Wall clock time and date at job start Sun Mar 29 2020 22:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46778 * 2 1 4 4 H 1.09003 * 109.47432 * 306.31376 * 3 2 1 5 5 C 1.50704 * 109.47153 * 186.31754 * 3 2 1 6 6 H 1.08003 * 119.99872 * 245.67480 * 5 3 2 7 7 C 1.37878 * 119.99887 * 65.67356 * 5 3 2 8 8 N 1.31512 * 119.99824 * 190.95702 * 7 5 3 9 9 Si 1.86800 * 119.99897 * 10.96195 * 7 5 3 10 10 H 1.48499 * 109.46882 * 88.59313 * 9 7 5 11 11 H 1.48506 * 109.46701 * 208.58777 * 9 7 5 12 12 H 1.48496 * 109.47163 * 328.58990 * 9 7 5 13 13 N 1.46903 * 109.47536 * 66.31567 * 3 2 1 14 14 C 1.46903 * 111.00177 * 207.93681 * 13 3 2 15 15 H 1.09001 * 110.67527 * 324.67105 * 14 13 3 16 16 C 1.54860 * 110.75800 * 201.42827 * 14 13 3 17 17 C 1.54196 * 104.27768 * 203.39706 * 16 14 13 18 18 H 1.09000 * 111.91193 * 145.67442 * 17 16 14 19 19 C 1.54199 * 108.91300 * 269.26333 * 17 16 14 20 20 C 1.54854 * 104.39424 * 138.18613 * 19 17 16 21 21 C 1.54858 * 102.74258 * 321.83080 * 20 19 17 22 22 C 1.54193 * 104.28151 * 38.09899 * 21 20 19 23 23 H 1.09002 * 111.38639 * 97.98624 * 22 21 20 24 24 C 1.54195 * 108.91610 * 221.22066 * 22 21 20 25 25 H 1.09009 * 109.46695 * 184.44018 * 1 2 3 26 26 H 1.08999 * 109.47357 * 304.44001 * 1 2 3 27 27 H 1.08999 * 109.47342 * 64.44498 * 1 2 3 28 28 H 1.09000 * 109.47347 * 239.99460 * 2 1 3 29 29 H 1.08998 * 109.47066 * 119.99431 * 2 1 3 30 30 H 0.97003 * 119.99747 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99486 * 331.89499 * 13 3 2 32 32 H 1.08999 * 110.46947 * 84.70190 * 16 14 13 33 33 H 1.08992 * 110.46831 * 322.09806 * 16 14 13 34 34 H 1.08998 * 110.46923 * 19.42390 * 19 17 16 35 35 H 1.08993 * 110.47224 * 256.95345 * 19 17 16 36 36 H 1.09008 * 110.75669 * 80.14256 * 20 19 17 37 37 H 1.08998 * 110.76314 * 203.33113 * 20 19 17 38 38 H 1.09000 * 110.47472 * 156.79970 * 21 20 19 39 39 H 1.09002 * 110.47076 * 279.26966 * 21 20 19 40 40 H 1.08995 * 110.47620 * 209.45399 * 24 22 21 41 41 H 1.09006 * 110.46553 * 332.05216 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5872 1.9879 -0.8281 5 6 3.5388 1.4455 -0.1563 6 1 4.1650 1.8003 0.6489 7 6 4.1107 0.9952 -1.3274 8 7 5.4087 0.7934 -1.3901 9 14 3.0417 0.6719 -2.8248 10 1 2.9162 1.9185 -3.6218 11 1 3.6647 -0.3878 -3.6581 12 1 1.6947 0.2278 -2.3848 13 7 1.6786 2.0897 1.2683 14 6 1.5280 3.5406 1.0949 15 1 2.2466 3.9178 0.3672 16 6 1.6824 4.2743 2.4498 17 6 0.9343 5.6074 2.2479 18 1 0.4443 5.9415 3.1624 19 6 1.9280 6.6639 1.7242 20 6 1.1404 7.4234 0.6285 21 6 0.3283 6.2946 -0.0530 22 6 -0.0891 5.3714 1.1093 23 1 -1.1065 5.5823 1.4389 24 6 0.0638 3.9038 0.6616 25 1 -0.3633 -1.0247 0.0796 26 1 -0.3634 0.5812 0.8475 27 1 -0.3634 0.4433 -0.9271 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 5.8111 0.4770 -2.2140 31 1 0.8405 1.6829 1.6559 32 1 2.7349 4.4570 2.6667 33 1 1.2219 3.6963 3.2509 34 1 2.8070 6.1816 1.2968 35 1 2.2188 7.3436 2.5251 36 1 0.4750 8.1633 1.0736 37 1 1.8212 7.8951 -0.0800 38 1 -0.5515 6.7041 -0.5493 39 1 0.9507 5.7547 -0.7667 40 1 -0.6560 3.2702 1.1796 41 1 -0.0605 3.8197 -0.4181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893605210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:59 Heat of formation + Delta-G solvation = -24.465319 kcal Electronic energy + Delta-G solvation = -17952.782340 eV Core-core repulsion = 15445.070670 eV Total energy + Delta-G solvation = -2507.711670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.53446 -36.39415 -33.30950 -31.91934 -30.26076 -30.09555 -27.22947 -25.15758 -24.95027 -22.46820 -20.80092 -19.78813 -19.65570 -18.55367 -16.65753 -16.12405 -14.97728 -14.63529 -14.42709 -14.00519 -13.54588 -13.49602 -13.10535 -12.72734 -12.41137 -12.05647 -11.82627 -11.64445 -11.14935 -11.03185 -10.85195 -10.76691 -10.59448 -10.56845 -10.41910 -10.33776 -10.21283 -10.15604 -9.94529 -9.78987 -9.32407 -9.10320 -8.44757 -7.23622 -6.01070 -3.94886 3.29116 3.38366 3.40338 4.46070 4.62168 4.71687 4.80147 5.18061 5.27314 5.35686 5.43036 5.55235 5.68197 5.72814 5.76371 5.81555 5.86424 5.89403 5.90746 5.96622 6.05240 6.08431 6.14310 6.21964 6.28862 6.33005 6.38924 6.53218 6.55012 6.59901 6.65862 6.72531 6.79222 6.86445 7.03696 7.29090 7.82605 8.08520 8.36813 8.83343 9.14881 9.64831 11.12549 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025163 B = 0.007713 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.470765 B = 3629.401660 C = 3929.772760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C 0.194 3.806 4 H -0.004 1.004 5 C -0.496 4.496 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.668 5.668 14 C 0.097 3.903 15 H 0.087 0.913 16 C -0.106 4.106 17 C -0.092 4.092 18 H 0.070 0.930 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.089 4.089 23 H 0.067 0.933 24 C -0.152 4.152 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.319 0.681 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 8.829 4.313 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.085 3.915 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.174 1.174 13 N -0.297 5.297 14 C -0.014 4.014 15 H 0.106 0.894 16 C -0.144 4.144 17 C -0.111 4.111 18 H 0.088 0.912 19 C -0.158 4.158 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.108 4.108 23 H 0.085 0.915 24 C -0.191 4.191 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.903 8.774 4.408 14.673 hybrid contribution -1.339 -0.169 -1.488 2.009 sum -12.242 8.605 2.920 15.246 Atomic orbital electron populations 1.21913 0.98660 1.00204 1.00428 1.22227 0.92464 1.00414 1.02211 1.19497 0.96565 0.89376 0.86015 0.98614 1.21046 0.89347 1.41606 1.01437 0.90305 1.24931 0.94681 0.95129 0.98481 1.69940 1.10421 1.46333 1.27082 0.87388 0.82362 0.78113 0.83762 1.20861 1.21561 1.17358 1.60524 1.38332 1.01581 1.29297 1.22845 0.93485 0.89090 0.95984 0.89442 1.22354 0.99998 0.94125 0.97907 1.22385 0.95498 0.95882 0.97361 0.91176 1.22487 0.98449 0.97144 0.97722 1.22469 0.98538 0.97329 0.97886 1.22472 0.99356 0.96433 0.97544 1.22291 0.98187 0.95262 0.95021 0.91493 1.23554 0.99518 0.95500 1.00568 0.93845 0.93516 0.93860 0.91752 0.91969 0.92878 0.86283 0.91348 0.92084 0.90897 0.92292 0.92126 0.91922 0.92435 0.91158 0.92406 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.82 37.16 0.36 -2.31 16 2 C -0.13 -2.89 4.72 -26.73 -0.13 -3.01 16 3 C 0.19 4.50 1.45 -68.86 -0.10 4.40 16 4 H 0.00 -0.09 6.57 -51.93 -0.34 -0.43 16 5 C -0.50 -13.97 9.14 -34.44 -0.31 -14.28 16 6 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 7 C 0.07 1.99 5.38 -17.82 -0.10 1.89 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 9 Si 0.86 21.15 25.80 -169.99 -4.39 16.76 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.25 -5.72 5.23 56.52 0.30 -5.42 16 13 N -0.67 -13.51 6.18 -97.70 -0.60 -14.12 16 14 C 0.10 1.74 2.94 -64.59 -0.19 1.55 16 15 H 0.09 1.82 7.83 -51.93 -0.41 1.41 16 16 C -0.11 -1.63 5.83 -25.13 -0.15 -1.78 16 17 C -0.09 -1.20 3.76 -88.37 -0.33 -1.54 16 18 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.12 -1.52 6.21 -25.13 -0.16 -1.67 16 20 C -0.12 -1.45 6.90 -24.77 -0.17 -1.62 16 21 C -0.12 -1.53 6.21 -25.13 -0.16 -1.69 16 22 C -0.09 -1.16 3.70 -88.37 -0.33 -1.49 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 C -0.15 -2.31 5.83 -23.96 -0.14 -2.45 16 25 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.05 0.73 6.40 -51.93 -0.33 0.40 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.47 4.60 -51.93 -0.24 1.23 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.32 5.79 6.09 -39.29 -0.24 5.55 16 32 H 0.07 1.11 7.70 -51.93 -0.40 0.71 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.04 7.61 -51.93 -0.40 0.64 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.01 7.63 -51.93 -0.40 0.61 16 40 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 41 H 0.06 0.99 7.71 -51.93 -0.40 0.59 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -29.34 305.07 -8.96 -38.30 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.45 Total: 5.37 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -1.89 Total: -23.99 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.17 Total: -41.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.39 Total: 16.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.34 -8.96 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.830 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds