Wall clock time and date at job start Sun Mar 29 2020 21:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47275 * 2 1 4 4 N 1.46900 * 109.47021 * 120.00127 * 2 1 3 5 5 C 1.46899 * 110.99990 * 279.57074 * 4 2 1 6 6 H 1.09001 * 109.47160 * 350.95309 * 5 4 2 7 7 C 1.52994 * 109.47153 * 110.94987 * 5 4 2 8 8 C 1.52998 * 109.47442 * 230.95288 * 5 4 2 9 9 C 1.50698 * 109.46962 * 64.99781 * 8 5 4 10 10 H 1.07994 * 120.00246 * 0.02562 * 9 8 5 11 11 C 1.37884 * 119.99764 * 180.02562 * 9 8 5 12 12 N 1.31512 * 119.99743 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99989 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47490 * 59.99642 * 13 11 9 15 15 H 1.48500 * 109.47459 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47354 * 300.00041 * 13 11 9 17 17 C 1.50701 * 109.46509 * 239.99541 * 2 1 3 18 18 C 1.35322 * 126.12822 * 234.99721 * 17 2 1 19 19 C 1.39863 * 107.92198 * 180.02562 * 18 17 2 20 20 N 1.30840 * 108.20108 * 0.02562 * 19 18 17 21 21 N 1.34949 * 126.12712 * 55.00674 * 17 2 1 22 22 C 1.46500 * 126.03785 * 0.25484 * 21 17 2 23 23 H 1.08996 * 109.47380 * 57.67101 * 1 2 3 24 24 H 1.08997 * 109.47439 * 177.67792 * 1 2 3 25 25 H 1.09002 * 109.46715 * 297.67427 * 1 2 3 26 26 H 1.00905 * 110.99862 * 155.61973 * 4 2 1 27 27 H 1.09004 * 109.47223 * 304.95715 * 7 5 4 28 28 H 1.09001 * 109.47616 * 64.95447 * 7 5 4 29 29 H 1.09001 * 109.47572 * 184.95734 * 7 5 4 30 30 H 1.08996 * 109.47348 * 185.00066 * 8 5 4 31 31 H 1.08999 * 109.46843 * 305.00073 * 8 5 4 32 32 H 0.97005 * 119.99305 * 179.97438 * 12 11 9 33 33 H 1.08004 * 126.03616 * 0.02877 * 18 17 2 34 34 H 1.08002 * 125.90066 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.47357 * 269.71868 * 22 21 17 36 36 H 1.09001 * 109.46546 * 29.71829 * 22 21 17 37 37 H 1.08998 * 109.46982 * 149.71280 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.9802 0.1924 2.3713 6 1 1.7478 1.2083 2.0517 7 6 0.9035 -0.2954 3.3427 8 6 3.3417 0.1761 3.0689 9 6 4.3816 0.7712 2.1548 10 1 4.0995 1.1259 1.1746 11 6 5.6933 0.8627 2.5700 12 7 6.0366 0.4312 3.7639 13 14 6.9821 1.6009 1.4373 14 1 6.6107 3.0011 1.1107 15 1 8.3040 1.5839 2.1138 16 1 7.0566 0.8040 0.1863 17 6 2.0322 -0.7105 -1.2305 18 6 2.8892 -1.7576 -1.2533 19 6 3.0961 -2.1154 -2.5894 20 7 2.3891 -1.3117 -3.3419 21 7 1.7080 -0.4166 -2.5070 22 6 0.8085 0.6544 -2.9430 23 1 -0.3634 0.5495 -0.8683 24 1 -0.3634 -1.0268 -0.0416 25 1 -0.3633 0.4773 0.9101 26 1 2.9492 -1.0567 1.0525 27 1 -0.0508 -0.3676 2.8210 28 1 1.1808 -1.2758 3.7301 29 1 0.8133 0.4096 4.1691 30 1 3.2868 0.7616 3.9866 31 1 3.6145 -0.8514 3.3093 32 1 6.9595 0.4953 4.0559 33 1 3.3347 -2.2329 -0.3918 34 1 3.7305 -2.9162 -2.9396 35 1 -0.2103 0.2715 -3.0028 36 1 0.8468 1.4751 -2.2267 37 1 1.1198 1.0135 -3.9239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879686805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:44 Heat of formation + Delta-G solvation = 47.360877 kcal Electronic energy + Delta-G solvation = -17309.707112 eV Core-core repulsion = 14701.569716 eV Total energy + Delta-G solvation = -2608.137396 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.23328 -38.63655 -35.38717 -34.35873 -33.43814 -30.22356 -29.39283 -29.15712 -27.62077 -25.04096 -23.78438 -22.13138 -21.03879 -20.46049 -18.51763 -17.84130 -16.85190 -16.54741 -16.20472 -15.66571 -15.47890 -14.78379 -14.54984 -14.31187 -13.85004 -13.62795 -13.46081 -13.40903 -13.26509 -13.03831 -12.91337 -12.63914 -12.45559 -12.25869 -12.12146 -12.08322 -11.54698 -11.16960 -11.07316 -10.58857 -10.19999 -9.45397 -9.21732 -8.20768 -6.30442 0.90811 1.36313 1.38065 1.45268 1.63808 1.91589 2.37599 3.11328 3.34641 3.56788 3.74269 4.11799 4.30239 4.34394 4.40485 4.42793 4.57152 4.70116 4.71253 4.75328 4.79000 4.89231 4.99692 5.07707 5.21604 5.24493 5.34673 5.44242 5.52408 5.54140 5.75773 5.83794 6.08191 6.20684 6.38613 6.54856 6.76362 6.84921 7.38522 8.90278 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.008518 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.361129 B = 3286.427356 C = 4184.761839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.151 3.849 3 H 0.046 0.954 4 N -0.667 5.667 5 C 0.096 3.904 6 H 0.044 0.956 7 C -0.126 4.126 8 C 0.016 3.984 9 C -0.530 4.530 10 H 0.052 0.948 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.950 3.050 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.087 3.913 18 C -0.285 4.285 19 C 0.043 3.957 20 N -0.328 5.328 21 N -0.375 5.375 22 C 0.089 3.911 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.346 0.654 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.052 0.948 30 H -0.003 1.003 31 H -0.001 1.001 32 H 0.263 0.737 33 H 0.144 0.856 34 H 0.208 0.792 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.309 -0.233 -10.401 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.064 0.936 4 N -0.301 5.301 5 C -0.014 4.014 6 H 0.062 0.938 7 C -0.184 4.184 8 C -0.021 4.021 9 C -0.568 4.568 10 H 0.070 0.930 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.776 3.224 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.042 4.042 18 C -0.314 4.314 19 C -0.142 4.142 20 N -0.150 5.150 21 N -0.158 5.158 22 C -0.051 4.051 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.224 0.776 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.202 -0.111 -11.401 16.700 hybrid contribution 2.208 0.619 0.511 2.349 sum -9.994 0.508 -10.890 14.790 Atomic orbital electron populations 1.21898 0.91531 1.02719 1.02995 1.20111 0.97066 0.93943 0.85003 0.93603 1.60899 1.31377 1.35797 1.02000 1.21539 0.95361 0.93636 0.90849 0.93756 1.21752 0.98096 1.00528 0.98028 1.19396 0.92046 0.95496 0.95187 1.21430 0.93768 1.40237 1.01390 0.93001 1.25769 1.00810 0.95941 0.96338 1.70066 1.18681 1.48003 1.19894 0.85729 0.78428 0.79132 0.79137 1.19643 1.20860 1.19721 1.21248 0.97940 0.97736 0.87231 1.21411 1.08102 1.03508 0.98393 1.24226 0.98805 0.99463 0.91667 1.77213 1.13592 1.05603 1.18579 1.48624 1.37145 1.27106 1.02921 1.22243 0.92641 0.87211 1.03048 0.90441 0.92298 0.91109 0.83390 0.91390 0.93655 0.92926 0.98423 0.98304 0.92817 0.83840 0.77576 0.88744 0.88293 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.13 71.98 0.66 -2.52 16 2 C 0.15 4.68 2.52 44.17 0.11 4.79 16 3 H 0.05 1.54 7.55 -2.39 -0.02 1.52 16 4 N -0.67 -24.24 5.96 -473.33 -2.82 -27.06 16 5 C 0.10 3.73 2.30 44.91 0.10 3.83 16 6 H 0.04 1.72 7.24 -2.39 -0.02 1.70 16 7 C -0.13 -4.14 9.49 71.98 0.68 -3.46 16 8 C 0.02 0.83 4.35 29.85 0.13 0.96 16 9 C -0.53 -28.77 8.32 25.60 0.21 -28.56 16 10 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 11 C 0.01 0.57 5.46 84.66 0.46 1.03 16 12 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 13 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 17 C 0.09 2.80 6.24 41.41 0.26 3.06 16 18 C -0.28 -9.57 9.81 21.99 0.22 -9.36 16 19 C 0.04 1.30 12.03 85.23 1.02 2.33 16 20 N -0.33 -10.40 12.58 -57.02 -0.72 -11.12 16 21 N -0.37 -10.85 4.01 -356.03 -1.43 -12.28 16 22 C 0.09 1.67 9.75 127.77 1.25 2.91 16 23 H 0.08 1.40 5.56 -2.39 -0.01 1.39 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.07 1.63 6.77 -2.39 -0.02 1.61 16 26 H 0.35 14.27 5.48 -89.69 -0.49 13.78 16 27 H 0.07 1.89 7.04 -2.39 -0.02 1.88 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 33 H 0.14 4.95 6.88 -2.91 -0.02 4.93 16 34 H 0.21 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.09 1.37 7.86 -2.39 -0.02 1.36 16 36 H 0.10 1.60 7.16 -2.39 -0.02 1.58 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.44 300.59 3.01 -62.44 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.56 Total: 21.75 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 5.11 Total: -24.98 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.68 Total: -105.41 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -65.44 3.01 -62.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879686805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.797 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds