Wall clock time and date at job start Sun Mar 29 2020 22:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47167 * 2 1 4 4 H 1.09000 * 109.47073 * 305.00213 * 3 2 1 5 5 C 1.50705 * 109.47354 * 184.99733 * 3 2 1 6 6 H 1.07994 * 119.99980 * 240.00581 * 5 3 2 7 7 C 1.37875 * 119.99653 * 60.00054 * 5 3 2 8 8 N 1.31520 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99814 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.46870 * 90.00231 * 9 7 5 11 11 H 1.48504 * 109.47118 * 210.00262 * 9 7 5 12 12 H 1.48504 * 109.47012 * 330.00263 * 9 7 5 13 13 N 1.46901 * 109.46765 * 65.00131 * 3 2 1 14 14 C 1.46904 * 111.00049 * 274.99955 * 13 3 2 15 15 C 1.53916 * 113.59490 * 155.00341 * 14 13 3 16 16 C 1.53020 * 86.85606 * 89.72333 * 15 14 13 17 17 C 1.53020 * 87.86618 * 25.00547 * 16 15 14 18 18 C 1.53170 * 115.34830 * 142.17954 * 16 15 14 19 19 C 1.54464 * 106.28066 * 130.05873 * 18 16 15 20 20 C 1.54955 * 104.34120 * 336.41027 * 19 18 16 21 21 C 1.53564 * 115.10969 * 268.14726 * 16 15 14 22 22 H 1.09003 * 109.46852 * 59.99959 * 1 2 3 23 23 H 1.08999 * 109.47238 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47387 * 300.00103 * 1 2 3 25 25 H 1.08998 * 109.47609 * 240.00400 * 2 1 3 26 26 H 1.08996 * 109.47463 * 120.00224 * 2 1 3 27 27 H 0.96994 * 119.99334 * 179.97438 * 8 7 5 28 28 H 1.00903 * 111.00327 * 151.05002 * 13 3 2 29 29 H 1.09000 * 112.88518 * 23.81855 * 14 13 3 30 30 H 1.09004 * 113.64782 * 335.23162 * 15 14 13 31 31 H 1.08997 * 113.65006 * 204.21961 * 15 14 13 32 32 H 1.09001 * 113.65531 * 89.48405 * 17 16 15 33 33 H 1.09003 * 113.65236 * 220.51062 * 17 16 15 34 34 H 1.08997 * 110.09206 * 10.84742 * 18 16 15 35 35 H 1.09010 * 110.14097 * 249.28852 * 18 16 15 36 36 H 1.09002 * 110.48260 * 95.16227 * 19 18 16 37 37 H 1.08995 * 110.47942 * 217.65713 * 19 18 16 38 38 H 1.09003 * 110.73545 * 155.96591 * 20 19 18 39 39 H 1.09006 * 110.73551 * 279.27356 * 20 19 18 40 40 H 1.08999 * 110.52604 * 11.77227 * 21 16 15 41 41 H 1.09003 * 110.52637 * 134.52158 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8814 -1.3817 10 1 6.5548 -0.3500 -0.7601 11 1 6.3830 0.9225 -2.8172 12 1 6.5569 2.0739 -0.6900 13 7 1.6513 2.0992 1.2553 14 6 0.2912 2.6467 1.1639 15 6 -0.4082 2.7899 2.5275 16 6 0.1961 4.1941 2.5951 17 6 0.2505 4.1823 1.0660 18 6 -0.7065 5.2674 3.2113 19 6 0.1463 5.9908 4.2768 20 6 1.2400 4.9610 4.6570 21 6 1.5598 4.2837 3.2955 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8293 -0.0603 -2.9502 28 1 2.3138 2.8171 1.5080 29 1 -0.3179 2.1453 0.4117 30 1 -0.0241 2.1114 3.2892 31 1 -1.4963 2.7846 2.4635 32 1 -0.6533 4.5665 0.5932 33 1 1.1621 4.6187 0.6575 34 1 -1.5750 4.8032 3.6785 35 1 -1.0267 5.9736 2.4452 36 1 0.5982 6.8898 3.8577 37 1 -0.4614 6.2404 5.1465 38 1 2.1206 5.4634 5.0574 39 1 0.8530 4.2323 5.3694 40 1 1.9749 3.2881 3.4524 41 1 2.2478 4.8986 2.7153 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893606494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:47 Heat of formation + Delta-G solvation = 1.159476 kcal Electronic energy + Delta-G solvation = -17850.060183 eV Core-core repulsion = 15343.459687 eV Total energy + Delta-G solvation = -2506.600495 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07168 -36.17812 -34.15461 -31.77872 -29.97680 -28.48878 -26.92368 -25.40711 -25.20150 -22.78263 -20.62910 -20.10503 -19.37521 -17.87898 -16.42419 -15.57880 -15.13915 -14.75389 -14.24039 -13.91601 -13.37832 -13.10202 -12.75170 -12.45191 -12.34611 -12.20402 -11.69884 -11.61886 -11.13546 -10.98401 -10.88917 -10.73858 -10.68734 -10.56648 -10.41558 -10.30147 -10.02092 -9.91375 -9.68158 -9.55481 -8.95776 -8.76062 -8.41715 -7.16897 -6.00553 -4.07075 3.30530 3.37020 3.39839 4.41222 4.70645 4.75432 4.81071 5.17583 5.27375 5.30056 5.37693 5.48575 5.62125 5.73269 5.78490 5.92637 6.00770 6.01721 6.10465 6.15428 6.23233 6.31261 6.36702 6.38855 6.44079 6.48397 6.55654 6.61857 6.63605 6.75959 6.83289 7.09644 7.20197 7.44208 7.65586 7.80834 7.95356 8.34608 8.48115 8.73584 9.05103 9.58686 11.04991 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.006711 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.600548 B = 4171.135907 C = 4809.482622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.667 5.667 14 C 0.067 3.933 15 C -0.126 4.126 16 C -0.078 4.078 17 C -0.164 4.164 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.105 4.105 22 H 0.036 0.964 23 H 0.027 0.973 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.260 0.740 28 H 0.333 0.667 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 7.629 9.135 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.298 5.298 14 C -0.045 4.045 15 C -0.164 4.164 16 C -0.078 4.078 17 C -0.203 4.203 18 C -0.148 4.148 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.142 4.142 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.159 6.938 9.238 13.591 hybrid contribution 1.068 0.778 -0.788 1.539 sum -6.091 7.715 8.450 12.962 Atomic orbital electron populations 1.22061 0.99901 0.98934 1.00038 1.21527 0.91336 0.99690 1.01953 1.19105 0.94321 0.90980 0.84524 0.98063 1.21284 0.91386 1.37924 1.05072 0.92371 1.24908 0.98148 0.95215 0.95651 1.69894 1.34794 1.38563 1.09469 0.86559 0.85683 0.78440 0.77070 1.20639 1.21319 1.19994 1.60619 1.00322 1.32431 1.36459 1.22876 0.93562 0.91754 0.96323 1.23109 0.98442 0.95545 0.99306 1.21840 0.95631 0.95273 0.95080 1.23719 1.01501 0.99934 0.95128 1.22071 0.97869 0.97265 0.97597 1.22380 0.97373 0.98178 0.98242 1.22569 0.98040 0.97823 0.97626 1.22255 0.95512 1.01604 0.94848 0.94491 0.95362 0.92908 0.89267 0.94405 0.92969 0.84762 0.89669 0.91028 0.91125 0.90921 0.91731 0.92108 0.92232 0.92124 0.92435 0.92074 0.91770 0.89940 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.48 37.16 0.32 -2.82 16 2 C -0.11 -2.60 5.45 -26.73 -0.15 -2.74 16 3 C 0.22 5.45 2.20 -68.86 -0.15 5.29 16 4 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 5 C -0.52 -14.12 8.59 -34.44 -0.30 -14.42 16 6 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.29 11.30 55.43 0.63 -24.67 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.67 -13.97 5.84 -99.94 -0.58 -14.56 16 14 C 0.07 1.19 2.62 -66.75 -0.17 1.02 16 15 C -0.13 -1.91 6.92 -26.24 -0.18 -2.09 16 16 C -0.08 -1.10 1.14 -154.11 -0.18 -1.28 16 17 C -0.16 -2.60 6.82 -26.24 -0.18 -2.78 16 18 C -0.11 -1.34 6.33 -25.88 -0.16 -1.50 16 19 C -0.12 -1.37 6.83 -24.93 -0.17 -1.54 16 20 C -0.12 -1.45 6.94 -24.43 -0.17 -1.62 16 21 C -0.10 -1.48 4.75 -25.16 -0.12 -1.60 16 22 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 1.02 5.59 -51.93 -0.29 0.73 16 25 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.33 6.91 5.83 -39.29 -0.23 6.68 16 29 H 0.09 1.62 5.13 -51.93 -0.27 1.35 16 30 H 0.07 1.14 8.03 -51.93 -0.42 0.73 16 31 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 32 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 34 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 35 H 0.06 0.70 7.91 -51.92 -0.41 0.29 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.28 6.86 -51.93 -0.36 0.93 16 41 H 0.06 0.93 8.03 -51.93 -0.42 0.51 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -27.22 306.26 -9.32 -36.54 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.25 Total: 6.27 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -1.71 Total: -24.45 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.04 Total: -39.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.22 -9.32 -36.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.701 kcal (2) G-P(sol) polarization free energy of solvation -27.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds