 -15.56318 -15.04195 -14.60231 -14.27847 -14.14941 -13.51866 -13.30160 -12.69550 -12.63224 -12.44899 -12.14132 -11.93533 -11.68409 -11.60086 -11.34909 -11.06592 -10.87596 -10.66876 -10.59457 -10.29780 -10.20552 -9.31162 -9.16556 -9.00029 -8.43358 -8.20115 -7.72458 -6.06179 -4.09926 2.13245 2.71374 3.16502 3.29413 3.34361 3.37367 4.40969 4.62693 4.75211 4.86481 5.15310 5.29311 5.31485 5.36305 5.43591 5.59160 5.76248 5.93239 5.93867 5.99638 6.15666 6.24464 6.29884 6.40318 6.51545 6.57905 6.85338 6.94447 6.95207 7.22254 7.44564 7.58563 7.90498 7.93457 8.00979 8.19487 8.31610 8.96311 9.55347 11.04411 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.008518 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.361129 B = 3286.427356 C = 4184.761839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.150 3.850 3 H 0.057 0.943 4 N -0.670 5.670 5 C 0.085 3.915 6 H 0.043 0.957 7 C -0.133 4.133 8 C 0.010 3.990 9 C -0.526 4.526 10 H 0.050 0.950 11 C 0.063 3.937 12 N -0.890 5.890 13 Si 0.887 3.113 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.096 3.904 18 C -0.260 4.260 19 C 0.046 3.954 20 N -0.310 5.310 21 N -0.376 5.376 22 C 0.102 3.898 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.359 0.641 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.153 0.847 34 H 0.180 0.820 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 -0.939 -8.865 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.037 3.963 3 H 0.075 0.925 4 N -0.306 5.306 5 C -0.024 4.024 6 H 0.062 0.938 7 C -0.192 4.192 8 C -0.027 4.027 9 C -0.564 4.564 10 H 0.068 0.932 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.031 4.031 18 C -0.289 4.289 19 C -0.140 4.140 20 N -0.131 5.131 21 N -0.159 5.159 22 C -0.040 4.040 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.182 0.818 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.170 0.830 34 H 0.197 0.803 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.019 -0.833 -9.845 14.800 hybrid contribution 1.875 0.835 0.045 2.053 sum -9.144 0.002 -9.800 13.403 Atomic orbital electron populations 1.21941 0.94198 1.02407 1.01404 1.20039 0.95137 0.95048 0.86046 0.92542 1.60792 1.32363 1.36063 1.01340 1.21711 0.97482 0.93024 0.90175 0.93843 1.21830 0.98040 1.00962 0.98329 1.19504 0.89347 0.97881 0.95998 1.21114 0.93117 1.40954 1.01213 0.93184 1.24962 0.98564 0.95352 0.94995 1.69946 1.18215 1.46529 1.18161 0.86736 0.80939 0.79756 0.81089 1.20424 1.21209 1.20085 1.21186 0.97788 0.97636 0.86517 1.21269 1.07180 1.02562 0.97855 1.23788 0.98821 0.99031 0.92348 1.77260 1.12988 1.04970 1.17917 1.48299 1.37215 1.26817 1.03584 1.21847 0.92267 0.87813 1.02065 0.93208 0.91929 0.91584 0.81829 0.93906 0.92904 0.93567 0.95931 0.95732 0.92847 0.82982 0.80261 0.90986 0.89604 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.13 37.16 0.34 -1.54 16 2 C 0.15 2.43 2.52 -68.86 -0.17 2.26 16 3 H 0.06 0.99 7.55 -51.93 -0.39 0.60 16 4 N -0.67 -12.32 5.96 -100.96 -0.60 -12.92 16 5 C 0.09 1.68 2.30 -67.72 -0.16 1.53 16 6 H 0.04 0.87 7.24 -51.93 -0.38 0.49 16 7 C -0.13 -2.28 9.49 37.15 0.35 -1.93 16 8 C 0.01 0.25 4.35 -27.88 -0.12 0.13 16 9 C -0.53 -14.12 8.32 -34.44 -0.29 -14.41 16 10 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 13 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.10 1.60 6.24 -82.26 -0.51 1.09 16 18 C -0.26 -4.41 9.81 -40.01 -0.39 -4.80 16 19 C 0.05 0.71 12.03 -17.37 -0.21 0.50 16 20 N -0.31 -5.16 12.58 30.62 0.39 -4.77 16 21 N -0.38 -5.81 4.01 -63.88 -0.26 -6.07 16 22 C 0.10 1.11 9.75 59.85 0.58 1.69 16 23 H 0.05 0.54 5.56 -51.93 -0.29 0.25 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.87 6.77 -51.93 -0.35 0.51 16 26 H 0.36 7.31 5.48 -39.29 -0.22 7.09 16 27 H 0.04 0.65 7.04 -51.93 -0.37 0.28 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.15 2.56 6.88 -52.48 -0.36 2.20 16 34 H 0.18 2.18 8.06 -52.49 -0.42 1.75 16 35 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 36 H 0.09 0.83 7.16 -51.93 -0.37 0.46 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 300.59 15.07 4.53 4.53 Total: -1.00 -30.54 300.59 -6.53 -37.07 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.63 Total: 4.84 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.67 Total: -13.81 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.26 Total: -49.09 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.54 -6.53 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879686805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.397 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds