Wall clock time and date at job start Sun Mar 29 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46803 * 2 1 4 4 H 1.09005 * 109.47018 * 54.84531 * 3 2 1 5 5 C 1.50706 * 109.47112 * 174.84125 * 3 2 1 6 6 H 1.07998 * 119.99156 * 119.99681 * 5 3 2 7 7 C 1.37874 * 120.00284 * 299.73073 * 5 3 2 8 8 N 1.31515 * 119.99774 * 0.26998 * 7 5 3 9 9 Si 1.86795 * 120.00088 * 180.27580 * 7 5 3 10 10 H 1.48501 * 109.46899 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47421 * 119.99601 * 9 7 5 12 12 H 1.48504 * 109.46831 * 239.99829 * 9 7 5 13 13 N 1.46894 * 109.47245 * 294.84601 * 3 2 1 14 14 C 1.46901 * 111.00319 * 153.10896 * 13 3 2 15 15 H 1.09004 * 110.79742 * 329.97879 * 14 13 3 16 16 C 1.55051 * 110.90806 * 206.36363 * 14 13 3 17 17 C 1.54313 * 103.94274 * 201.73396 * 16 14 13 18 18 H 1.08998 * 111.54056 * 146.72080 * 17 16 14 19 19 C 1.54326 * 108.78106 * 270.16762 * 17 16 14 20 20 C 1.56303 * 103.35160 * 138.46651 * 19 17 16 21 21 C 1.55059 * 102.53642 * 320.69917 * 20 19 17 22 22 C 1.54318 * 103.94109 * 39.71711 * 21 20 19 23 23 H 1.08998 * 111.53497 * 96.88421 * 22 21 20 24 24 C 1.54353 * 108.74958 * 221.08356 * 22 21 20 25 25 H 1.09007 * 109.47258 * 295.31665 * 1 2 3 26 26 H 1.08999 * 109.47428 * 55.32462 * 1 2 3 27 27 H 1.09007 * 109.46723 * 175.32870 * 1 2 3 28 28 H 1.08996 * 109.47662 * 240.00455 * 2 1 3 29 29 H 1.09004 * 109.47622 * 119.99800 * 2 1 3 30 30 H 0.97004 * 119.99549 * 180.02562 * 8 7 5 31 31 H 1.00903 * 111.00229 * 277.06312 * 13 3 2 32 32 H 1.09000 * 110.53015 * 320.34576 * 16 14 13 33 33 H 1.09001 * 110.53618 * 82.97104 * 16 14 13 34 34 H 1.09000 * 110.53007 * 257.51947 * 19 17 16 35 35 H 1.08996 * 110.53366 * 20.29415 * 19 17 16 36 36 H 1.08999 * 111.00109 * 202.21390 * 20 19 17 37 37 H 1.09004 * 110.39947 * 78.90323 * 20 19 17 38 38 H 1.08998 * 110.53405 * 281.09644 * 21 20 19 39 39 H 1.09003 * 110.53154 * 158.33482 * 21 20 19 40 40 H 1.09007 * 110.56518 * 330.48692 * 24 22 21 41 41 H 1.08994 * 110.51738 * 207.70068 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6031 1.9824 0.8403 5 6 3.5415 1.4446 0.1278 6 1 4.1487 1.8884 -0.6473 7 6 4.1399 0.8847 1.2366 8 7 3.4004 0.3442 2.1803 9 14 6.0008 0.8941 1.3985 10 1 6.5976 1.5566 0.2110 11 1 6.3871 1.6354 2.6258 12 1 6.4969 -0.5028 1.4871 13 7 1.6544 2.0982 -1.2567 14 6 1.5315 3.5509 -1.0766 15 1 1.2267 3.7901 -0.0577 16 6 0.5415 4.1543 -2.1061 17 6 0.9369 5.6444 -2.1729 18 1 0.7857 6.0542 -3.1716 19 6 0.1274 6.4213 -1.1133 20 6 1.1786 7.4061 -0.5065 21 6 2.4571 6.5316 -0.4353 22 6 2.4241 5.7174 -1.7458 23 1 3.0413 6.1768 -2.5179 24 6 2.8573 4.2677 -1.4403 25 1 -0.3634 0.4395 0.9290 26 1 -0.3634 0.5846 -0.8451 27 1 -0.3633 -1.0243 -0.0837 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8213 -0.0494 2.9606 31 1 2.3077 1.8793 -1.9940 32 1 0.6673 3.6813 -3.0800 33 1 -0.4858 4.0443 -1.7586 34 1 -0.6950 6.9623 -1.5814 35 1 -0.2469 5.7439 -0.3458 36 1 0.8769 7.7356 0.4877 37 1 1.3272 8.2588 -1.1691 38 1 2.4187 5.8678 0.4284 39 1 3.3477 7.1589 -0.3971 40 1 3.5484 4.2441 -0.5976 41 1 3.3100 3.8108 -2.3202 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893605208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:57 Heat of formation + Delta-G solvation = -33.974902 kcal Electronic energy + Delta-G solvation = -17920.235950 eV Core-core repulsion = 15412.111914 eV Total energy + Delta-G solvation = -2508.124036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.44964 -35.96810 -33.23965 -31.57446 -30.16958 -29.84669 -26.65378 -24.84894 -24.79588 -22.50641 -20.81560 -19.66171 -19.39050 -18.44307 -16.47993 -15.92755 -14.90991 -14.33151 -14.13948 -13.95233 -13.39732 -13.13129 -12.90293 -12.45658 -12.17002 -11.78375 -11.32494 -11.14435 -11.03239 -10.95937 -10.75784 -10.70524 -10.54766 -10.44946 -10.32335 -10.24440 -10.20427 -9.99658 -9.92435 -9.53787 -9.29036 -8.95267 -8.34771 -7.16039 -5.96624 -4.08877 3.26416 3.35270 3.38172 4.41153 4.71755 4.81607 4.92270 5.26664 5.37059 5.48847 5.56144 5.66008 5.78203 5.81663 5.85613 5.92749 5.98503 6.11257 6.18258 6.22873 6.31723 6.41155 6.43996 6.51059 6.51411 6.55885 6.60658 6.73964 6.75360 6.88248 6.95004 7.18812 7.21825 7.50086 7.64400 7.81901 8.14532 8.21220 8.40776 8.73295 9.05278 9.58471 11.03346 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.008012 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.363613 B = 3493.861704 C = 4272.834781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.683 5.683 14 C 0.101 3.899 15 H 0.073 0.927 16 C -0.110 4.110 17 C -0.094 4.094 18 H 0.067 0.933 19 C -0.119 4.119 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.092 4.092 23 H 0.067 0.933 24 C -0.139 4.139 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 9.861 -6.058 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.010 4.010 15 H 0.091 0.909 16 C -0.148 4.148 17 C -0.113 4.113 18 H 0.086 0.914 19 C -0.156 4.156 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.111 4.111 23 H 0.085 0.915 24 C -0.178 4.178 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.914 9.616 -5.777 12.247 hybrid contribution 2.126 0.229 0.268 2.155 sum -2.788 9.845 -5.509 11.621 Atomic orbital electron populations 1.21715 0.99113 0.98409 1.00329 1.21504 0.92049 0.99448 1.01532 1.19186 0.92865 0.91153 0.86046 0.95205 1.21936 0.92761 1.37823 1.05231 0.92650 1.24935 0.97684 0.95155 0.95861 1.69894 1.34583 1.38652 1.09316 0.86652 0.86406 0.77702 0.77908 1.19939 1.21141 1.21036 1.60826 1.53858 1.06190 1.10201 1.22401 0.92492 0.88547 0.97602 0.90919 1.22498 0.99201 0.93277 0.99827 1.22438 0.94699 0.96239 0.97947 0.91422 1.22731 0.97034 0.97700 0.98140 1.22765 0.95835 0.97606 1.00078 1.22519 0.97000 0.97976 0.98230 1.22408 0.95680 0.96525 0.96493 0.91500 1.23158 0.99506 0.94040 1.01136 0.94642 0.93118 0.95749 0.95207 0.89290 0.93043 0.85487 0.92115 0.92152 0.92325 0.91279 0.92104 0.92155 0.91002 0.92415 0.90985 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.85 37.16 0.37 -2.52 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.26 1.98 -68.86 -0.14 5.12 16 4 H 0.03 0.82 7.39 -51.93 -0.38 0.43 16 5 C -0.54 -14.21 8.10 -34.44 -0.28 -14.49 16 6 H 0.06 1.46 7.40 -52.49 -0.39 1.07 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.89 -24.97 11.30 55.43 0.63 -24.34 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -14.14 5.55 -98.68 -0.55 -14.69 16 14 C 0.10 1.85 3.13 -65.54 -0.20 1.64 16 15 H 0.07 1.47 7.40 -51.93 -0.38 1.09 16 16 C -0.11 -1.68 5.80 -24.96 -0.14 -1.83 16 17 C -0.09 -1.27 3.73 -88.23 -0.33 -1.60 16 18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.12 -1.48 6.31 -24.26 -0.15 -1.63 16 20 C -0.13 -1.50 6.94 -23.87 -0.17 -1.67 16 21 C -0.12 -1.65 6.20 -24.95 -0.15 -1.80 16 22 C -0.09 -1.32 3.78 -88.21 -0.33 -1.65 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 C -0.14 -2.41 4.94 -24.94 -0.12 -2.53 16 25 H 0.03 0.74 8.14 -51.92 -0.42 0.31 16 26 H 0.05 1.02 7.63 -51.93 -0.40 0.62 16 27 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.33 6.80 7.86 -39.29 -0.31 6.49 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.93 7.64 -51.93 -0.40 0.54 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.12 7.65 -51.93 -0.40 0.72 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.41 7.72 -51.92 -0.40 1.01 16 41 H 0.06 0.99 7.82 -51.93 -0.41 0.58 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -26.54 311.15 -9.69 -36.23 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.54 Total: 6.01 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -1.90 Total: -23.99 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.08 Total: -39.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.54 -9.69 -36.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.254 kcal (2) G-P(sol) polarization free energy of solvation -26.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds