Wall clock time and date at job start Sun Mar 29 2020 22:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46778 * 2 1 4 4 H 1.09003 * 109.47432 * 306.31376 * 3 2 1 5 5 C 1.50704 * 109.47153 * 186.31754 * 3 2 1 6 6 H 1.08003 * 119.99872 * 245.67480 * 5 3 2 7 7 C 1.37878 * 119.99887 * 65.67356 * 5 3 2 8 8 N 1.31512 * 119.99824 * 190.95702 * 7 5 3 9 9 Si 1.86800 * 119.99897 * 10.96195 * 7 5 3 10 10 H 1.48499 * 109.46882 * 88.59313 * 9 7 5 11 11 H 1.48506 * 109.46701 * 208.58777 * 9 7 5 12 12 H 1.48496 * 109.47163 * 328.58990 * 9 7 5 13 13 N 1.46903 * 109.47536 * 66.31567 * 3 2 1 14 14 C 1.46903 * 111.00177 * 207.93681 * 13 3 2 15 15 H 1.09001 * 110.67527 * 324.67105 * 14 13 3 16 16 C 1.54860 * 110.75800 * 201.42827 * 14 13 3 17 17 C 1.54196 * 104.27768 * 203.39706 * 16 14 13 18 18 H 1.09000 * 111.91193 * 145.67442 * 17 16 14 19 19 C 1.54199 * 108.91300 * 269.26333 * 17 16 14 20 20 C 1.54854 * 104.39424 * 138.18613 * 19 17 16 21 21 C 1.54858 * 102.74258 * 321.83080 * 20 19 17 22 22 C 1.54193 * 104.28151 * 38.09899 * 21 20 19 23 23 H 1.09002 * 111.38639 * 97.98624 * 22 21 20 24 24 C 1.54195 * 108.91610 * 221.22066 * 22 21 20 25 25 H 1.09009 * 109.46695 * 184.44018 * 1 2 3 26 26 H 1.08999 * 109.47357 * 304.44001 * 1 2 3 27 27 H 1.08999 * 109.47342 * 64.44498 * 1 2 3 28 28 H 1.09000 * 109.47347 * 239.99460 * 2 1 3 29 29 H 1.08998 * 109.47066 * 119.99431 * 2 1 3 30 30 H 0.97003 * 119.99747 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99486 * 331.89499 * 13 3 2 32 32 H 1.08999 * 110.46947 * 84.70190 * 16 14 13 33 33 H 1.08992 * 110.46831 * 322.09806 * 16 14 13 34 34 H 1.08998 * 110.46923 * 19.42390 * 19 17 16 35 35 H 1.08993 * 110.47224 * 256.95345 * 19 17 16 36 36 H 1.09008 * 110.75669 * 80.14256 * 20 19 17 37 37 H 1.08998 * 110.76314 * 203.33113 * 20 19 17 38 38 H 1.09000 * 110.47472 * 156.79970 * 21 20 19 39 39 H 1.09002 * 110.47076 * 279.26966 * 21 20 19 40 40 H 1.08995 * 110.47620 * 209.45399 * 24 22 21 41 41 H 1.09006 * 110.46553 * 332.05216 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5872 1.9879 -0.8281 5 6 3.5388 1.4455 -0.1563 6 1 4.1650 1.8003 0.6489 7 6 4.1107 0.9952 -1.3274 8 7 5.4087 0.7934 -1.3901 9 14 3.0417 0.6719 -2.8248 10 1 2.9162 1.9185 -3.6218 11 1 3.6647 -0.3878 -3.6581 12 1 1.6947 0.2278 -2.3848 13 7 1.6786 2.0897 1.2683 14 6 1.5280 3.5406 1.0949 15 1 2.2466 3.9178 0.3672 16 6 1.6824 4.2743 2.4498 17 6 0.9343 5.6074 2.2479 18 1 0.4443 5.9415 3.1624 19 6 1.9280 6.6639 1.7242 20 6 1.1404 7.4234 0.6285 21 6 0.3283 6.2946 -0.0530 22 6 -0.0891 5.3714 1.1093 23 1 -1.1065 5.5823 1.4389 24 6 0.0638 3.9038 0.6616 25 1 -0.3633 -1.0247 0.0796 26 1 -0.3634 0.5812 0.8475 27 1 -0.3634 0.4433 -0.9271 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 5.8111 0.4770 -2.2140 31 1 0.8405 1.6829 1.6559 32 1 2.7349 4.4570 2.6667 33 1 1.2219 3.6963 3.2509 34 1 2.8070 6.1816 1.2968 35 1 2.2188 7.3436 2.5251 36 1 0.4750 8.1633 1.0736 37 1 1.8212 7.8951 -0.0800 38 1 -0.5515 6.7041 -0.5493 39 1 0.9507 5.7547 -0.7667 40 1 -0.6560 3.2702 1.1796 41 1 -0.0605 3.8197 -0.4181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893605210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:59 Heat of formation + Delta-G solvation = -42.556347 kcal Electronic energy + Delta-G solvation = -17953.566825 eV Core-core repulsion = 15445.070670 eV Total energy + Delta-G solvation = -2508.496156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71382 -38.03210 -34.85483 -33.90647 -31.50141 -31.34500 -29.05724 -26.53519 -26.13627 -24.23119 -21.89927 -21.52920 -21.03361 -19.67684 -18.77478 -17.37717 -16.72302 -16.23664 -15.61317 -15.47876 -14.95629 -14.75906 -14.61708 -14.39456 -13.97033 -13.50930 -13.37252 -13.05956 -12.78136 -12.57899 -12.30639 -12.22591 -11.92235 -11.84138 -11.67714 -11.60134 -11.49665 -11.37876 -11.29831 -11.23981 -11.16566 -10.99746 -10.61832 -8.89063 -8.26928 -6.25641 1.31116 1.33821 1.43415 2.34603 3.06426 3.42309 3.60911 3.72649 3.84138 4.19009 4.32463 4.36453 4.42057 4.46803 4.48291 4.52141 4.62966 4.68941 4.77997 4.82929 4.83409 4.87158 4.94704 5.01373 5.09364 5.13691 5.15191 5.17794 5.26077 5.27276 5.29032 5.42839 5.44366 5.52893 5.56245 5.65734 5.80699 6.15222 6.60802 6.80814 7.04399 7.38739 8.90797 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025163 B = 0.007713 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.470765 B = 3629.401660 C = 3929.772760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.202 3.798 4 H -0.007 1.007 5 C -0.501 4.501 6 H 0.025 0.975 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.923 3.077 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.216 1.216 13 N -0.679 5.679 14 C 0.091 3.909 15 H 0.045 0.955 16 C -0.102 4.102 17 C -0.085 4.085 18 H 0.096 0.904 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.084 4.084 23 H 0.094 0.906 24 C -0.143 4.143 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.263 0.737 31 H 0.335 0.665 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.517 9.507 4.525 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.093 3.907 4 H 0.010 0.990 5 C -0.539 4.539 6 H 0.044 0.956 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.747 3.253 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.139 1.139 13 N -0.310 5.310 14 C -0.020 4.020 15 H 0.063 0.937 16 C -0.140 4.140 17 C -0.104 4.104 18 H 0.114 0.886 19 C -0.162 4.162 20 C -0.157 4.157 21 C -0.161 4.161 22 C -0.102 4.102 23 H 0.112 0.888 24 C -0.182 4.182 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.723 9.461 4.644 18.106 hybrid contribution -0.036 -0.344 -1.447 1.488 sum -14.759 9.117 3.197 17.640 Atomic orbital electron populations 1.21824 0.94735 1.02288 1.01465 1.22099 0.95918 0.98134 1.01163 1.19253 0.93044 0.91135 0.87270 0.98984 1.21321 0.92013 1.40619 0.99979 0.95633 1.25806 0.95982 0.95069 1.01875 1.70105 1.12746 1.48269 1.28083 0.86305 0.81928 0.77924 0.79099 1.20751 1.21422 1.13900 1.60361 1.39670 1.02959 1.28049 1.22806 0.94783 0.87742 0.96639 0.93703 1.22301 0.99442 0.95653 0.96591 1.22394 0.95296 0.94167 0.98566 0.88600 1.22488 0.97584 0.97469 0.98624 1.22468 0.98572 0.97285 0.97380 1.22481 0.99808 0.96609 0.97203 1.22320 0.99483 0.93560 0.94877 0.88800 1.23438 0.97115 0.97499 1.00163 0.91399 0.91760 0.93438 0.93231 0.92754 0.92840 0.84508 0.93425 0.91120 0.93929 0.90603 0.89748 0.92024 0.90522 0.93883 0.90759 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.82 71.98 0.71 -3.79 16 2 C -0.13 -5.58 4.72 30.59 0.14 -5.43 16 3 C 0.20 9.44 1.45 44.17 0.06 9.51 16 4 H -0.01 -0.35 6.57 -2.39 -0.02 -0.37 16 5 C -0.50 -29.60 9.14 25.60 0.23 -29.37 16 6 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 7 C 0.01 0.54 5.38 84.66 0.46 1.00 16 8 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 9 Si 0.92 44.33 25.80 68.60 1.77 46.10 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.22 -9.18 5.23 99.48 0.52 -8.66 16 13 N -0.68 -27.58 6.18 -463.01 -2.86 -30.44 16 14 C 0.09 3.30 2.94 46.94 0.14 3.44 16 15 H 0.04 1.99 7.83 -2.39 -0.02 1.97 16 16 C -0.10 -3.11 5.83 31.63 0.18 -2.93 16 17 C -0.09 -2.04 3.76 -9.33 -0.04 -2.07 16 18 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 19 C -0.12 -3.00 6.21 31.63 0.20 -2.80 16 20 C -0.12 -2.53 6.90 31.86 0.22 -2.31 16 21 C -0.12 -2.89 6.21 31.63 0.20 -2.70 16 22 C -0.08 -1.94 3.70 -9.34 -0.03 -1.97 16 23 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 24 C -0.14 -4.05 5.83 32.39 0.19 -3.86 16 25 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.06 1.75 6.40 -2.39 -0.02 1.74 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 2.17 4.60 -2.39 -0.01 2.16 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.33 11.58 6.09 -89.70 -0.55 11.03 16 32 H 0.05 1.62 7.70 -2.39 -0.02 1.60 16 33 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.27 7.61 -2.39 -0.02 1.25 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.04 1.23 7.63 -2.39 -0.02 1.21 16 40 H 0.07 1.88 7.86 -2.39 -0.02 1.86 16 41 H 0.05 1.58 7.71 -2.38 -0.02 1.56 16 Total: -1.00 -67.52 305.07 2.12 -65.40 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.25 Total: 23.29 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 2.66 Total: -43.29 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -2.56 Total: -91.49 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.77 Total: 46.10 kcal Total: -67.52 2.12 -65.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893605210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.848 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds