Wall clock time and date at job start Sun Mar 29 2020 21:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47058 * 2 1 4 4 C 1.53006 * 109.47143 * 240.00259 * 2 1 3 5 5 C 1.50703 * 109.47265 * 174.99747 * 4 2 1 6 6 H 1.08008 * 119.99660 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00090 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99767 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99735 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47557 * 60.00263 * 9 7 5 11 11 H 1.48508 * 109.46747 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47352 * 299.99780 * 9 7 5 13 13 N 1.46898 * 109.47777 * 120.00215 * 2 1 3 14 14 C 1.46900 * 111.00012 * 251.56130 * 13 2 1 15 15 H 1.08997 * 109.47058 * 319.93195 * 14 13 2 16 16 C 1.53000 * 109.47327 * 79.93590 * 14 13 2 17 17 C 1.50700 * 109.47046 * 199.93331 * 14 13 2 18 18 C 1.35319 * 126.12467 * 5.02274 * 17 14 13 19 19 C 1.39872 * 107.92014 * 179.97438 * 18 17 14 20 20 N 1.30836 * 108.20190 * 359.97438 * 19 18 17 21 21 N 1.34946 * 126.12832 * 184.71306 * 17 14 13 22 22 C 1.46493 * 126.03611 * 0.03587 * 21 17 14 23 23 H 1.08998 * 109.47433 * 66.57291 * 1 2 3 24 24 H 1.09004 * 109.46951 * 186.57131 * 1 2 3 25 25 H 1.08992 * 109.46884 * 306.57129 * 1 2 3 26 26 H 1.08996 * 109.47070 * 295.00022 * 4 2 1 27 27 H 1.08995 * 109.47083 * 54.99966 * 4 2 1 28 28 H 0.97007 * 119.99719 * 179.97438 * 8 7 5 29 29 H 1.00893 * 111.00500 * 127.60099 * 13 2 1 30 30 H 1.09004 * 109.47124 * 301.93096 * 16 14 13 31 31 H 1.08998 * 109.47132 * 61.93092 * 16 14 13 32 32 H 1.08999 * 109.47236 * 181.93122 * 16 14 13 33 33 H 1.07994 * 126.04263 * 359.94506 * 18 17 14 34 34 H 1.08003 * 125.90307 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.47641 * 90.00224 * 22 21 17 36 36 H 1.09010 * 109.47196 * 210.00068 * 22 21 17 37 37 H 1.09004 * 109.47260 * 329.99681 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0853 -0.5397 7 6 4.2304 -1.1934 -2.3579 8 7 3.5765 -1.8385 -3.2990 9 14 6.0921 -1.0621 -2.4362 10 1 6.6839 -1.6881 -1.2266 11 1 6.5872 -1.7631 -3.6482 12 1 6.4854 0.3686 -2.4959 13 7 2.0198 -0.6925 1.1993 14 6 2.6043 0.2583 2.1545 15 1 3.1797 1.0095 1.6134 16 6 1.4854 0.9428 2.9422 17 6 3.5104 -0.4789 3.1065 18 6 3.8359 -1.7909 3.0435 19 6 4.6970 -2.0723 4.1093 20 7 4.8823 -0.9689 4.7873 21 7 4.1473 0.0522 4.1711 22 6 4.0796 1.4491 4.6070 23 1 -0.3634 0.4086 -0.9429 24 1 -0.3633 -1.0210 0.1176 25 1 -0.3633 0.6123 0.8253 26 1 1.7516 -1.7714 -1.2057 27 1 1.6054 -0.2617 -2.1370 28 1 4.0609 -2.2453 -4.0345 29 1 2.6822 -1.4134 0.9555 30 1 0.8105 1.4475 2.2509 31 1 0.9314 0.1955 3.5103 32 1 1.9172 1.6730 3.6267 33 1 3.4913 -2.4962 2.3018 34 1 5.1335 -3.0344 4.3337 35 1 3.2557 1.5709 5.3102 36 1 5.0158 1.7238 5.0933 37 1 3.9172 2.0923 3.7421 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879686806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:46 Heat of formation + Delta-G solvation = 67.493514 kcal Electronic energy + Delta-G solvation = -17293.867184 eV Core-core repulsion = 14686.602805 eV Total energy + Delta-G solvation = -2607.264379 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03310 -37.13574 -33.79320 -32.91932 -31.84486 -28.94626 -28.09122 -27.27749 -26.60834 -23.15688 -22.46057 -20.87502 -19.48458 -19.24582 -16.63661 -16.30951 -15.56142 -15.04883 -14.60657 -14.29388 -14.16884 -13.53232 -13.30549 -12.70585 -12.62694 -12.45186 -12.12049 -11.95354 -11.70347 -11.58800 -11.33581 -11.07159 -10.87705 -10.67086 -10.59231 -10.29045 -10.21049 -9.29728 -9.16848 -9.00650 -8.43187 -8.20714 -7.73402 -6.06062 -4.09856 2.12514 2.70710 3.15853 3.29590 3.34499 3.37494 4.41066 4.62091 4.74531 4.86214 5.14643 5.28918 5.31456 5.35755 5.43044 5.58331 5.76009 5.90174 5.93668 5.99808 6.15824 6.23627 6.30452 6.38823 6.52162 6.57551 6.85888 6.94598 6.94783 7.21711 7.44962 7.58677 7.90509 7.93218 8.01016 8.19499 8.31704 8.96371 9.55419 11.04522 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.008388 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.407418 B = 3337.488089 C = 4235.123952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.042 0.958 4 C 0.011 3.989 5 C -0.526 4.526 6 H 0.050 0.950 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.670 5.670 14 C 0.149 3.851 15 H 0.056 0.944 16 C -0.142 4.142 17 C 0.096 3.904 18 C -0.260 4.260 19 C 0.046 3.954 20 N -0.310 5.310 21 N -0.376 5.376 22 C 0.102 3.898 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.025 0.975 27 H 0.022 0.978 28 H 0.262 0.738 29 H 0.360 0.640 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.153 0.847 34 H 0.181 0.819 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 4.793 12.582 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.024 4.024 3 H 0.060 0.940 4 C -0.026 4.026 5 C -0.564 4.564 6 H 0.068 0.932 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.715 3.285 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.306 5.306 14 C 0.037 3.963 15 H 0.074 0.926 16 C -0.200 4.200 17 C -0.032 4.032 18 C -0.289 4.289 19 C -0.140 4.140 20 N -0.131 5.131 21 N -0.159 5.159 22 C -0.040 4.040 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.182 0.818 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.170 0.830 34 H 0.197 0.803 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.974 5.357 13.762 14.899 hybrid contribution 1.581 -0.124 -1.309 2.056 sum -0.393 5.232 12.453 13.513 Atomic orbital electron populations 1.21845 0.96514 1.01281 0.99561 1.21707 0.93545 0.96540 0.90567 0.93988 1.19484 0.95519 0.96150 0.91482 1.21117 0.92077 1.34792 1.08442 0.93179 1.24960 0.98152 0.95097 0.95660 1.69945 1.35615 1.35376 1.11911 0.86733 0.86021 0.78185 0.77564 1.20076 1.21212 1.20424 1.60779 1.42285 1.13305 1.14214 1.20038 0.91721 0.93283 0.91248 0.92639 1.21948 0.98466 0.99781 0.99782 1.21181 0.96559 0.94522 0.90890 1.21276 1.07475 0.95710 1.04398 1.23793 0.98364 0.97358 0.94471 1.77262 1.18072 0.96001 1.21790 1.48300 1.37167 1.08552 1.21903 1.21846 1.03478 0.77375 1.01292 0.93380 0.92719 0.94238 0.95699 0.95924 0.92843 0.81755 0.91553 0.91900 0.93221 0.82959 0.80253 0.91000 0.89707 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.48 37.16 0.35 -1.94 16 2 C 0.09 1.69 2.30 -67.71 -0.16 1.53 16 3 H 0.04 0.84 7.25 -51.93 -0.38 0.46 16 4 C 0.01 0.27 4.37 -27.88 -0.12 0.15 16 5 C -0.53 -14.13 8.27 -34.44 -0.28 -14.42 16 6 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.67 -12.33 5.97 -100.95 -0.60 -12.94 16 14 C 0.15 2.42 2.53 -68.86 -0.17 2.24 16 15 H 0.06 0.96 7.54 -51.93 -0.39 0.57 16 16 C -0.14 -1.88 9.16 37.16 0.34 -1.54 16 17 C 0.10 1.59 6.24 -82.26 -0.51 1.08 16 18 C -0.26 -4.39 9.81 -40.01 -0.39 -4.79 16 19 C 0.05 0.71 12.03 -17.36 -0.21 0.50 16 20 N -0.31 -5.14 12.58 30.63 0.39 -4.75 16 21 N -0.38 -5.78 4.01 -63.88 -0.26 -6.04 16 22 C 0.10 1.10 9.75 59.84 0.58 1.69 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.59 6.76 -51.93 -0.35 0.24 16 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.36 7.33 5.46 -39.30 -0.21 7.11 16 30 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.54 5.55 -51.93 -0.29 0.25 16 33 H 0.15 2.56 6.90 -52.49 -0.36 2.20 16 34 H 0.18 2.17 8.06 -52.48 -0.42 1.75 16 35 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 36 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 37 H 0.09 0.82 7.18 -51.93 -0.37 0.45 16 LS Contribution 300.00 15.07 4.52 4.52 Total: -1.00 -30.51 300.00 -6.51 -37.02 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.60 Total: 4.88 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.67 Total: -13.81 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.26 Total: -49.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.51 -6.51 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879686806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.512 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds