Wall clock time and date at job start Sun Mar 29 2020 22:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47167 * 2 1 4 4 H 1.09000 * 109.47073 * 305.00213 * 3 2 1 5 5 C 1.50705 * 109.47354 * 184.99733 * 3 2 1 6 6 H 1.07994 * 119.99980 * 240.00581 * 5 3 2 7 7 C 1.37875 * 119.99653 * 60.00054 * 5 3 2 8 8 N 1.31520 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99814 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.46870 * 90.00231 * 9 7 5 11 11 H 1.48504 * 109.47118 * 210.00262 * 9 7 5 12 12 H 1.48504 * 109.47012 * 330.00263 * 9 7 5 13 13 N 1.46901 * 109.46765 * 65.00131 * 3 2 1 14 14 C 1.46904 * 111.00049 * 274.99955 * 13 3 2 15 15 C 1.53916 * 113.59490 * 155.00341 * 14 13 3 16 16 C 1.53020 * 86.85606 * 89.72333 * 15 14 13 17 17 C 1.53020 * 87.86618 * 25.00547 * 16 15 14 18 18 C 1.53170 * 115.34830 * 142.17954 * 16 15 14 19 19 C 1.54464 * 106.28066 * 130.05873 * 18 16 15 20 20 C 1.54955 * 104.34120 * 336.41027 * 19 18 16 21 21 C 1.53564 * 115.10969 * 268.14726 * 16 15 14 22 22 H 1.09003 * 109.46852 * 59.99959 * 1 2 3 23 23 H 1.08999 * 109.47238 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47387 * 300.00103 * 1 2 3 25 25 H 1.08998 * 109.47609 * 240.00400 * 2 1 3 26 26 H 1.08996 * 109.47463 * 120.00224 * 2 1 3 27 27 H 0.96994 * 119.99334 * 179.97438 * 8 7 5 28 28 H 1.00903 * 111.00327 * 151.05002 * 13 3 2 29 29 H 1.09000 * 112.88518 * 23.81855 * 14 13 3 30 30 H 1.09004 * 113.64782 * 335.23162 * 15 14 13 31 31 H 1.08997 * 113.65006 * 204.21961 * 15 14 13 32 32 H 1.09001 * 113.65531 * 89.48405 * 17 16 15 33 33 H 1.09003 * 113.65236 * 220.51062 * 17 16 15 34 34 H 1.08997 * 110.09206 * 10.84742 * 18 16 15 35 35 H 1.09010 * 110.14097 * 249.28852 * 18 16 15 36 36 H 1.09002 * 110.48260 * 95.16227 * 19 18 16 37 37 H 1.08995 * 110.47942 * 217.65713 * 19 18 16 38 38 H 1.09003 * 110.73545 * 155.96591 * 20 19 18 39 39 H 1.09006 * 110.73551 * 279.27356 * 20 19 18 40 40 H 1.08999 * 110.52604 * 11.77227 * 21 16 15 41 41 H 1.09003 * 110.52637 * 134.52158 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0050 0.8814 -1.3817 10 1 6.5548 -0.3500 -0.7601 11 1 6.3830 0.9225 -2.8172 12 1 6.5569 2.0739 -0.6900 13 7 1.6513 2.0992 1.2553 14 6 0.2912 2.6467 1.1639 15 6 -0.4082 2.7899 2.5275 16 6 0.1961 4.1941 2.5951 17 6 0.2505 4.1823 1.0660 18 6 -0.7065 5.2674 3.2113 19 6 0.1463 5.9908 4.2768 20 6 1.2400 4.9610 4.6570 21 6 1.5598 4.2837 3.2955 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8293 -0.0603 -2.9502 28 1 2.3138 2.8171 1.5080 29 1 -0.3179 2.1453 0.4117 30 1 -0.0241 2.1114 3.2892 31 1 -1.4963 2.7846 2.4635 32 1 -0.6533 4.5665 0.5932 33 1 1.1621 4.6187 0.6575 34 1 -1.5750 4.8032 3.6785 35 1 -1.0267 5.9736 2.4452 36 1 0.5982 6.8898 3.8577 37 1 -0.4614 6.2404 5.1465 38 1 2.1206 5.4634 5.0574 39 1 0.8530 4.2323 5.3694 40 1 1.9749 3.2881 3.4524 41 1 2.2478 4.8986 2.7153 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893606494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:46 Heat of formation + Delta-G solvation = -13.176583 kcal Electronic energy + Delta-G solvation = -17850.681841 eV Core-core repulsion = 15343.459687 eV Total energy + Delta-G solvation = -2507.222154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.32759 -37.76272 -35.62572 -33.74090 -31.67289 -29.54856 -28.59979 -26.81894 -26.50487 -24.66903 -21.79337 -21.44744 -21.14230 -19.15827 -18.34775 -17.10890 -16.42872 -16.22973 -15.83612 -15.46566 -14.83478 -14.37635 -14.23901 -14.04440 -13.72051 -13.58882 -13.42468 -13.06567 -12.99612 -12.70450 -12.52405 -12.04563 -11.95039 -11.89132 -11.79986 -11.62801 -11.49149 -11.35194 -11.30346 -10.89107 -10.77551 -10.51126 -10.40771 -8.90796 -8.11762 -6.25957 1.40622 1.41571 1.51378 2.41061 3.15398 3.54330 3.62995 3.69428 3.79987 4.09733 4.24032 4.42122 4.46311 4.60854 4.64355 4.67876 4.72757 4.81814 4.85022 4.89247 4.94619 4.99197 5.07387 5.13843 5.14308 5.21538 5.24375 5.29968 5.36579 5.44687 5.45845 5.54187 5.56798 5.62285 5.67168 5.79279 5.93367 6.31510 6.57272 6.86579 7.06348 7.44367 8.92793 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.006711 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.600548 B = 4171.135907 C = 4809.482622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C 0.226 3.774 4 H -0.034 1.034 5 C -0.539 4.539 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.663 5.663 14 C 0.049 3.951 15 C -0.113 4.113 16 C -0.071 4.071 17 C -0.160 4.160 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.109 4.109 22 H 0.032 0.968 23 H 0.046 0.954 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.262 0.738 28 H 0.332 0.668 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 8.602 10.612 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C 0.117 3.883 4 H -0.017 1.017 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.294 5.294 14 C -0.062 4.062 15 C -0.151 4.151 16 C -0.071 4.071 17 C -0.200 4.200 18 C -0.145 4.145 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.147 4.147 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.892 7.920 10.732 15.498 hybrid contribution 1.279 0.476 -1.270 1.864 sum -6.612 8.395 9.462 14.274 Atomic orbital electron populations 1.21914 0.96864 1.00319 1.00551 1.21363 0.94073 0.98736 0.99873 1.18866 0.93163 0.91305 0.84940 1.01688 1.21628 0.92814 1.38044 1.05228 0.92706 1.25694 1.02617 0.94813 0.95331 1.70028 1.36520 1.39045 1.09850 0.85550 0.80300 0.78610 0.77119 1.20131 1.20885 1.19341 1.60577 1.01868 1.32912 1.34032 1.22998 0.91868 0.93113 0.98187 1.23053 0.99403 0.95913 0.96718 1.21783 0.96126 0.95534 0.93612 1.23689 1.01331 0.97952 0.96979 1.22056 0.97826 0.96645 0.98006 1.22375 0.97034 0.97756 0.98612 1.22553 0.98884 0.98046 0.96107 1.22245 0.95350 1.00635 0.96451 0.94862 0.93505 0.91450 0.92266 0.95350 0.92931 0.84924 0.90868 0.91742 0.88911 0.89322 0.93653 0.90881 0.91685 0.91869 0.90541 0.91175 0.91314 0.91911 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.48 71.98 0.61 -5.09 16 2 C -0.10 -5.08 5.45 30.59 0.17 -4.92 16 3 C 0.23 11.64 2.20 44.17 0.10 11.74 16 4 H -0.03 -1.99 7.84 -2.39 -0.02 -2.01 16 5 C -0.54 -30.14 8.59 25.60 0.22 -29.92 16 6 H 0.05 3.02 7.62 -2.91 -0.02 3.00 16 7 C 0.01 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -53.39 11.30 21.45 0.24 -53.15 16 9 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.66 -28.33 5.84 -470.12 -2.75 -31.08 16 14 C 0.05 1.76 2.62 45.53 0.12 1.88 16 15 C -0.11 -3.22 6.92 30.91 0.21 -3.00 16 16 C -0.07 -1.87 1.14 -51.92 -0.06 -1.93 16 17 C -0.16 -5.00 6.82 30.91 0.21 -4.79 16 18 C -0.11 -2.27 6.33 31.15 0.20 -2.07 16 19 C -0.12 -2.27 6.83 31.76 0.22 -2.05 16 20 C -0.12 -2.52 6.94 32.09 0.22 -2.30 16 21 C -0.11 -2.98 4.75 31.61 0.15 -2.83 16 22 H 0.03 1.36 7.90 -2.39 -0.02 1.34 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 2.54 5.59 -2.39 -0.01 2.53 16 25 H 0.06 3.32 5.95 -2.39 -0.01 3.31 16 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.33 14.17 5.83 -89.69 -0.52 13.65 16 29 H 0.07 2.78 5.13 -2.39 -0.01 2.76 16 30 H 0.06 1.95 8.03 -2.38 -0.02 1.93 16 31 H 0.09 2.26 8.11 -2.39 -0.02 2.24 16 32 H 0.09 2.46 8.11 -2.39 -0.02 2.44 16 33 H 0.04 1.57 7.95 -2.39 -0.02 1.56 16 34 H 0.07 1.39 7.91 -2.39 -0.02 1.37 16 35 H 0.06 1.32 7.91 -2.38 -0.02 1.30 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.06 1.95 6.86 -2.39 -0.02 1.93 16 41 H 0.05 1.58 8.03 -2.39 -0.02 1.56 16 Total: -1.00 -59.18 306.26 2.80 -56.38 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.46 Total: 25.73 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 2.81 Total: -44.02 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.50 Total: -84.22 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.18 2.80 -56.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893606494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.201 kcal (2) G-P(sol) polarization free energy of solvation -59.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds