Wall clock time and date at job start Sun Mar 29 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46803 * 2 1 4 4 H 1.09005 * 109.47018 * 54.84531 * 3 2 1 5 5 C 1.50706 * 109.47112 * 174.84125 * 3 2 1 6 6 H 1.07998 * 119.99156 * 119.99681 * 5 3 2 7 7 C 1.37874 * 120.00284 * 299.73073 * 5 3 2 8 8 N 1.31515 * 119.99774 * 0.26998 * 7 5 3 9 9 Si 1.86795 * 120.00088 * 180.27580 * 7 5 3 10 10 H 1.48501 * 109.46899 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47421 * 119.99601 * 9 7 5 12 12 H 1.48504 * 109.46831 * 239.99829 * 9 7 5 13 13 N 1.46894 * 109.47245 * 294.84601 * 3 2 1 14 14 C 1.46901 * 111.00319 * 153.10896 * 13 3 2 15 15 H 1.09004 * 110.79742 * 329.97879 * 14 13 3 16 16 C 1.55051 * 110.90806 * 206.36363 * 14 13 3 17 17 C 1.54313 * 103.94274 * 201.73396 * 16 14 13 18 18 H 1.08998 * 111.54056 * 146.72080 * 17 16 14 19 19 C 1.54326 * 108.78106 * 270.16762 * 17 16 14 20 20 C 1.56303 * 103.35160 * 138.46651 * 19 17 16 21 21 C 1.55059 * 102.53642 * 320.69917 * 20 19 17 22 22 C 1.54318 * 103.94109 * 39.71711 * 21 20 19 23 23 H 1.08998 * 111.53497 * 96.88421 * 22 21 20 24 24 C 1.54353 * 108.74958 * 221.08356 * 22 21 20 25 25 H 1.09007 * 109.47258 * 295.31665 * 1 2 3 26 26 H 1.08999 * 109.47428 * 55.32462 * 1 2 3 27 27 H 1.09007 * 109.46723 * 175.32870 * 1 2 3 28 28 H 1.08996 * 109.47662 * 240.00455 * 2 1 3 29 29 H 1.09004 * 109.47622 * 119.99800 * 2 1 3 30 30 H 0.97004 * 119.99549 * 180.02562 * 8 7 5 31 31 H 1.00903 * 111.00229 * 277.06312 * 13 3 2 32 32 H 1.09000 * 110.53015 * 320.34576 * 16 14 13 33 33 H 1.09001 * 110.53618 * 82.97104 * 16 14 13 34 34 H 1.09000 * 110.53007 * 257.51947 * 19 17 16 35 35 H 1.08996 * 110.53366 * 20.29415 * 19 17 16 36 36 H 1.08999 * 111.00109 * 202.21390 * 20 19 17 37 37 H 1.09004 * 110.39947 * 78.90323 * 20 19 17 38 38 H 1.08998 * 110.53405 * 281.09644 * 21 20 19 39 39 H 1.09003 * 110.53154 * 158.33482 * 21 20 19 40 40 H 1.09007 * 110.56518 * 330.48692 * 24 22 21 41 41 H 1.08994 * 110.51738 * 207.70068 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6031 1.9824 0.8403 5 6 3.5415 1.4446 0.1278 6 1 4.1487 1.8884 -0.6473 7 6 4.1399 0.8847 1.2366 8 7 3.4004 0.3442 2.1803 9 14 6.0008 0.8941 1.3985 10 1 6.5976 1.5566 0.2110 11 1 6.3871 1.6354 2.6258 12 1 6.4969 -0.5028 1.4871 13 7 1.6544 2.0982 -1.2567 14 6 1.5315 3.5509 -1.0766 15 1 1.2267 3.7901 -0.0577 16 6 0.5415 4.1543 -2.1061 17 6 0.9369 5.6444 -2.1729 18 1 0.7857 6.0542 -3.1716 19 6 0.1274 6.4213 -1.1133 20 6 1.1786 7.4061 -0.5065 21 6 2.4571 6.5316 -0.4353 22 6 2.4241 5.7174 -1.7458 23 1 3.0413 6.1768 -2.5179 24 6 2.8573 4.2677 -1.4403 25 1 -0.3634 0.4395 0.9290 26 1 -0.3634 0.5846 -0.8451 27 1 -0.3633 -1.0243 -0.0837 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8213 -0.0494 2.9606 31 1 2.3077 1.8793 -1.9940 32 1 0.6673 3.6813 -3.0800 33 1 -0.4858 4.0443 -1.7586 34 1 -0.6950 6.9623 -1.5814 35 1 -0.2469 5.7439 -0.3458 36 1 0.8769 7.7356 0.4877 37 1 1.3272 8.2588 -1.1691 38 1 2.4187 5.8678 0.4284 39 1 3.3477 7.1589 -0.3971 40 1 3.5484 4.2441 -0.5976 41 1 3.3100 3.8108 -2.3202 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893605208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:56 Heat of formation + Delta-G solvation = -47.482971 kcal Electronic energy + Delta-G solvation = -17920.821704 eV Core-core repulsion = 15412.111914 eV Total energy + Delta-G solvation = -2508.709790 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69838 -37.71379 -34.86014 -33.47150 -31.54077 -31.20258 -28.44796 -26.36895 -26.06319 -24.37250 -21.96724 -21.36516 -20.98952 -19.61092 -18.51081 -17.19137 -16.81802 -15.82978 -15.41409 -15.36068 -14.88747 -14.65057 -14.55104 -13.99112 -13.67915 -13.27930 -13.19490 -13.03437 -12.77350 -12.61122 -12.24472 -12.18170 -11.92015 -11.81908 -11.58474 -11.51246 -11.47663 -11.44833 -11.34814 -11.23805 -11.01060 -10.85408 -10.44516 -8.94225 -8.03322 -6.24711 1.34832 1.37923 1.47369 2.39601 3.15798 3.51495 3.67520 3.77484 3.95234 4.27588 4.38996 4.45898 4.53852 4.61926 4.67603 4.70878 4.78157 4.81976 4.84482 4.88205 4.93865 4.98177 5.09030 5.12720 5.19469 5.21277 5.28885 5.31963 5.40929 5.42817 5.50292 5.55081 5.57702 5.66039 5.69366 5.80211 6.13647 6.23951 6.46552 6.88249 7.06857 7.46327 8.92886 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.008012 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.363613 B = 3493.861704 C = 4272.834781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.225 3.775 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.675 5.675 14 C 0.096 3.904 15 H 0.045 0.955 16 C -0.100 4.100 17 C -0.087 4.087 18 H 0.092 0.908 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.088 4.088 23 H 0.085 0.915 24 C -0.135 4.135 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.260 0.740 31 H 0.330 0.670 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 11.316 -7.745 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.011 0.989 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.303 5.303 14 C -0.014 4.014 15 H 0.063 0.937 16 C -0.138 4.138 17 C -0.106 4.106 18 H 0.111 0.889 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.161 4.161 22 C -0.107 4.107 23 H 0.103 0.897 24 C -0.174 4.174 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.156 11.082 -7.477 14.328 hybrid contribution 2.198 -0.225 0.811 2.354 sum -2.957 10.857 -6.666 13.079 Atomic orbital electron populations 1.21571 0.96549 0.99917 1.00289 1.21375 0.94347 0.98614 0.99917 1.18929 0.91710 0.91350 0.86441 0.98904 1.22201 0.93922 1.37302 1.05117 0.92924 1.25654 1.01748 0.95077 0.95746 1.70024 1.36134 1.39389 1.09732 0.85697 0.81568 0.77693 0.77820 1.19421 1.21020 1.20625 1.60801 1.53340 1.07734 1.08420 1.22429 0.94352 0.87311 0.97357 0.93688 1.22411 0.98170 0.94589 0.98641 1.22449 0.93800 0.94822 0.99549 0.88923 1.22735 0.97739 0.97603 0.97526 1.22750 0.94228 0.97661 1.00940 1.22506 0.98803 0.97982 0.96807 1.22417 0.96716 0.94255 0.97278 0.89657 1.23034 0.98123 0.96526 0.99722 0.95369 0.92232 0.93575 0.95301 0.92261 0.93079 0.85348 0.91549 0.92011 0.90014 0.93094 0.91636 0.90022 0.93960 0.91382 0.94178 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.85 71.98 0.71 -4.51 16 2 C -0.10 -5.09 5.45 30.59 0.17 -4.92 16 3 C 0.22 11.33 1.98 44.17 0.09 11.42 16 4 H -0.01 -0.40 7.39 -2.38 -0.02 -0.42 16 5 C -0.55 -29.61 8.10 25.60 0.21 -29.40 16 6 H 0.05 2.82 7.40 -2.91 -0.02 2.80 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -52.94 11.30 21.45 0.24 -52.70 16 9 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.68 -28.34 5.55 -466.13 -2.59 -30.93 16 14 C 0.10 3.58 3.13 46.32 0.14 3.73 16 15 H 0.04 1.92 7.40 -2.38 -0.02 1.90 16 16 C -0.10 -2.91 5.80 31.74 0.18 -2.73 16 17 C -0.09 -2.12 3.73 -9.24 -0.03 -2.15 16 18 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 19 C -0.12 -2.67 6.31 32.19 0.20 -2.47 16 20 C -0.12 -2.54 6.94 32.45 0.23 -2.31 16 21 C -0.12 -3.27 6.20 31.75 0.20 -3.08 16 22 C -0.09 -2.37 3.78 -9.23 -0.03 -2.40 16 23 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 24 C -0.13 -4.69 4.94 31.76 0.16 -4.53 16 25 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.06 2.34 7.63 -2.39 -0.02 2.32 16 27 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 3.27 5.96 -2.38 -0.01 3.26 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.33 13.69 7.86 -89.69 -0.70 12.99 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.33 7.64 -2.39 -0.02 1.31 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.04 1.35 7.65 -2.39 -0.02 1.34 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.62 7.72 -2.38 -0.02 1.60 16 41 H 0.06 1.96 7.82 -2.39 -0.02 1.94 16 Total: -1.00 -58.00 311.15 2.61 -55.39 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.27 Total: 24.20 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 2.66 Total: -41.96 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.35 Total: -83.63 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -58.00 2.61 -55.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.908 kcal (2) G-P(sol) polarization free energy of solvation -58.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds